HEADER TRANSLATION 18-DEC-07 3BPJ TITLE CRYSTAL STRUCTURE OF HUMAN TRANSLATION INITIATION FACTOR 3, SUBUNIT 1 TITLE 2 ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PROTEOLYTIC FRAGMENT: RESIDUES 141-220; COMPND 5 SYNONYM: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1, EIF-3- COMPND 6 ALPHA, EIF3 P35, EIF3J; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF3J, EIF3S1, PRO0391; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS TRANSLATION INITIATION, EIF3S1, STRUCTURAL GENOMICS, LIMITED KEYWDS 2 PROTEOLYSIS, INITIATION FACTOR, PHOSPHOPROTEIN, PROTEIN KEYWDS 3 BIOSYNTHESIS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,L.NEDYALKOVA,B.HONG,F.MACKENZIE,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 21-FEB-24 3BPJ 1 REMARK REVDAT 4 25-OCT-17 3BPJ 1 REMARK REVDAT 3 13-JUL-11 3BPJ 1 VERSN REVDAT 2 24-FEB-09 3BPJ 1 VERSN REVDAT 1 15-JAN-08 3BPJ 0 JRNL AUTH L.NEDYALKOVA,B.HONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN TRANSLATION INITIATION FACTOR 3, JRNL TITL 2 SUBUNIT 1 ALPHA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (FROM PROGRAM REMARK 3 SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.947 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20800 REMARK 3 B22 (A**2) : -0.65400 REMARK 3 B33 (A**2) : 0.86200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.622 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2155 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1391 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2917 ; 1.339 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3437 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 5.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;26.242 ;25.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;13.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;14.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2381 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 413 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 491 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1386 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1144 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1059 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 66 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.369 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1445 ; 2.392 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 568 ; 0.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2256 ; 3.214 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 801 ; 2.774 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 661 ; 3.852 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 213 REMARK 3 RESIDUE RANGE : C 144 C 216 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0780 -13.7670 -5.9460 REMARK 3 T TENSOR REMARK 3 T11: -0.1434 T22: -0.0696 REMARK 3 T33: -0.1767 T12: 0.0373 REMARK 3 T13: -0.0367 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.3880 L22: 1.6960 REMARK 3 L33: 4.7569 L12: 1.0052 REMARK 3 L13: 1.1209 L23: 0.6034 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0616 S13: 0.0480 REMARK 3 S21: -0.0791 S22: 0.0536 S23: 0.1036 REMARK 3 S31: -0.0545 S32: 0.0104 S33: -0.0425 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 211 REMARK 3 RESIDUE RANGE : D 144 D 212 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3730 -9.9040 -26.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: -0.1713 REMARK 3 T33: -0.1913 T12: -0.0525 REMARK 3 T13: -0.0980 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.2293 L22: 5.0015 REMARK 3 L33: 3.2281 L12: -1.3197 REMARK 3 L13: 0.9245 L23: 0.3335 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: 0.0884 S13: 0.0839 REMARK 3 S21: -0.3786 S22: 0.0649 S23: 0.3171 REMARK 3 S31: -0.1761 S32: -0.1637 S33: 0.0186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOMIC B FACTORS ARE RESIDUALS FROM TLS REFINEMENT. REMARK 3 PROGRAMS RESOLVE, ARP/WARP, COOT, MOLPROBITY HAVE ALSO BEEN USED REMARK 3 IN REFINEMENT. REMARK 4 REMARK 4 3BPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-07; 14-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; N REMARK 200 RADIATION SOURCE : ROTATING ANODE; ROTATING ANODE REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E; RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS; RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX, RESOLVE, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: A HEAVY ATOM DERIVATIVE WAS PREPARED BY OVERNIGHT SOAKING REMARK 200 OF A PROTEIN CRYSTAL IN A 1:19 MIXTURE OF 0.2M THIMEROSAL AND REMARK 200 CRYOPROTECTANT (25% PEG 3350, 10% PEG, 0.1M SODIUM ACETATE PH REMARK 200 4.6). DIFFRACTION INTENSITIES FOR THIS DERIVATIVE ARE DEPOSITED REMARK 200 WITH CRYSTAL INDEX 2 (INDEX 1 FOR NATIVE INTENSITIES). REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M SODIUM ACETATE. REMARK 280 CHYMOTRYPSIN WAS ADDED TO THE CRYSTALLIZATION SAMPLE AT A MOLAR REMARK 280 RATIO OF APPROX. 1:100, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.45100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.02800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.18650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.02800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.45100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.18650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 141 REMARK 465 VAL A 142 REMARK 465 TYR A 143 REMARK 465 GLU A 214 REMARK 465 LYS A 215 REMARK 465 GLN A 216 REMARK 465 SER A 217 REMARK 465 LYS A 218 REMARK 465 ALA A 219 REMARK 465 LYS A 220 REMARK 465 LYS B 212 REMARK 465 GLN B 213 REMARK 465 GLU B 214 REMARK 465 LYS B 215 REMARK 465 GLN B 216 REMARK 465 SER B 217 REMARK 465 LYS B 218 REMARK 465 ALA B 219 REMARK 465 LYS B 220 REMARK 465 ALA C 141 REMARK 465 VAL C 142 REMARK 465 TYR C 143 REMARK 465 SER C 217 REMARK 465 LYS C 218 REMARK 465 ALA C 219 REMARK 465 LYS C 220 REMARK 465 ALA D 141 REMARK 465 VAL D 142 REMARK 465 TYR D 143 REMARK 465 GLN D 213 REMARK 465 GLU D 214 REMARK 465 LYS D 215 REMARK 465 GLN D 216 REMARK 465 SER D 217 REMARK 465 LYS D 218 REMARK 465 ALA D 219 REMARK 465 LYS D 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 161 CD CE NZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LYS A 172 CD CE NZ REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 LYS B 172 CE NZ REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 ILE B 193 CG1 CG2 CD1 REMARK 470 ASP B 194 CG OD1 OD2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 470 GLU C 158 CG CD OE1 OE2 REMARK 470 LYS C 164 CD CE NZ REMARK 470 LYS C 172 CE NZ REMARK 470 GLU C 181 CD OE1 OE2 REMARK 470 ILE C 193 CG1 CG2 CD1 REMARK 470 ASP C 194 CG OD1 OD2 REMARK 470 LYS C 197 CG CD CE NZ REMARK 470 GLN C 216 CG CD OE1 NE2 REMARK 470 SER D 151 OG REMARK 470 LYS D 172 CD CE NZ REMARK 470 GLU D 181 CG CD OE1 OE2 REMARK 470 ARG D 185 NE CZ NH1 NH2 REMARK 470 GLU D 192 CD OE1 OE2 REMARK 470 ILE D 193 CG1 CG2 CD1 REMARK 470 ASP D 194 CG OD1 OD2 REMARK 470 LYS D 197 CG CD CE NZ REMARK 470 ASN D 201 CG OD1 ND2 REMARK 470 LEU D 203 CG CD1 CD2 REMARK 470 VAL D 205 CG1 CG2 REMARK 470 LEU D 206 CG CD1 CD2 REMARK 470 SER D 208 OG REMARK 470 GLU D 209 CG CD OE1 OE2 REMARK 470 LYS D 210 CG CD CE NZ REMARK 470 GLN D 211 CG CD OE1 NE2 REMARK 470 LYS D 212 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 151 -37.73 -134.07 REMARK 500 SER B 151 -36.81 -135.12 REMARK 500 SER C 151 -50.61 -131.47 REMARK 500 SER D 151 -55.38 -129.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COMPLETE SEQUENCE OF THE CRYSTALLIZED POLYPEPTIDE IS REMARK 999 MHHHHHHSSGRENLYFQGKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQ REMARK 999 LADKLRLKKLQEESDLELAKETFGVNNAVYGIDAMNPSSRDDFTEFGKLLKDKITQ REMARK 999 YEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQSKAK REMARK 999 FROM WHICH MHHHHHHSSGRENLYFQG IS AN EXPRESSION TAG, AND REMARK 999 THE FOLLOWING SEQUENCE MATCHES THE FRAGMENT 76-220 OF REMARK 999 THE UNIPROT ENTRY O75822. REMARK 999 AUTHORS STATE THAT MANY OF THE N-TERMINAL RESIDUES WERE REMARK 999 CLEAVED OFF PRIOR TO THE CRYSTAL FORMATION, BECAUSE OF REMARK 999 THE PRESENCE OF CHYMOTRYPSIN IN CRYSTALLIZATION SOLUTION. REMARK 999 THE PRECISE LOCATION OF THE CLEAVAGE SITE HAS NOT BEEN REMARK 999 DETERMINED. REMARK 999 THEREFORE, THE SEQUENCE INFORMATION, AS WELL AS THE VALUES REMARK 999 OF MATTHEWS COEFFICIENT AND SOLVENT CONTENT ARE BASED ON REMARK 999 THE CHAIN LENGTH STARTING FROM THE FIRST VISIBLE N-TERMINAL REMARK 999 RESIDUE IN ELECTRON DENSITY. DBREF 3BPJ A 141 220 UNP O75822 EIF3J_HUMAN 141 220 DBREF 3BPJ B 141 220 UNP O75822 EIF3J_HUMAN 141 220 DBREF 3BPJ C 141 220 UNP O75822 EIF3J_HUMAN 141 220 DBREF 3BPJ D 141 220 UNP O75822 EIF3J_HUMAN 141 220 SEQRES 1 A 80 ALA VAL TYR GLY ILE ASP ALA MET ASN PRO SER SER ARG SEQRES 2 A 80 ASP ASP PHE THR GLU PHE GLY LYS LEU LEU LYS ASP LYS SEQRES 3 A 80 ILE THR GLN TYR GLU LYS SER LEU TYR TYR ALA SER PHE SEQRES 4 A 80 LEU GLU VAL LEU VAL ARG ASP VAL CYS ILE SER LEU GLU SEQRES 5 A 80 ILE ASP ASP LEU LYS LYS ILE THR ASN SER LEU THR VAL SEQRES 6 A 80 LEU CYS SER GLU LYS GLN LYS GLN GLU LYS GLN SER LYS SEQRES 7 A 80 ALA LYS SEQRES 1 B 80 ALA VAL TYR GLY ILE ASP ALA MET ASN PRO SER SER ARG SEQRES 2 B 80 ASP ASP PHE THR GLU PHE GLY LYS LEU LEU LYS ASP LYS SEQRES 3 B 80 ILE THR GLN TYR GLU LYS SER LEU TYR TYR ALA SER PHE SEQRES 4 B 80 LEU GLU VAL LEU VAL ARG ASP VAL CYS ILE SER LEU GLU SEQRES 5 B 80 ILE ASP ASP LEU LYS LYS ILE THR ASN SER LEU THR VAL SEQRES 6 B 80 LEU CYS SER GLU LYS GLN LYS GLN GLU LYS GLN SER LYS SEQRES 7 B 80 ALA LYS SEQRES 1 C 80 ALA VAL TYR GLY ILE ASP ALA MET ASN PRO SER SER ARG SEQRES 2 C 80 ASP ASP PHE THR GLU PHE GLY LYS LEU LEU LYS ASP LYS SEQRES 3 C 80 ILE THR GLN TYR GLU LYS SER LEU TYR TYR ALA SER PHE SEQRES 4 C 80 LEU GLU VAL LEU VAL ARG ASP VAL CYS ILE SER LEU GLU SEQRES 5 C 80 ILE ASP ASP LEU LYS LYS ILE THR ASN SER LEU THR VAL SEQRES 6 C 80 LEU CYS SER GLU LYS GLN LYS GLN GLU LYS GLN SER LYS SEQRES 7 C 80 ALA LYS SEQRES 1 D 80 ALA VAL TYR GLY ILE ASP ALA MET ASN PRO SER SER ARG SEQRES 2 D 80 ASP ASP PHE THR GLU PHE GLY LYS LEU LEU LYS ASP LYS SEQRES 3 D 80 ILE THR GLN TYR GLU LYS SER LEU TYR TYR ALA SER PHE SEQRES 4 D 80 LEU GLU VAL LEU VAL ARG ASP VAL CYS ILE SER LEU GLU SEQRES 5 D 80 ILE ASP ASP LEU LYS LYS ILE THR ASN SER LEU THR VAL SEQRES 6 D 80 LEU CYS SER GLU LYS GLN LYS GLN GLU LYS GLN SER LYS SEQRES 7 D 80 ALA LYS HET UNX A 4 1 HET UNX B 1 1 HET UNX B 3 1 HET UNX D 2 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 5 UNX 4(X) FORMUL 9 HOH *50(H2 O) HELIX 1 1 SER A 152 THR A 168 1 17 HELIX 2 2 GLN A 169 GLU A 171 5 3 HELIX 3 3 TYR A 175 ILE A 189 1 15 HELIX 4 4 GLU A 192 GLN A 213 1 22 HELIX 5 5 SER B 152 GLN B 169 1 18 HELIX 6 6 TYR B 175 ILE B 189 1 15 HELIX 7 7 GLU B 192 GLN B 211 1 20 HELIX 8 8 SER C 152 THR C 168 1 17 HELIX 9 9 GLN C 169 GLU C 171 5 3 HELIX 10 10 TYR C 175 ILE C 189 1 15 HELIX 11 11 GLU C 192 GLN C 216 1 25 HELIX 12 12 SER D 152 THR D 168 1 17 HELIX 13 13 GLN D 169 GLU D 171 5 3 HELIX 14 14 TYR D 175 ILE D 189 1 15 HELIX 15 15 GLU D 192 LYS D 212 1 21 SITE 1 AC1 3 ASN B 149 LYS C 212 HOH C 228 SITE 1 AC2 1 GLU D 158 SITE 1 AC3 4 VAL B 187 SER B 190 GLU D 171 TYR D 176 SITE 1 AC4 4 ILE A 189 LEU B 162 ASP B 165 HOH B 226 CRYST1 60.902 62.373 88.056 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011356 0.00000