HEADER CYTOKINE/CYTOKINE RECEPTOR 18-DEC-07 3BPL TITLE CRYSTAL STRUCTURE OF THE IL4-IL4R-COMMON GAMMA TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-4, B-CELL STIMULATORY FACTOR 1, BSF-1, LYMPHOCYTE COMPND 5 STIMULATORY FACTOR 1, BINETRAKIN, PITRAKINRA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INTERLEUKIN-4 RECEPTOR ALPHA CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 27-227; COMPND 11 SYNONYM: IL-4R-ALPHA, CD124 ANTIGEN, SOLUBLE INTERLEUKIN-4 RECEPTOR COMPND 12 ALPHA CHAIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: CYTOKINE RECEPTOR COMMON GAMMA CHAIN; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 56-254; COMPND 18 SYNONYM: GAMMA-C, INTERLEUKIN-2 RECEPTOR GAMMA CHAIN, IL-2R GAMMA COMPND 19 CHAIN, P64, CD132 ANTIGEN; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IL4R, 582J2.1, IL4RA; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: IL2RG; SOURCE 24 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 25 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 27 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS IL4, IL13, RECEPTOR, CYTOKINE, B-CELL ACTIVATION, GLYCOPROTEIN, KEYWDS 2 GROWTH FACTOR, SECRETED, IMMUNE RESPONSE, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 3 TRANSMEMBRANE, DISEASE MUTATION, HOST-VIRUS INTERACTION, SCID, KEYWDS 4 CYTOKINE-RECEPTOR COMPLEX, CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.C.GARCIA REVDAT 8 13-NOV-24 3BPL 1 REMARK REVDAT 7 20-OCT-21 3BPL 1 REMARK SEQADV HETSYN REVDAT 6 29-JUL-20 3BPL 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 13-JUL-11 3BPL 1 VERSN REVDAT 4 24-FEB-09 3BPL 1 VERSN REVDAT 3 19-FEB-08 3BPL 1 JRNL REVDAT 2 12-FEB-08 3BPL 1 REMARK REVDAT 1 05-FEB-08 3BPL 0 JRNL AUTH S.L.LAPORTE,Z.S.JUO,J.VACLAVIKOVA,L.A.COLF,X.QI,N.M.HELLER, JRNL AUTH 2 A.D.KEEGAN,K.C.GARCIA JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF CYTOKINE RECEPTOR JRNL TITL 2 PLEIOTROPY IN THE INTERLEUKIN-4/13 SYSTEM. JRNL REF CELL(CAMBRIDGE,MASS.) V. 132 259 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18243101 JRNL DOI 10.1016/J.CELL.2007.12.030 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.5500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4289 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.463 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4532 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6183 ; 1.328 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 2.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;39.334 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 739 ;14.228 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.306 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3412 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1979 ; 0.261 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3040 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.319 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2673 ; 1.518 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4257 ; 2.280 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2131 ; 2.145 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1926 ; 3.287 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1978 -15.0147 -28.8314 REMARK 3 T TENSOR REMARK 3 T11: -0.0491 T22: 0.0095 REMARK 3 T33: -0.0434 T12: -0.0105 REMARK 3 T13: 0.0151 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.5042 L22: 1.2680 REMARK 3 L33: 1.3906 L12: -0.8490 REMARK 3 L13: 0.8868 L23: -0.6138 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: 0.2268 S13: -0.0400 REMARK 3 S21: -0.1601 S22: -0.0300 S23: -0.0742 REMARK 3 S31: 0.0471 S32: 0.0372 S33: -0.0409 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4649 -19.2360 -7.5233 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: -0.0207 REMARK 3 T33: 0.0435 T12: 0.0272 REMARK 3 T13: -0.0098 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.1908 L22: 0.7153 REMARK 3 L33: 1.3778 L12: 0.9748 REMARK 3 L13: -1.2266 L23: -0.7107 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0630 S13: -0.0175 REMARK 3 S21: -0.0417 S22: 0.0597 S23: -0.0058 REMARK 3 S31: -0.0384 S32: -0.0781 S33: -0.0848 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9896 6.3173 1.5042 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: -0.0568 REMARK 3 T33: -0.0363 T12: -0.0112 REMARK 3 T13: 0.0020 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.2506 L22: 2.5349 REMARK 3 L33: 2.0926 L12: 0.4393 REMARK 3 L13: 0.7265 L23: 1.6954 REMARK 3 S TENSOR REMARK 3 S11: -0.0863 S12: -0.1319 S13: 0.1287 REMARK 3 S21: -0.0105 S22: 0.1939 S23: -0.0690 REMARK 3 S31: -0.1062 S32: 0.1231 S33: -0.1076 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 34 C 126 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3492 8.8345 -44.1824 REMARK 3 T TENSOR REMARK 3 T11: -0.0466 T22: 0.0069 REMARK 3 T33: -0.1747 T12: 0.0854 REMARK 3 T13: 0.1384 T23: 0.1915 REMARK 3 L TENSOR REMARK 3 L11: 5.4667 L22: 4.6915 REMARK 3 L33: 3.7120 L12: 0.1597 REMARK 3 L13: -2.1116 L23: -1.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.1683 S12: 0.0888 S13: 0.0735 REMARK 3 S21: -0.5249 S22: -0.2051 S23: -0.4155 REMARK 3 S31: 0.3172 S32: 0.3620 S33: 0.3734 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 127 C 227 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2708 17.9579 -15.8535 REMARK 3 T TENSOR REMARK 3 T11: -0.0187 T22: -0.1791 REMARK 3 T33: -0.0044 T12: -0.0432 REMARK 3 T13: 0.0566 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 0.7907 L22: 2.4103 REMARK 3 L33: 4.4954 L12: -0.5558 REMARK 3 L13: -1.0101 L23: 1.8681 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: 0.1569 S13: 0.1853 REMARK 3 S21: 0.0035 S22: 0.0140 S23: -0.0180 REMARK 3 S31: -0.2147 S32: 0.0389 S33: -0.1003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8K, 8% ETHYLENE GLYCOL, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.28900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.83550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.32600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.83550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.28900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.32600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 LYS A 2 REMARK 465 SER A 129 REMARK 465 TYR B 200 REMARK 465 ARG B 201 REMARK 465 GLU B 202 REMARK 465 THR C 228 REMARK 465 SER C 229 REMARK 465 LYS C 230 REMARK 465 GLU C 231 REMARK 465 ASN C 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS B 182 SG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 145 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 19 -71.97 -51.77 REMARK 500 LYS A 37 39.54 -92.78 REMARK 500 VAL A 101 60.97 -102.08 REMARK 500 MET B 14 -74.41 -134.49 REMARK 500 HIS B 95 56.47 -141.38 REMARK 500 ASP B 143 65.43 -116.62 REMARK 500 SER B 164 8.03 -64.82 REMARK 500 LYS B 167 108.11 -54.70 REMARK 500 SER C 55 22.41 -77.60 REMARK 500 ASN C 71 42.48 37.92 REMARK 500 ASN C 74 70.88 69.20 REMARK 500 LYS C 76 129.58 -39.38 REMARK 500 GLN C 104 110.64 -168.33 REMARK 500 ASP C 181 177.30 -53.37 REMARK 500 TYR C 182 75.88 -64.86 REMARK 500 HIS C 184 54.43 -109.33 REMARK 500 LYS C 185 88.49 -155.33 REMARK 500 SER C 187 117.20 -163.52 REMARK 500 GLN C 194 35.51 -85.01 REMARK 500 SER C 211 70.82 -102.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 179 VAL C 180 145.82 REMARK 500 VAL C 180 ASP C 181 141.03 REMARK 500 TYR C 182 ARG C 183 108.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BPN RELATED DB: PDB REMARK 900 RELATED ID: 3BPO RELATED DB: PDB DBREF 3BPL A 1 129 UNP P05112 IL4_HUMAN 25 153 DBREF 3BPL B 2 202 UNP P24394 IL4RA_HUMAN 27 227 DBREF 3BPL C 34 232 UNP P31785 IL2RG_HUMAN 56 254 SEQADV 3BPL ALA B -2 UNP P24394 EXPRESSION TAG SEQADV 3BPL ASP B -1 UNP P24394 EXPRESSION TAG SEQADV 3BPL PRO B 0 UNP P24394 EXPRESSION TAG SEQADV 3BPL PHE B 1 UNP P24394 EXPRESSION TAG SEQADV 3BPL GLN B 28 UNP P24394 ASN 53 ENGINEERED MUTATION SEQADV 3BPL GLN B 73 UNP P24394 ASN 98 ENGINEERED MUTATION SEQADV 3BPL GLN B 109 UNP P24394 ASN 134 ENGINEERED MUTATION SEQADV 3BPL GLN B 151 UNP P24394 ASN 176 ENGINEERED MUTATION SEQADV 3BPL GLN C 53 UNP P31785 ASN 75 ENGINEERED MUTATION SEQRES 1 A 129 HIS LYS CYS ASP ILE THR LEU GLN GLU ILE ILE LYS THR SEQRES 2 A 129 LEU ASN SER LEU THR GLU GLN LYS THR LEU CYS THR GLU SEQRES 3 A 129 LEU THR VAL THR ASP ILE PHE ALA ALA SER LYS ASN THR SEQRES 4 A 129 THR GLU LYS GLU THR PHE CYS ARG ALA ALA THR VAL LEU SEQRES 5 A 129 ARG GLN PHE TYR SER HIS HIS GLU LYS ASP THR ARG CYS SEQRES 6 A 129 LEU GLY ALA THR ALA GLN GLN PHE HIS ARG HIS LYS GLN SEQRES 7 A 129 LEU ILE ARG PHE LEU LYS ARG LEU ASP ARG ASN LEU TRP SEQRES 8 A 129 GLY LEU ALA GLY LEU ASN SER CYS PRO VAL LYS GLU ALA SEQRES 9 A 129 ASN GLN SER THR LEU GLU ASN PHE LEU GLU ARG LEU LYS SEQRES 10 A 129 THR ILE MET ARG GLU LYS TYR SER LYS CYS SER SER SEQRES 1 B 205 ALA ASP PRO PHE LYS VAL LEU GLN GLU PRO THR CYS VAL SEQRES 2 B 205 SER ASP TYR MET SER ILE SER THR CYS GLU TRP LYS MET SEQRES 3 B 205 ASN GLY PRO THR GLN CYS SER THR GLU LEU ARG LEU LEU SEQRES 4 B 205 TYR GLN LEU VAL PHE LEU LEU SER GLU ALA HIS THR CYS SEQRES 5 B 205 ILE PRO GLU ASN ASN GLY GLY ALA GLY CYS VAL CYS HIS SEQRES 6 B 205 LEU LEU MET ASP ASP VAL VAL SER ALA ASP GLN TYR THR SEQRES 7 B 205 LEU ASP LEU TRP ALA GLY GLN GLN LEU LEU TRP LYS GLY SEQRES 8 B 205 SER PHE LYS PRO SER GLU HIS VAL LYS PRO ARG ALA PRO SEQRES 9 B 205 GLY ASN LEU THR VAL HIS THR GLN VAL SER ASP THR LEU SEQRES 10 B 205 LEU LEU THR TRP SER ASN PRO TYR PRO PRO ASP ASN TYR SEQRES 11 B 205 LEU TYR ASN HIS LEU THR TYR ALA VAL ASN ILE TRP SER SEQRES 12 B 205 GLU ASN ASP PRO ALA ASP PHE ARG ILE TYR GLN VAL THR SEQRES 13 B 205 TYR LEU GLU PRO SER LEU ARG ILE ALA ALA SER THR LEU SEQRES 14 B 205 LYS SER GLY ILE SER TYR ARG ALA ARG VAL ARG ALA TRP SEQRES 15 B 205 ALA GLN CYS TYR ASN THR THR TRP SER GLU TRP SER PRO SEQRES 16 B 205 SER THR LYS TRP HIS ASN SER TYR ARG GLU SEQRES 1 C 199 PRO LEU PRO GLU VAL GLN CYS PHE VAL PHE ASN VAL GLU SEQRES 2 C 199 TYR MET ASN CYS THR TRP GLN SER SER SER GLU PRO GLN SEQRES 3 C 199 PRO THR ASN LEU THR LEU HIS TYR TRP TYR LYS ASN SER SEQRES 4 C 199 ASP ASN ASP LYS VAL GLN LYS CYS SER HIS TYR LEU PHE SEQRES 5 C 199 SER GLU GLU ILE THR SER GLY CYS GLN LEU GLN LYS LYS SEQRES 6 C 199 GLU ILE HIS LEU TYR GLN THR PHE VAL VAL GLN LEU GLN SEQRES 7 C 199 ASP PRO ARG GLU PRO ARG ARG GLN ALA THR GLN MET LEU SEQRES 8 C 199 LYS LEU GLN ASN LEU VAL ILE PRO TRP ALA PRO GLU ASN SEQRES 9 C 199 LEU THR LEU HIS LYS LEU SER GLU SER GLN LEU GLU LEU SEQRES 10 C 199 ASN TRP ASN ASN ARG PHE LEU ASN HIS CYS LEU GLU HIS SEQRES 11 C 199 LEU VAL GLN TYR ARG THR ASP TRP ASP HIS SER TRP THR SEQRES 12 C 199 GLU GLN SER VAL ASP TYR ARG HIS LYS PHE SER LEU PRO SEQRES 13 C 199 SER VAL ASP GLY GLN LYS ARG TYR THR PHE ARG VAL ARG SEQRES 14 C 199 SER ARG PHE ASN PRO LEU CYS GLY SER ALA GLN HIS TRP SEQRES 15 C 199 SER GLU TRP SER HIS PRO ILE HIS TRP GLY SER ASN THR SEQRES 16 C 199 SER LYS GLU ASN MODRES 3BPL ASN B 103 ASN GLYCOSYLATION SITE MODRES 3BPL ASN B 184 ASN GLYCOSYLATION SITE MODRES 3BPL ASN C 49 ASN GLYCOSYLATION SITE MODRES 3BPL ASN C 62 ASN GLYCOSYLATION SITE MODRES 3BPL ASN C 137 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG C 921 14 HET NAG C 931 14 HET NAG C 941 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 7(C8 H15 N O6) FORMUL 5 FUC C6 H12 O5 FORMUL 9 HOH *137(H2 O) HELIX 1 1 ASP A 4 GLN A 20 1 17 HELIX 2 2 THR A 40 GLU A 60 1 21 HELIX 3 3 THR A 69 GLY A 95 1 27 HELIX 4 4 LEU A 109 CYS A 127 1 19 HELIX 5 5 GLN B 28 LEU B 33 1 6 HELIX 6 6 LYS B 91 HIS B 95 5 5 HELIX 7 7 LEU B 128 LEU B 132 5 5 HELIX 8 8 SER B 164 LEU B 166 5 3 HELIX 9 9 ALA B 180 ASN B 184 5 5 HELIX 10 10 GLN C 53 GLU C 57 5 5 HELIX 11 11 LYS C 98 ILE C 100 5 3 HELIX 12 12 LYS C 125 ASN C 128 5 4 HELIX 13 13 LEU C 157 HIS C 159 5 3 SHEET 1 A 2 THR A 28 THR A 30 0 SHEET 2 A 2 GLN A 106 THR A 108 -1 O SER A 107 N VAL A 29 SHEET 1 B 4 THR B 8 SER B 11 0 SHEET 2 B 4 ILE B 16 LYS B 22 -1 O GLU B 20 N THR B 8 SHEET 3 B 4 GLY B 58 LEU B 64 -1 O LEU B 63 N SER B 17 SHEET 4 B 4 GLU B 52 ASN B 53 -1 N GLU B 52 O VAL B 60 SHEET 1 C 4 HIS B 47 CYS B 49 0 SHEET 2 C 4 ARG B 34 LEU B 39 -1 N TYR B 37 O HIS B 47 SHEET 3 C 4 TYR B 74 ALA B 80 -1 O TRP B 79 N ARG B 34 SHEET 4 C 4 GLN B 83 PHE B 90 -1 O LEU B 85 N LEU B 78 SHEET 1 D 3 GLY B 102 HIS B 107 0 SHEET 2 D 3 THR B 113 SER B 119 -1 O SER B 119 N GLY B 102 SHEET 3 D 3 SER B 158 ALA B 162 -1 O ILE B 161 N LEU B 114 SHEET 1 E 4 PHE B 147 VAL B 152 0 SHEET 2 E 4 THR B 133 SER B 140 -1 N ILE B 138 O ARG B 148 SHEET 3 E 4 SER B 171 TRP B 179 -1 O ARG B 173 N TRP B 139 SHEET 4 E 4 THR B 194 HIS B 197 -1 O TRP B 196 N TYR B 172 SHEET 1 F 5 TYR C 83 SER C 86 0 SHEET 2 F 5 ILE C 89 GLN C 96 -1 O ILE C 89 N SER C 86 SHEET 3 F 5 TYR C 47 THR C 51 -1 N CYS C 50 O CYS C 93 SHEET 4 F 5 GLN C 39 PHE C 43 -1 N PHE C 43 O TYR C 47 SHEET 5 F 5 VAL C 130 ILE C 131 1 O ILE C 131 N VAL C 42 SHEET 1 G 4 GLN C 78 LYS C 79 0 SHEET 2 G 4 THR C 64 TYR C 69 -1 N TYR C 67 O GLN C 78 SHEET 3 G 4 PHE C 106 ASP C 112 -1 O GLN C 111 N THR C 64 SHEET 4 G 4 GLU C 115 LEU C 124 -1 O LEU C 124 N PHE C 106 SHEET 1 H 3 GLU C 136 LYS C 142 0 SHEET 2 H 3 LEU C 148 ASN C 153 -1 O GLU C 149 N HIS C 141 SHEET 3 H 3 LYS C 185 LEU C 188 -1 O LEU C 188 N LEU C 148 SHEET 1 I 4 THR C 176 VAL C 180 0 SHEET 2 I 4 LEU C 161 THR C 169 -1 N VAL C 165 O GLN C 178 SHEET 3 I 4 TYR C 197 PHE C 205 -1 O ARG C 200 N GLN C 166 SHEET 4 I 4 ILE C 222 TRP C 224 -1 O ILE C 222 N PHE C 199 SSBOND 1 CYS A 3 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 24 CYS A 65 1555 1555 2.04 SSBOND 3 CYS A 46 CYS A 99 1555 1555 2.03 SSBOND 4 CYS B 9 CYS B 19 1555 1555 2.06 SSBOND 5 CYS B 29 CYS B 59 1555 1555 2.06 SSBOND 6 CYS B 49 CYS B 61 1555 1555 2.06 SSBOND 7 CYS C 40 CYS C 50 1555 1555 2.05 SSBOND 8 CYS C 80 CYS C 93 1555 1555 2.04 SSBOND 9 CYS C 160 CYS C 209 1555 1555 2.05 LINK ND2 ASN B 103 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN B 184 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN C 49 C1 NAG C 921 1555 1555 1.47 LINK ND2 ASN C 62 C1 NAG C 931 1555 1555 1.45 LINK ND2 ASN C 137 C1 NAG C 941 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.42 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.43 CISPEP 1 ASN C 206 PRO C 207 0 -8.41 CRYST1 52.578 86.652 175.671 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005692 0.00000