HEADER VIRAL PROTEIN 20-DEC-07 3BQJ TITLE VA387 POLYPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VA387 POLYPEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P POLYPEPTIDE (RESIDUES 225-529); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS ISOLATES; SOURCE 3 ORGANISM_TAXID: 150080; SOURCE 4 GENE: VP1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS VA387 POLYPEPTIDE (RESIDUES 230-529), TWO FOLDED UNITS P1 AND P2, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.BU,A.MAMEDOVA,M.TAN,J.JIANG,R.HEGDE REVDAT 6 21-FEB-24 3BQJ 1 REMARK REVDAT 5 24-JUL-19 3BQJ 1 REMARK REVDAT 4 25-OCT-17 3BQJ 1 REMARK REVDAT 3 24-FEB-09 3BQJ 1 VERSN REVDAT 2 27-MAY-08 3BQJ 1 JRNL REVDAT 1 22-APR-08 3BQJ 0 JRNL AUTH W.BU,A.MAMEDOVA,M.TAN,M.XIA,X.JIANG,R.S.HEGDE JRNL TITL STRUCTURAL BASIS FOR THE RECEPTOR BINDING SPECIFICITY OF JRNL TITL 2 NORWALK VIRUS. JRNL REF J.VIROL. V. 82 5340 2008 JRNL REFN ISSN 0022-538X JRNL PMID 18385236 JRNL DOI 10.1128/JVI.00135-08 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 8737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.71900 REMARK 3 B22 (A**2) : 6.43900 REMARK 3 B33 (A**2) : 4.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.349 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.363 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 40.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.502 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BLUE OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4K, 3% 5-DIAMINOPENTANE, TRIS, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.36600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.36600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.18000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.18000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.36600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.18000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.40000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.36600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.18000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.40000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 254 REMARK 465 SER A 296 REMARK 465 HIS A 297 REMARK 465 ASN A 372 REMARK 465 ASN A 373 REMARK 465 ASP A 374 REMARK 465 GLY A 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ASN A 397 N GLU A 398 1.34 REMARK 500 O VAL A 290 O HOH A 116 1.40 REMARK 500 C ASN A 397 CA GLU A 398 1.56 REMARK 500 N ASN A 397 N GLU A 398 1.57 REMARK 500 CA PRO A 399 N GLY A 400 1.60 REMARK 500 O PRO A 399 O HOH A 148 1.81 REMARK 500 CG1 VAL A 290 O HOH A 118 1.91 REMARK 500 CD1 LEU A 249 O HOH A 179 2.06 REMARK 500 OE1 GLN A 390 OD1 ASN A 397 2.10 REMARK 500 CG1 VAL A 327 O HOH A 129 2.12 REMARK 500 O HOH A 86 O HOH A 87 2.13 REMARK 500 O GLY A 400 N TRP A 402 2.17 REMARK 500 CA THR A 377 O HOH A 116 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 396 C ASN A 397 N 0.246 REMARK 500 ASN A 397 C GLU A 398 N -0.157 REMARK 500 GLU A 398 C PRO A 399 N -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 396 CA - C - N ANGL. DEV. = 24.9 DEGREES REMARK 500 GLN A 396 O - C - N ANGL. DEV. = -33.1 DEGREES REMARK 500 ASN A 397 C - N - CA ANGL. DEV. = 28.5 DEGREES REMARK 500 ASN A 397 CA - C - N ANGL. DEV. = -59.8 DEGREES REMARK 500 GLU A 398 C - N - CA ANGL. DEV. = -50.2 DEGREES REMARK 500 GLU A 398 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO A 399 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 399 C - N - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 PRO A 399 CA - C - N ANGL. DEV. = -47.2 DEGREES REMARK 500 PRO A 399 O - C - N ANGL. DEV. = 31.2 DEGREES REMARK 500 GLY A 400 C - N - CA ANGL. DEV. = -33.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 243 85.70 -61.95 REMARK 500 LYS A 248 -176.86 -170.14 REMARK 500 ALA A 256 46.38 -105.49 REMARK 500 GLN A 260 74.44 -157.56 REMARK 500 ASN A 309 -165.90 -78.34 REMARK 500 GLU A 315 140.17 -30.24 REMARK 500 ALA A 319 -179.27 -174.10 REMARK 500 THR A 338 90.87 -64.14 REMARK 500 ARG A 339 153.63 -11.38 REMARK 500 GLU A 340 74.21 -1.16 REMARK 500 ASP A 341 -54.36 -160.63 REMARK 500 SER A 343 154.29 -48.97 REMARK 500 ALA A 349 147.17 -173.12 REMARK 500 VAL A 356 5.33 -52.96 REMARK 500 THR A 359 61.12 -117.73 REMARK 500 THR A 369 -162.76 -51.17 REMARK 500 GLN A 376 172.10 -55.38 REMARK 500 ASN A 397 -6.75 -164.68 REMARK 500 GLU A 398 -156.16 -147.44 REMARK 500 PRO A 399 104.79 13.39 REMARK 500 THR A 411 -28.83 -35.91 REMARK 500 ALA A 422 138.72 -177.66 REMARK 500 PHE A 425 155.87 -45.14 REMARK 500 SER A 441 136.17 177.16 REMARK 500 GLN A 468 -10.97 -42.36 REMARK 500 ASP A 480 -73.34 -76.88 REMARK 500 ALA A 499 79.02 -66.14 REMARK 500 HIS A 504 106.17 168.39 REMARK 500 SER A 518 169.04 177.57 REMARK 500 PRO A 528 -179.02 -46.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 396 ASN A 397 -115.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 396 -21.53 REMARK 500 ASN A 397 -27.18 REMARK 500 GLU A 398 18.83 REMARK 500 PRO A 399 -11.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OBR RELATED DB: PDB REMARK 900 VA387 P-DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT DATABASE AT REMARK 999 THE TIME OF PROCESSING. DBREF 3BQJ A 225 529 PDB 3BQJ 3BQJ 225 529 SEQRES 1 A 304 ALA PRO PHE THR GLY PRO ILE LEU THR VAL GLU GLU MET SEQRES 2 A 304 SER ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU TYR SEQRES 3 A 304 THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO GLN ASN SEQRES 4 A 304 GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR THR SEQRES 5 A 304 GLN LEU SER ALA VAL ASN ILE CYS THR PHE ARG GLY ASP SEQRES 6 A 304 VAL THR GLY VAL ALA GLY SER HIS ASP TYR ILE MET ASN SEQRES 7 A 304 LEU ALA SER GLN ASN TRP ASN ASN TYR ASP PRO THR GLU SEQRES 8 A 304 GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL GLY SEQRES 9 A 304 LYS ILE GLN GLY MET LEU THR GLN THR THR ARG GLU ASP SEQRES 10 A 304 GLY SER THR ARG ALA HIS LYS ALA THR VAL SER THR GLY SEQRES 11 A 304 SER VAL HIS PHE THR PRO LYS LEU GLY SER VAL GLN TYR SEQRES 12 A 304 THR THR ASP THR ASN ASN ASP LEU GLN THR GLY GLN ASN SEQRES 13 A 304 THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY ASN SEQRES 14 A 304 HIS GLN ASN GLU PRO GLY GLY TRP VAL LEU PRO ASN TYR SEQRES 15 A 304 SER GLY ARG THR GLY HIS ASN VAL HIS LEU ALA PRO ALA SEQRES 16 A 304 VAL ALA PRO THR PHE PRO GLY GLU GLN LEU LEU PHE PHE SEQRES 17 A 304 ARG SER THR MET PRO GLY CYS SER GLY TYR PRO ASN MET SEQRES 18 A 304 ASN LEU ASP CYS LEU LEU PRO GLN GLU TRP VAL GLN HIS SEQRES 19 A 304 PHE TYR GLN GLU ALA ALA PRO ALA GLN SER ASP VAL ALA SEQRES 20 A 304 LEU LEU ARG PHE VAL ASN PRO ASP THR GLY ARG VAL LEU SEQRES 21 A 304 PHE GLU CYS LYS LEU HIS LYS SER GLY TYR VAL THR VAL SEQRES 22 A 304 ALA HIS THR GLY PRO HIS ASP LEU VAL ILE PRO PRO ASN SEQRES 23 A 304 GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR SEQRES 24 A 304 THR LEU ALA PRO MET FORMUL 2 HOH *102(H2 O) HELIX 1 1 THR A 233 MET A 237 5 5 HELIX 2 2 PRO A 453 ALA A 464 1 12 SHEET 1 A 6 LYS A 248 GLY A 252 0 SHEET 2 A 6 GLN A 429 ARG A 434 -1 O PHE A 432 N TYR A 250 SHEET 3 A 6 TYR A 495 VAL A 498 -1 O VAL A 496 N LEU A 431 SHEET 4 A 6 ARG A 483 HIS A 491 -1 N LYS A 489 O THR A 497 SHEET 5 A 6 VAL A 471 ASN A 478 -1 N PHE A 476 O PHE A 486 SHEET 6 A 6 TYR A 513 VAL A 520 -1 O SER A 518 N LEU A 473 SHEET 1 B 6 THR A 344 SER A 352 0 SHEET 2 B 6 LYS A 329 THR A 337 -1 N GLY A 332 O ALA A 349 SHEET 3 B 6 ASN A 380 ILE A 389 -1 O LYS A 382 N THR A 335 SHEET 4 B 6 PHE A 286 THR A 291 -1 N PHE A 286 O PHE A 383 SHEET 5 B 6 TYR A 299 ASN A 302 -1 O ASN A 302 N ASP A 289 SHEET 6 B 6 SER A 364 TYR A 367 -1 O VAL A 365 N MET A 301 CRYST1 54.360 96.800 118.732 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008422 0.00000