HEADER TRANSCRIPTION 21-DEC-07 3BRJ TITLE CRYSTAL STRUCTURE OF MANNITOL OPERON REPRESSOR (MTLR) FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS RIMD 2210633 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNITOL OPERON REPRESSOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 5 GENE: VP0368; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC85967.1, MANNITOL OPERON REPRESSOR, MTLR, VIBRIO PARAHAEMOLYTICUS KEYWDS 2 RIMD 2210633, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 13-JUL-11 3BRJ 1 VERSN REVDAT 3 12-JAN-10 3BRJ 1 JRNL REVDAT 2 24-FEB-09 3BRJ 1 VERSN REVDAT 1 15-JAN-08 3BRJ 0 JRNL AUTH K.TAN,S.CLANCY,M.BOROVILOS,M.ZHOU,S.HORER,S.MOY,L.L.VOLKART, JRNL AUTH 2 J.SASSOON,U.BAUMANN,A.JOACHIMIAK JRNL TITL THE MANNITOL OPERON REPRESSOR MTLR BELONGS TO A NEW CLASS OF JRNL TITL 2 TRANSCRIPTION REGULATORS IN BACTERIA. JRNL REF J.BIOL.CHEM. V. 284 36670 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19840941 JRNL DOI 10.1074/JBC.M109.062679 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1443 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5405 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7294 ; 1.926 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 7.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;41.166 ;26.090 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1016 ;24.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;23.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 846 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4016 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2748 ; 0.275 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3753 ; 0.337 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.275 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3385 ; 1.123 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5394 ; 1.853 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2165 ; 1.104 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1899 ; 1.725 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0240 -6.5340 158.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: -0.2225 REMARK 3 T33: -0.3201 T12: 0.0279 REMARK 3 T13: 0.1122 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 7.2462 L22: 6.8477 REMARK 3 L33: 3.4215 L12: -4.6518 REMARK 3 L13: 0.9057 L23: -2.2633 REMARK 3 S TENSOR REMARK 3 S11: -0.2526 S12: -0.7485 S13: -0.1959 REMARK 3 S21: 1.0920 S22: 0.3597 S23: 0.2174 REMARK 3 S31: -0.1880 S32: -0.2384 S33: -0.1070 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6590 24.4850 137.8960 REMARK 3 T TENSOR REMARK 3 T11: -0.1383 T22: -0.1330 REMARK 3 T33: -0.0794 T12: 0.0578 REMARK 3 T13: 0.0816 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 5.4253 L22: 5.1197 REMARK 3 L33: 2.4350 L12: -4.3523 REMARK 3 L13: 1.6657 L23: -2.4123 REMARK 3 S TENSOR REMARK 3 S11: -0.1728 S12: -0.2846 S13: -0.2563 REMARK 3 S21: 0.3336 S22: -0.0075 S23: 0.3087 REMARK 3 S31: -0.2003 S32: -0.1369 S33: 0.1803 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 172 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6650 26.7660 117.7680 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: -0.0282 REMARK 3 T33: -0.2187 T12: 0.1247 REMARK 3 T13: -0.0277 T23: 0.1285 REMARK 3 L TENSOR REMARK 3 L11: 6.9168 L22: 7.2818 REMARK 3 L33: 3.5260 L12: -4.1601 REMARK 3 L13: -1.3440 L23: 0.5600 REMARK 3 S TENSOR REMARK 3 S11: 0.4430 S12: 0.6181 S13: 0.7561 REMARK 3 S21: -1.0334 S22: -0.4246 S23: -0.0299 REMARK 3 S31: -0.5817 S32: -0.3349 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 172 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5480 -11.3900 132.8550 REMARK 3 T TENSOR REMARK 3 T11: -0.2712 T22: -0.1674 REMARK 3 T33: -0.2967 T12: 0.0283 REMARK 3 T13: 0.0123 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.4675 L22: 7.3335 REMARK 3 L33: 2.6545 L12: -2.2799 REMARK 3 L13: 0.2886 L23: -2.1177 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.0221 S13: -0.1628 REMARK 3 S21: -0.0566 S22: -0.1025 S23: -0.6447 REMARK 3 S31: 0.1116 S32: 0.2725 S33: 0.1542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB045878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927, 0.97941 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-AMMONIUM CITRATE, 20% W/V PEG REMARK 280 3350, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.77500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 170.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 ASP C 3 REMARK 465 ASN C 4 REMARK 465 ILE C 5 REMARK 465 GLU C 134 REMARK 465 PRO C 135 REMARK 465 ASP C 136 REMARK 465 ASP C 137 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 ALA D 2 REMARK 465 ASP D 3 REMARK 465 ASN D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 70 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 70 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -29.09 -31.89 REMARK 500 ASP A 46 -115.21 -144.19 REMARK 500 ASN A 47 136.52 -32.96 REMARK 500 LEU A 64 36.01 -99.60 REMARK 500 GLN A 129 -153.97 -176.57 REMARK 500 LEU A 130 -170.50 176.86 REMARK 500 GLU A 131 127.96 -177.17 REMARK 500 GLU A 134 -129.98 -157.67 REMARK 500 ASP A 137 -137.89 -127.62 REMARK 500 ASP A 140 -16.82 -162.91 REMARK 500 GLU A 142 -74.66 -56.20 REMARK 500 ILE B 5 -95.36 -15.69 REMARK 500 SER B 16 -38.47 -26.77 REMARK 500 ARG B 44 97.35 -35.73 REMARK 500 LYS B 45 -26.77 -25.07 REMARK 500 ASN B 47 124.63 -39.60 REMARK 500 ARG C 44 105.19 -20.48 REMARK 500 ASP C 46 -148.57 -83.29 REMARK 500 ASN C 47 91.26 40.26 REMARK 500 MSE C 125 46.66 -104.70 REMARK 500 GLU C 131 140.69 -170.89 REMARK 500 VAL C 132 -137.08 -95.08 REMARK 500 ASP C 140 88.14 43.10 REMARK 500 GLN C 149 -48.59 -28.68 REMARK 500 ARG C 150 -84.21 -69.58 REMARK 500 GLN C 151 -42.56 -23.70 REMARK 500 GLU D 7 -16.78 -26.75 REMARK 500 ALA D 17 108.93 -54.39 REMARK 500 ALA D 49 -70.26 -37.33 REMARK 500 ASP D 136 -72.49 -82.09 REMARK 500 ASP D 137 102.63 -56.18 REMARK 500 ASP D 140 52.27 -67.85 REMARK 500 LEU D 141 -68.86 -23.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP B 46 24.5 L L OUTSIDE RANGE REMARK 500 HIS C 97 21.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 174 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85967.1 RELATED DB: TARGETDB DBREF 3BRJ A 1 172 UNP Q87SQ4 Q87SQ4_VIBPA 1 172 DBREF 3BRJ B 1 172 UNP Q87SQ4 Q87SQ4_VIBPA 1 172 DBREF 3BRJ C 1 172 UNP Q87SQ4 Q87SQ4_VIBPA 1 172 DBREF 3BRJ D 1 172 UNP Q87SQ4 Q87SQ4_VIBPA 1 172 SEQADV 3BRJ SER A -2 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ASN A -1 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ALA A 0 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ SER B -2 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ASN B -1 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ALA B 0 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ SER C -2 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ASN C -1 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ALA C 0 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ SER D -2 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ASN D -1 UNP Q87SQ4 EXPRESSION TAG SEQADV 3BRJ ALA D 0 UNP Q87SQ4 EXPRESSION TAG SEQRES 1 A 175 SER ASN ALA MSE ALA ASP ASN ILE ASN GLU SER GLU ILE SEQRES 2 A 175 ILE GLU ARG LEU ASN SER ALA PRO SER VAL ARG GLY PHE SEQRES 3 A 175 PHE ILE ALA THR VAL ASP VAL PHE ASN GLU SER ILE ASP SEQRES 4 A 175 GLY LEU ILE GLN ARG ILE PHE ARG LYS ASP ASN PHE ALA SEQRES 5 A 175 VAL GLN SER VAL VAL GLY PRO LEU LEU GLN ASP SER GLY SEQRES 6 A 175 PRO LEU GLY ASP LEU SER VAL ARG LEU LYS LEU LEU PHE SEQRES 7 A 175 GLY LEU GLY VAL LEU PRO ASP ASP ILE TYR HIS ASP ILE SEQRES 8 A 175 GLU ASP ILE ILE LYS LEU LYS ASN HIS LEU ASN SER ASP SEQRES 9 A 175 ALA SER ASP TYR GLU PHE THR ASP PRO ASN ILE LEU GLU SEQRES 10 A 175 PRO ILE LYS LYS LEU HIS LEU VAL LYS LYS MSE GLY MSE SEQRES 11 A 175 VAL GLN LEU GLU VAL ASN GLU PRO ASP ASP ASP ILE ASP SEQRES 12 A 175 LEU GLU PHE TYR GLN LEU GLN LEU GLN ARG GLN GLN GLN SEQRES 13 A 175 ILE ILE LYS SER GLY LEU SER LEU ALA ILE VAL GLU ILE SEQRES 14 A 175 CYS ASN GLU LEU GLY LYS SEQRES 1 B 175 SER ASN ALA MSE ALA ASP ASN ILE ASN GLU SER GLU ILE SEQRES 2 B 175 ILE GLU ARG LEU ASN SER ALA PRO SER VAL ARG GLY PHE SEQRES 3 B 175 PHE ILE ALA THR VAL ASP VAL PHE ASN GLU SER ILE ASP SEQRES 4 B 175 GLY LEU ILE GLN ARG ILE PHE ARG LYS ASP ASN PHE ALA SEQRES 5 B 175 VAL GLN SER VAL VAL GLY PRO LEU LEU GLN ASP SER GLY SEQRES 6 B 175 PRO LEU GLY ASP LEU SER VAL ARG LEU LYS LEU LEU PHE SEQRES 7 B 175 GLY LEU GLY VAL LEU PRO ASP ASP ILE TYR HIS ASP ILE SEQRES 8 B 175 GLU ASP ILE ILE LYS LEU LYS ASN HIS LEU ASN SER ASP SEQRES 9 B 175 ALA SER ASP TYR GLU PHE THR ASP PRO ASN ILE LEU GLU SEQRES 10 B 175 PRO ILE LYS LYS LEU HIS LEU VAL LYS LYS MSE GLY MSE SEQRES 11 B 175 VAL GLN LEU GLU VAL ASN GLU PRO ASP ASP ASP ILE ASP SEQRES 12 B 175 LEU GLU PHE TYR GLN LEU GLN LEU GLN ARG GLN GLN GLN SEQRES 13 B 175 ILE ILE LYS SER GLY LEU SER LEU ALA ILE VAL GLU ILE SEQRES 14 B 175 CYS ASN GLU LEU GLY LYS SEQRES 1 C 175 SER ASN ALA MSE ALA ASP ASN ILE ASN GLU SER GLU ILE SEQRES 2 C 175 ILE GLU ARG LEU ASN SER ALA PRO SER VAL ARG GLY PHE SEQRES 3 C 175 PHE ILE ALA THR VAL ASP VAL PHE ASN GLU SER ILE ASP SEQRES 4 C 175 GLY LEU ILE GLN ARG ILE PHE ARG LYS ASP ASN PHE ALA SEQRES 5 C 175 VAL GLN SER VAL VAL GLY PRO LEU LEU GLN ASP SER GLY SEQRES 6 C 175 PRO LEU GLY ASP LEU SER VAL ARG LEU LYS LEU LEU PHE SEQRES 7 C 175 GLY LEU GLY VAL LEU PRO ASP ASP ILE TYR HIS ASP ILE SEQRES 8 C 175 GLU ASP ILE ILE LYS LEU LYS ASN HIS LEU ASN SER ASP SEQRES 9 C 175 ALA SER ASP TYR GLU PHE THR ASP PRO ASN ILE LEU GLU SEQRES 10 C 175 PRO ILE LYS LYS LEU HIS LEU VAL LYS LYS MSE GLY MSE SEQRES 11 C 175 VAL GLN LEU GLU VAL ASN GLU PRO ASP ASP ASP ILE ASP SEQRES 12 C 175 LEU GLU PHE TYR GLN LEU GLN LEU GLN ARG GLN GLN GLN SEQRES 13 C 175 ILE ILE LYS SER GLY LEU SER LEU ALA ILE VAL GLU ILE SEQRES 14 C 175 CYS ASN GLU LEU GLY LYS SEQRES 1 D 175 SER ASN ALA MSE ALA ASP ASN ILE ASN GLU SER GLU ILE SEQRES 2 D 175 ILE GLU ARG LEU ASN SER ALA PRO SER VAL ARG GLY PHE SEQRES 3 D 175 PHE ILE ALA THR VAL ASP VAL PHE ASN GLU SER ILE ASP SEQRES 4 D 175 GLY LEU ILE GLN ARG ILE PHE ARG LYS ASP ASN PHE ALA SEQRES 5 D 175 VAL GLN SER VAL VAL GLY PRO LEU LEU GLN ASP SER GLY SEQRES 6 D 175 PRO LEU GLY ASP LEU SER VAL ARG LEU LYS LEU LEU PHE SEQRES 7 D 175 GLY LEU GLY VAL LEU PRO ASP ASP ILE TYR HIS ASP ILE SEQRES 8 D 175 GLU ASP ILE ILE LYS LEU LYS ASN HIS LEU ASN SER ASP SEQRES 9 D 175 ALA SER ASP TYR GLU PHE THR ASP PRO ASN ILE LEU GLU SEQRES 10 D 175 PRO ILE LYS LYS LEU HIS LEU VAL LYS LYS MSE GLY MSE SEQRES 11 D 175 VAL GLN LEU GLU VAL ASN GLU PRO ASP ASP ASP ILE ASP SEQRES 12 D 175 LEU GLU PHE TYR GLN LEU GLN LEU GLN ARG GLN GLN GLN SEQRES 13 D 175 ILE ILE LYS SER GLY LEU SER LEU ALA ILE VAL GLU ILE SEQRES 14 D 175 CYS ASN GLU LEU GLY LYS MODRES 3BRJ MSE A 125 MET SELENOMETHIONINE MODRES 3BRJ MSE A 127 MET SELENOMETHIONINE MODRES 3BRJ MSE B 125 MET SELENOMETHIONINE MODRES 3BRJ MSE B 127 MET SELENOMETHIONINE MODRES 3BRJ MSE C 125 MET SELENOMETHIONINE MODRES 3BRJ MSE C 127 MET SELENOMETHIONINE MODRES 3BRJ MSE D 125 MET SELENOMETHIONINE MODRES 3BRJ MSE D 127 MET SELENOMETHIONINE HET MSE A 125 8 HET MSE A 127 13 HET MSE B 125 8 HET MSE B 127 8 HET MSE C 125 8 HET MSE C 127 8 HET MSE D 125 8 HET MSE D 127 8 HET EDO C 173 4 HET EDO D 173 4 HET EDO A 173 4 HET EDO B 173 4 HET GOL B 174 6 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *30(H2 O) HELIX 1 1 ILE A 10 ALA A 17 1 8 HELIX 2 2 SER A 19 PHE A 43 1 25 HELIX 3 3 ASN A 47 GLN A 59 1 13 HELIX 4 4 ASP A 66 LEU A 77 1 12 HELIX 5 5 PRO A 81 SER A 100 1 20 HELIX 6 6 ASP A 109 LYS A 117 1 9 HELIX 7 7 LEU A 119 MSE A 125 1 7 HELIX 8 8 ASP A 140 GLY A 171 1 32 HELIX 9 9 ASN B 4 ALA B 17 1 14 HELIX 10 10 SER B 19 PHE B 43 1 25 HELIX 11 11 ASN B 47 GLN B 59 1 13 HELIX 12 12 ASP B 66 LEU B 77 1 12 HELIX 13 13 PRO B 81 ASP B 101 1 21 HELIX 14 14 ASP B 109 LEU B 119 1 11 HELIX 15 15 LEU B 119 GLY B 126 1 8 HELIX 16 16 PHE B 143 LYS B 172 1 30 HELIX 17 17 SER C 8 SER C 16 1 9 HELIX 18 18 SER C 19 ILE C 42 1 24 HELIX 19 19 ASN C 47 GLN C 59 1 13 HELIX 20 20 ASP C 66 LEU C 77 1 12 HELIX 21 21 PRO C 81 ASN C 99 1 19 HELIX 22 22 ASP C 109 LEU C 119 1 11 HELIX 23 23 LEU C 119 LYS C 124 1 6 HELIX 24 24 LEU C 141 GLY C 171 1 31 HELIX 25 25 ASN D 6 ALA D 17 1 12 HELIX 26 26 SER D 19 PHE D 43 1 25 HELIX 27 27 ASN D 47 GLN D 59 1 13 HELIX 28 28 ASP D 66 LEU D 77 1 12 HELIX 29 29 PRO D 81 SER D 100 1 20 HELIX 30 30 ASP D 109 LEU D 119 1 11 HELIX 31 31 LEU D 119 GLY D 126 1 8 HELIX 32 32 ASP D 140 GLY D 171 1 32 LINK C LYS A 124 N MSE A 125 1555 1555 1.34 LINK C MSE A 125 N GLY A 126 1555 1555 1.34 LINK C GLY A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N VAL A 128 1555 1555 1.34 LINK C LYS B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N GLY B 126 1555 1555 1.32 LINK C GLY B 126 N MSE B 127 1555 1555 1.30 LINK C MSE B 127 N VAL B 128 1555 1555 1.33 LINK C LYS C 124 N MSE C 125 1555 1555 1.34 LINK C MSE C 125 N GLY C 126 1555 1555 1.33 LINK C GLY C 126 N MSE C 127 1555 1555 1.33 LINK C MSE C 127 N VAL C 128 1555 1555 1.35 LINK C LYS D 124 N MSE D 125 1555 1555 1.34 LINK C MSE D 125 N GLY D 126 1555 1555 1.32 LINK C GLY D 126 N MSE D 127 1555 1555 1.33 LINK C MSE D 127 N VAL D 128 1555 1555 1.33 CISPEP 1 GLU A 134 PRO A 135 0 1.64 SITE 1 AC1 2 LEU C 67 LYS C 95 SITE 1 AC2 2 VAL D 28 LYS D 95 SITE 1 AC3 2 ASP A 66 LEU A 67 SITE 1 AC4 4 VAL B 28 ILE B 92 LYS B 95 ASN B 96 SITE 1 AC5 7 ARG B 150 GLN B 153 SER B 157 ARG D 150 SITE 2 AC5 7 GLN D 153 ILE D 154 SER D 157 CRYST1 63.281 63.281 227.100 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004403 0.00000