data_3BS3 # _entry.id 3BS3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BS3 RCSB RCSB045898 WWPDB D_1000045898 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC89109 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3BS3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Bigelow, L.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The structure of a putative DNA-binding protein from Bacteroides fragilis.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Bigelow, L.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 63.337 _cell.length_b 63.337 _cell.length_c 34.706 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3BS3 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3BS3 _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative DNA-binding protein' 8987.688 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 83 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SNNQQ(MSE)(MSE)LNRIKVVLAEKQRTNRWLAEQ(MSE)GKSENTISRWCSNKSQPSLD(MSE)LVKVAE LLNVDPRQLINGKIKI ; _entity_poly.pdbx_seq_one_letter_code_can SNAMSNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIKI _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC89109 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 ASN n 1 7 ASN n 1 8 GLN n 1 9 GLN n 1 10 MSE n 1 11 MSE n 1 12 LEU n 1 13 ASN n 1 14 ARG n 1 15 ILE n 1 16 LYS n 1 17 VAL n 1 18 VAL n 1 19 LEU n 1 20 ALA n 1 21 GLU n 1 22 LYS n 1 23 GLN n 1 24 ARG n 1 25 THR n 1 26 ASN n 1 27 ARG n 1 28 TRP n 1 29 LEU n 1 30 ALA n 1 31 GLU n 1 32 GLN n 1 33 MSE n 1 34 GLY n 1 35 LYS n 1 36 SER n 1 37 GLU n 1 38 ASN n 1 39 THR n 1 40 ILE n 1 41 SER n 1 42 ARG n 1 43 TRP n 1 44 CYS n 1 45 SER n 1 46 ASN n 1 47 LYS n 1 48 SER n 1 49 GLN n 1 50 PRO n 1 51 SER n 1 52 LEU n 1 53 ASP n 1 54 MSE n 1 55 LEU n 1 56 VAL n 1 57 LYS n 1 58 VAL n 1 59 ALA n 1 60 GLU n 1 61 LEU n 1 62 LEU n 1 63 ASN n 1 64 VAL n 1 65 ASP n 1 66 PRO n 1 67 ARG n 1 68 GLN n 1 69 LEU n 1 70 ILE n 1 71 ASN n 1 72 GLY n 1 73 LYS n 1 74 ILE n 1 75 LYS n 1 76 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacteroides _entity_src_gen.pdbx_gene_src_gene BF1076 _entity_src_gen.gene_src_species 'Bacteroides fragilis' _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 25285 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LGD2_BACFN _struct_ref.pdbx_db_accession Q5LGD2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MSNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIKI _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BS3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LGD2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 73 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 73 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3BS3 SER A 1 ? UNP Q5LGD2 ? ? 'EXPRESSION TAG' -2 1 1 3BS3 ASN A 2 ? UNP Q5LGD2 ? ? 'EXPRESSION TAG' -1 2 1 3BS3 ALA A 3 ? UNP Q5LGD2 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3BS3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl pH 8.5, 0.2M LiSO4, 1.25M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-11-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97931 1.0 2 0.97945 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97931, 0.97945' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3BS3 _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 50.00 _reflns.number_obs 9728 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_netI_over_sigmaI 9.200 _reflns.pdbx_chi_squared 2.071 _reflns.pdbx_redundancy 11.900 _reflns.percent_possible_obs 98.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 9728 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 26.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.69 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.509 _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.514 _reflns_shell.pdbx_redundancy 10.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 632 _reflns_shell.percent_possible_all 98.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BS3 _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 29.320 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.020 _refine.ls_number_reflns_obs 9714 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.219 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 463 _refine.B_iso_mean 32.059 _refine.aniso_B[1][1] -1.100 _refine.aniso_B[2][2] -1.100 _refine.aniso_B[3][3] 1.660 _refine.aniso_B[1][2] -0.550 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.099 _refine.overall_SU_ML 0.060 _refine.overall_SU_B 3.505 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 9714 _refine.ls_R_factor_all 0.185 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 502 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 594 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 29.320 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 600 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 820 1.346 1.990 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 85 4.079 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29 43.062 24.483 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 141 14.635 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 16.164 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 92 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 439 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 243 0.212 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 407 0.305 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 50 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 33 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 10 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 358 0.989 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 581 1.355 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 269 2.266 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 226 3.348 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.65 _refine_ls_shell.d_res_low 1.69 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.090 _refine_ls_shell.number_reflns_R_work 682 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 719 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BS3 _struct.title 'Crystal structure of a putative DNA-binding protein from Bacteroides fragilis' _struct.pdbx_descriptor 'Putative DNA-binding protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BS3 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;DNA-binding, XRE-family, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 14 ? LYS A 22 ? ARG A 11 LYS A 19 1 ? 9 HELX_P HELX_P2 2 THR A 25 ? GLY A 34 ? THR A 22 GLY A 31 1 ? 10 HELX_P HELX_P3 3 SER A 36 ? SER A 45 ? SER A 33 SER A 42 1 ? 10 HELX_P HELX_P4 4 SER A 51 ? ASN A 63 ? SER A 48 ASN A 60 1 ? 13 HELX_P HELX_P5 5 ASP A 65 ? GLN A 68 ? ASP A 62 GLN A 65 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 10 C ? ? ? 1_555 A MSE 11 N ? ? A MSE 7 A MSE 8 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 11 C ? ? ? 1_555 A LEU 12 N ? ? A MSE 8 A LEU 9 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A GLN 32 C ? ? ? 1_555 A MSE 33 N ? ? A GLN 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 33 C ? ? ? 1_555 A GLY 34 N ? ? A MSE 30 A GLY 31 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A ASP 53 C ? ? ? 1_555 A MSE 54 N ? ? A ASP 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 54 C ? ? ? 1_555 A LEU 55 N ? ? A MSE 51 A LEU 52 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 12 ? ASN A 13 ? LEU A 9 ASN A 10 A 2 ILE A 70 ? ASN A 71 ? ILE A 67 ASN A 68 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 12 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 9 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 71 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 101' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LYS A 35 ? LYS A 32 . ? 1_555 ? 2 AC1 4 SER A 36 ? SER A 33 . ? 1_555 ? 3 AC1 4 THR A 39 ? THR A 36 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 176 . ? 1_555 ? 5 AC2 2 ARG A 27 ? ARG A 24 . ? 6_664 ? 6 AC2 2 ARG A 67 ? ARG A 64 . ? 1_555 ? # _atom_sites.entry_id 3BS3 _atom_sites.fract_transf_matrix[1][1] 0.015789 _atom_sites.fract_transf_matrix[1][2] 0.009116 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018231 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028813 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 SER 5 2 ? ? ? A . n A 1 6 ASN 6 3 ? ? ? A . n A 1 7 ASN 7 4 ? ? ? A . n A 1 8 GLN 8 5 ? ? ? A . n A 1 9 GLN 9 6 ? ? ? A . n A 1 10 MSE 10 7 7 MSE MSE A . n A 1 11 MSE 11 8 8 MSE MSE A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 LYS 16 13 13 LYS LYS A . n A 1 17 VAL 17 14 14 VAL VAL A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ALA 20 17 17 ALA ALA A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 LYS 22 19 19 LYS LYS A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 ARG 24 21 21 ARG ARG A . n A 1 25 THR 25 22 22 THR THR A . n A 1 26 ASN 26 23 23 ASN ASN A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 TRP 28 25 25 TRP TRP A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 GLN 32 29 29 GLN GLN A . n A 1 33 MSE 33 30 30 MSE MSE A . n A 1 34 GLY 34 31 31 GLY GLY A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 SER 36 33 33 SER SER A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 THR 39 36 36 THR THR A . n A 1 40 ILE 40 37 37 ILE ILE A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 ARG 42 39 39 ARG ARG A . n A 1 43 TRP 43 40 40 TRP TRP A . n A 1 44 CYS 44 41 41 CYS CYS A . n A 1 45 SER 45 42 42 SER SER A . n A 1 46 ASN 46 43 43 ASN ASN A . n A 1 47 LYS 47 44 44 LYS LYS A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 GLN 49 46 46 GLN GLN A . n A 1 50 PRO 50 47 47 PRO PRO A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ASP 53 50 50 ASP ASP A . n A 1 54 MSE 54 51 51 MSE MSE A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 VAL 56 53 53 VAL VAL A . n A 1 57 LYS 57 54 54 LYS LYS A . n A 1 58 VAL 58 55 55 VAL VAL A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 GLU 60 57 57 GLU GLU A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 PRO 66 63 63 PRO PRO A . n A 1 67 ARG 67 64 64 ARG ARG A . n A 1 68 GLN 68 65 65 GLN GLN A . n A 1 69 LEU 69 66 66 LEU LEU A . n A 1 70 ILE 70 67 67 ILE ILE A . n A 1 71 ASN 71 68 68 ASN ASN A . n A 1 72 GLY 72 69 ? ? ? A . n A 1 73 LYS 73 70 ? ? ? A . n A 1 74 ILE 74 71 ? ? ? A . n A 1 75 LYS 75 72 ? ? ? A . n A 1 76 ILE 76 73 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 101 101 SO4 SO4 A . C 3 EDO 1 102 102 EDO EDO A . D 4 HOH 1 103 1 HOH HOH A . D 4 HOH 2 104 2 HOH HOH A . D 4 HOH 3 105 3 HOH HOH A . D 4 HOH 4 106 4 HOH HOH A . D 4 HOH 5 107 5 HOH HOH A . D 4 HOH 6 108 6 HOH HOH A . D 4 HOH 7 109 7 HOH HOH A . D 4 HOH 8 110 8 HOH HOH A . D 4 HOH 9 111 9 HOH HOH A . D 4 HOH 10 112 10 HOH HOH A . D 4 HOH 11 113 11 HOH HOH A . D 4 HOH 12 114 12 HOH HOH A . D 4 HOH 13 115 13 HOH HOH A . D 4 HOH 14 116 14 HOH HOH A . D 4 HOH 15 117 15 HOH HOH A . D 4 HOH 16 118 16 HOH HOH A . D 4 HOH 17 119 17 HOH HOH A . D 4 HOH 18 120 18 HOH HOH A . D 4 HOH 19 121 19 HOH HOH A . D 4 HOH 20 122 20 HOH HOH A . D 4 HOH 21 123 21 HOH HOH A . D 4 HOH 22 124 22 HOH HOH A . D 4 HOH 23 125 23 HOH HOH A . D 4 HOH 24 126 24 HOH HOH A . D 4 HOH 25 127 25 HOH HOH A . D 4 HOH 26 128 26 HOH HOH A . D 4 HOH 27 129 27 HOH HOH A . D 4 HOH 28 130 28 HOH HOH A . D 4 HOH 29 131 29 HOH HOH A . D 4 HOH 30 132 30 HOH HOH A . D 4 HOH 31 133 31 HOH HOH A . D 4 HOH 32 134 32 HOH HOH A . D 4 HOH 33 135 33 HOH HOH A . D 4 HOH 34 136 34 HOH HOH A . D 4 HOH 35 137 35 HOH HOH A . D 4 HOH 36 138 36 HOH HOH A . D 4 HOH 37 139 37 HOH HOH A . D 4 HOH 38 140 38 HOH HOH A . D 4 HOH 39 141 39 HOH HOH A . D 4 HOH 40 142 40 HOH HOH A . D 4 HOH 41 143 41 HOH HOH A . D 4 HOH 42 144 42 HOH HOH A . D 4 HOH 43 145 43 HOH HOH A . D 4 HOH 44 146 44 HOH HOH A . D 4 HOH 45 147 45 HOH HOH A . D 4 HOH 46 148 46 HOH HOH A . D 4 HOH 47 149 47 HOH HOH A . D 4 HOH 48 150 48 HOH HOH A . D 4 HOH 49 151 49 HOH HOH A . D 4 HOH 50 152 50 HOH HOH A . D 4 HOH 51 153 51 HOH HOH A . D 4 HOH 52 154 52 HOH HOH A . D 4 HOH 53 155 53 HOH HOH A . D 4 HOH 54 156 54 HOH HOH A . D 4 HOH 55 157 55 HOH HOH A . D 4 HOH 56 158 56 HOH HOH A . D 4 HOH 57 159 57 HOH HOH A . D 4 HOH 58 160 58 HOH HOH A . D 4 HOH 59 161 59 HOH HOH A . D 4 HOH 60 162 60 HOH HOH A . D 4 HOH 61 163 61 HOH HOH A . D 4 HOH 62 164 62 HOH HOH A . D 4 HOH 63 165 63 HOH HOH A . D 4 HOH 64 166 64 HOH HOH A . D 4 HOH 65 167 65 HOH HOH A . D 4 HOH 66 168 66 HOH HOH A . D 4 HOH 67 169 67 HOH HOH A . D 4 HOH 68 170 68 HOH HOH A . D 4 HOH 69 171 69 HOH HOH A . D 4 HOH 70 172 70 HOH HOH A . D 4 HOH 71 173 71 HOH HOH A . D 4 HOH 72 174 72 HOH HOH A . D 4 HOH 73 175 73 HOH HOH A . D 4 HOH 74 176 74 HOH HOH A . D 4 HOH 75 177 75 HOH HOH A . D 4 HOH 76 178 76 HOH HOH A . D 4 HOH 77 179 77 HOH HOH A . D 4 HOH 78 180 78 HOH HOH A . D 4 HOH 79 181 79 HOH HOH A . D 4 HOH 80 182 80 HOH HOH A . D 4 HOH 81 183 81 HOH HOH A . D 4 HOH 82 184 82 HOH HOH A . D 4 HOH 83 185 83 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 10 A MSE 7 ? MET SELENOMETHIONINE 2 A MSE 11 A MSE 8 ? MET SELENOMETHIONINE 3 A MSE 33 A MSE 30 ? MET SELENOMETHIONINE 4 A MSE 54 A MSE 51 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1120 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 109.7029019990 0.0000000000 0.0000000000 -1.0000000000 -11.5686666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 137 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.650 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 9728 _diffrn_reflns.pdbx_Rmerge_I_obs 0.094 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.07 _diffrn_reflns.av_sigmaI_over_netI 9.20 _diffrn_reflns.pdbx_redundancy 11.90 _diffrn_reflns.pdbx_percent_possible_obs 98.00 _diffrn_reflns.number 115860 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.07 50.00 ? ? 0.078 ? 6.447 11.70 92.80 1 3.23 4.07 ? ? 0.075 ? 4.041 12.00 96.50 1 2.82 3.23 ? ? 0.095 ? 4.130 12.30 96.10 1 2.56 2.82 ? ? 0.101 ? 3.009 12.20 98.00 1 2.38 2.56 ? ? 0.098 ? 2.262 12.20 98.00 1 2.24 2.38 ? ? 0.109 ? 2.022 12.30 98.20 1 2.13 2.24 ? ? 0.129 ? 1.784 12.30 98.30 1 2.03 2.13 ? ? 0.143 ? 1.387 12.30 99.10 1 1.96 2.03 ? ? 0.171 ? 1.184 12.10 99.40 1 1.89 1.96 ? ? 0.225 ? 0.915 12.30 98.60 1 1.83 1.89 ? ? 0.274 ? 0.789 12.20 100.00 1 1.78 1.83 ? ? 0.349 ? 0.830 11.90 98.80 1 1.73 1.78 ? ? 0.396 ? 0.663 11.80 98.90 1 1.69 1.73 ? ? 0.475 ? 0.592 11.00 99.80 1 1.65 1.69 ? ? 0.509 ? 0.514 10.00 98.00 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.1757 _pdbx_refine_tls.origin_y 43.7762 _pdbx_refine_tls.origin_z -7.2521 _pdbx_refine_tls.T[1][1] -0.1121 _pdbx_refine_tls.T[2][2] -0.1013 _pdbx_refine_tls.T[3][3] -0.1090 _pdbx_refine_tls.T[1][2] 0.0160 _pdbx_refine_tls.T[1][3] -0.0072 _pdbx_refine_tls.T[2][3] 0.0006 _pdbx_refine_tls.L[1][1] 2.6955 _pdbx_refine_tls.L[2][2] 5.0508 _pdbx_refine_tls.L[3][3] 2.1305 _pdbx_refine_tls.L[1][2] 0.6023 _pdbx_refine_tls.L[1][3] -0.1516 _pdbx_refine_tls.L[2][3] 1.1381 _pdbx_refine_tls.S[1][1] -0.0418 _pdbx_refine_tls.S[2][2] 0.1450 _pdbx_refine_tls.S[3][3] -0.1032 _pdbx_refine_tls.S[1][2] -0.0456 _pdbx_refine_tls.S[1][3] 0.0341 _pdbx_refine_tls.S[2][3] -0.2005 _pdbx_refine_tls.S[2][1] 0.1772 _pdbx_refine_tls.S[3][1] -0.0202 _pdbx_refine_tls.S[3][2] 0.0953 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 7 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 68 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 10 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 71 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 1.65 50.00 8755 0.100 0.000 1.440 960 0.100 0.000 1.000 2 1.65 50.00 8736 2.300 0.950 0.860 951 3.600 0.730 0.810 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 10.72 50.00 20 0.500 0.000 0.900 16 0.400 0.000 1.000 1 6.01 10.72 132 0.500 0.000 1.450 44 0.400 0.000 1.000 1 4.17 6.01 337 0.400 0.000 1.090 75 0.400 0.000 1.000 1 3.19 4.17 647 0.300 0.000 1.010 100 0.300 0.000 1.000 1 2.59 3.19 1027 0.200 0.000 1.320 135 0.100 0.000 1.000 1 2.18 2.59 1566 0.100 0.000 1.600 162 0.100 0.000 1.000 1 1.88 2.18 2171 0.100 0.000 2.160 203 0.000 0.000 1.000 1 1.65 1.88 2855 0.000 0.000 9.910 225 0.000 0.000 1.000 2 10.72 50.00 12 4.500 3.210 0.470 11 6.800 1.880 0.700 2 6.01 10.72 124 5.200 1.970 0.680 42 6.700 1.340 0.710 2 4.17 6.01 336 4.600 1.670 0.740 74 5.900 1.170 0.740 2 3.19 4.17 647 4.300 1.250 0.820 100 5.800 0.840 0.720 2 2.59 3.19 1027 2.900 1.210 0.820 135 3.500 0.820 0.770 2 2.18 2.59 1566 2.100 1.040 0.820 162 3.300 0.570 0.810 2 1.88 2.18 2171 1.900 0.640 0.920 203 2.700 0.340 0.940 2 1.65 1.88 2853 1.700 0.410 0.990 224 2.400 0.220 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se 0.810 0.175 0.038 24.83940 0.000 2 Se 0.796 0.075 -0.083 22.10381 0.000 3 Se 0.583 0.015 -0.059 49.32137 0.000 4 Se 0.803 0.093 0.013 19.15700 0.000 5 Se 0.517 -0.175 0.162 130.88120 0.000 6 Se 0.810 0.175 0.039 25.84744 -0.132 7 Se 0.796 0.075 -0.083 25.15341 -0.083 8 Se 0.584 0.015 -0.059 56.66603 -0.077 9 Se 0.803 0.092 0.011 20.08065 -0.029 10 Se 0.519 -0.173 0.164 132.87267 -0.042 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 10.72 50.00 36 0.597 16 0.384 20 0.767 6.01 10.72 176 0.711 44 0.540 132 0.768 4.17 6.01 412 0.695 75 0.525 337 0.733 3.19 4.17 747 0.692 100 0.484 647 0.724 2.59 3.19 1162 0.681 135 0.402 1027 0.717 2.18 2.59 1728 0.628 162 0.376 1566 0.654 1.88 2.18 2374 0.442 203 0.168 2171 0.468 1.65 1.88 3080 0.234 225 0.068 2855 0.247 # _pdbx_phasing_dm.entry_id 3BS3 _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 9715 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 4.470 100.000 40.600 ? ? ? 0.879 ? ? 506 3.540 4.470 42.300 ? ? ? 0.941 ? ? 508 3.080 3.540 43.300 ? ? ? 0.928 ? ? 503 2.800 3.080 45.000 ? ? ? 0.918 ? ? 508 2.590 2.800 45.000 ? ? ? 0.925 ? ? 503 2.440 2.590 41.400 ? ? ? 0.927 ? ? 512 2.310 2.440 42.700 ? ? ? 0.929 ? ? 515 2.210 2.310 44.700 ? ? ? 0.925 ? ? 504 2.130 2.210 46.300 ? ? ? 0.920 ? ? 509 2.050 2.130 46.600 ? ? ? 0.913 ? ? 507 1.990 2.050 54.500 ? ? ? 0.904 ? ? 512 1.930 1.990 56.800 ? ? ? 0.914 ? ? 506 1.880 1.930 58.000 ? ? ? 0.901 ? ? 512 1.830 1.880 58.400 ? ? ? 0.912 ? ? 506 1.790 1.830 66.800 ? ? ? 0.888 ? ? 503 1.750 1.790 64.100 ? ? ? 0.900 ? ? 516 1.720 1.750 68.100 ? ? ? 0.894 ? ? 504 1.690 1.720 68.400 ? ? ? 0.873 ? ? 510 1.650 1.690 71.200 ? ? ? 0.841 ? ? 571 # _phasing.method MAD # _phasing_MAD.entry_id 3BS3 _phasing_MAD.pdbx_d_res_high 1.65 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 9715 _phasing_MAD.pdbx_fom 0.473 _phasing_MAD.pdbx_reflns_centric 960 _phasing_MAD.pdbx_fom_centric 0.294 _phasing_MAD.pdbx_reflns_acentric 8755 _phasing_MAD.pdbx_fom_acentric 0.493 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? 18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A SER 2 ? A SER 5 6 1 Y 1 A ASN 3 ? A ASN 6 7 1 Y 1 A ASN 4 ? A ASN 7 8 1 Y 1 A GLN 5 ? A GLN 8 9 1 Y 1 A GLN 6 ? A GLN 9 10 1 Y 1 A GLY 69 ? A GLY 72 11 1 Y 1 A LYS 70 ? A LYS 73 12 1 Y 1 A ILE 71 ? A ILE 74 13 1 Y 1 A LYS 72 ? A LYS 75 14 1 Y 1 A ILE 73 ? A ILE 76 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 1,2-ETHANEDIOL EDO 4 water HOH #