HEADER TRANSFERASE 26-DEC-07 3BSY TITLE PGLD FROM CAMPYLOBACTER JEJUNI, NCTC 11168, IN COMPLEX WITH ACETYL TITLE 2 COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.7.7.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 STRAIN: NCTC 11168; SOURCE 4 GENE: PGLD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETGQ KEYWDS LEFT-HAND BETA HELIX, HEXAPEPTIDE REPEAT, UDP, ACETYL COENZYME A, KEYWDS 2 ROSSMANN FOLD, BACILLOSAMINE, CAMPYLOBACTER JEJUNI, PGL, N-LINKED KEYWDS 3 GLYCOSYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.B.OLIVIER,B.IMPERIALI REVDAT 6 30-AUG-23 3BSY 1 REMARK SEQADV REVDAT 5 25-OCT-17 3BSY 1 REMARK REVDAT 4 12-NOV-14 3BSY 1 KEYWDS REVDAT 3 16-MAR-10 3BSY 1 JRNL REVDAT 2 24-FEB-09 3BSY 1 VERSN REVDAT 1 29-JUL-08 3BSY 0 JRNL AUTH N.B.OLIVIER,B.IMPERIALI JRNL TITL CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF PGLD FROM JRNL TITL 2 CAMPYLOBACTER JEJUNI. JRNL REF J.BIOL.CHEM. V. 283 27937 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18667421 JRNL DOI 10.1074/JBC.M801207200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3996 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 153 REMARK 3 SOLVENT ATOMS : 627 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4456 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6064 ; 1.620 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 584 ; 6.196 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;38.872 ;25.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;11.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 4.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.218 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3261 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2315 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3095 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 499 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2874 ; 0.596 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4570 ; 1.116 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 1.989 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1491 ; 3.218 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60024 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 32.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM 6.0 REMARK 200 STARTING MODEL: CITRATE-BOUND MODEL WITH CITRATE REMOVED (3BSW) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M AMMONIUM SULFATE, 100 MM REMARK 280 CACODYLATE, PH 6.5 IN THE RESEVIOR; PROTEIN SOLUTION CONTAINING REMARK 280 20 MM HEPES, 150 MM NACL, PH 7.1, PROTEIN CONCENTRATION OF 10 MG/ REMARK 280 ML, ACETYL COENZYME A AT 5 MM; DROP MADE BY MIXING 1.5 UL OF REMARK 280 PROTEIN AND RESEVOIR SOLUTIONS, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.93550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.59750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.93100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.59750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.93550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.93100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 5 CB CG CD OE1 OE2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 HIS A 15 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 38 CB CG CD CE NZ REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 SER A 44 CB OG REMARK 470 LYS A 48 CB CG CD CE NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 ASN A 71 CG OD1 ND2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 LEU B 17 CG CD1 CD2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLN B 66 CG CD OE1 NE2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 ARG C 3 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 5 CG CD OE1 OE2 REMARK 470 LYS C 24 CG CD CE NZ REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 GLU C 59 CG CD OE1 OE2 REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 GLU C 93 CG CD OE1 OE2 REMARK 470 LYS C 110 CG CD CE NZ REMARK 470 LYS C 179 CG CD CE NZ REMARK 470 GLU C 183 CG CD OE1 OE2 REMARK 470 LYS C 193 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 58.31 -93.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NPO RELATED DB: PDB REMARK 900 STRUCTURAL GENOMICS REMARK 900 RELATED ID: 3BSS RELATED DB: PDB REMARK 900 PGLD IN COMPLEX WITH NATIVE SUBSTRATE UDP-4-AMINO-SUGAR REMARK 900 RELATED ID: 3BSW RELATED DB: PDB REMARK 900 PGLD IN COMPLEX WITH CITRATE DBREF 3BSY A 1 195 UNP Q0P9D1 Q0P9D1_CAMJE 1 195 DBREF 3BSY B 1 195 UNP Q0P9D1 Q0P9D1_CAMJE 1 195 DBREF 3BSY C 1 195 UNP Q0P9D1 Q0P9D1_CAMJE 1 195 SEQADV 3BSY GLY A -2 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY SER A -1 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY ALA A 0 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY GLY B -2 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY SER B -1 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY ALA B 0 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY GLY C -2 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY SER C -1 UNP Q0P9D1 EXPRESSION TAG SEQADV 3BSY ALA C 0 UNP Q0P9D1 EXPRESSION TAG SEQRES 1 A 198 GLY SER ALA MET ALA ARG THR GLU LYS ILE TYR ILE TYR SEQRES 2 A 198 GLY ALA SER GLY HIS GLY LEU VAL CYS GLU ASP VAL ALA SEQRES 3 A 198 LYS ASN MET GLY TYR LYS GLU CYS ILE PHE LEU ASP ASP SEQRES 4 A 198 PHE LYS GLY MET LYS PHE GLU SER THR LEU PRO LYS TYR SEQRES 5 A 198 ASP PHE PHE ILE ALA ILE GLY ASN ASN GLU ILE ARG LYS SEQRES 6 A 198 LYS ILE TYR GLN LYS ILE SER GLU ASN GLY PHE LYS ILE SEQRES 7 A 198 VAL ASN LEU ILE HIS LYS SER ALA LEU ILE SER PRO SER SEQRES 8 A 198 ALA ILE VAL GLU GLU ASN ALA GLY ILE LEU ILE MET PRO SEQRES 9 A 198 TYR VAL VAL ILE ASN ALA LYS ALA LYS ILE GLU LYS GLY SEQRES 10 A 198 VAL ILE LEU ASN THR SER SER VAL ILE GLU HIS GLU CYS SEQRES 11 A 198 VAL ILE GLY GLU PHE SER HIS VAL SER VAL GLY ALA LYS SEQRES 12 A 198 CYS ALA GLY ASN VAL LYS ILE GLY LYS ASN CYS PHE LEU SEQRES 13 A 198 GLY ILE ASN SER CYS VAL LEU PRO ASN LEU SER LEU ALA SEQRES 14 A 198 ASP ASP SER ILE LEU GLY GLY GLY ALA THR LEU VAL LYS SEQRES 15 A 198 ASN GLN ASP GLU LYS GLY VAL PHE VAL GLY VAL PRO ALA SEQRES 16 A 198 LYS ARG MET SEQRES 1 B 198 GLY SER ALA MET ALA ARG THR GLU LYS ILE TYR ILE TYR SEQRES 2 B 198 GLY ALA SER GLY HIS GLY LEU VAL CYS GLU ASP VAL ALA SEQRES 3 B 198 LYS ASN MET GLY TYR LYS GLU CYS ILE PHE LEU ASP ASP SEQRES 4 B 198 PHE LYS GLY MET LYS PHE GLU SER THR LEU PRO LYS TYR SEQRES 5 B 198 ASP PHE PHE ILE ALA ILE GLY ASN ASN GLU ILE ARG LYS SEQRES 6 B 198 LYS ILE TYR GLN LYS ILE SER GLU ASN GLY PHE LYS ILE SEQRES 7 B 198 VAL ASN LEU ILE HIS LYS SER ALA LEU ILE SER PRO SER SEQRES 8 B 198 ALA ILE VAL GLU GLU ASN ALA GLY ILE LEU ILE MET PRO SEQRES 9 B 198 TYR VAL VAL ILE ASN ALA LYS ALA LYS ILE GLU LYS GLY SEQRES 10 B 198 VAL ILE LEU ASN THR SER SER VAL ILE GLU HIS GLU CYS SEQRES 11 B 198 VAL ILE GLY GLU PHE SER HIS VAL SER VAL GLY ALA LYS SEQRES 12 B 198 CYS ALA GLY ASN VAL LYS ILE GLY LYS ASN CYS PHE LEU SEQRES 13 B 198 GLY ILE ASN SER CYS VAL LEU PRO ASN LEU SER LEU ALA SEQRES 14 B 198 ASP ASP SER ILE LEU GLY GLY GLY ALA THR LEU VAL LYS SEQRES 15 B 198 ASN GLN ASP GLU LYS GLY VAL PHE VAL GLY VAL PRO ALA SEQRES 16 B 198 LYS ARG MET SEQRES 1 C 198 GLY SER ALA MET ALA ARG THR GLU LYS ILE TYR ILE TYR SEQRES 2 C 198 GLY ALA SER GLY HIS GLY LEU VAL CYS GLU ASP VAL ALA SEQRES 3 C 198 LYS ASN MET GLY TYR LYS GLU CYS ILE PHE LEU ASP ASP SEQRES 4 C 198 PHE LYS GLY MET LYS PHE GLU SER THR LEU PRO LYS TYR SEQRES 5 C 198 ASP PHE PHE ILE ALA ILE GLY ASN ASN GLU ILE ARG LYS SEQRES 6 C 198 LYS ILE TYR GLN LYS ILE SER GLU ASN GLY PHE LYS ILE SEQRES 7 C 198 VAL ASN LEU ILE HIS LYS SER ALA LEU ILE SER PRO SER SEQRES 8 C 198 ALA ILE VAL GLU GLU ASN ALA GLY ILE LEU ILE MET PRO SEQRES 9 C 198 TYR VAL VAL ILE ASN ALA LYS ALA LYS ILE GLU LYS GLY SEQRES 10 C 198 VAL ILE LEU ASN THR SER SER VAL ILE GLU HIS GLU CYS SEQRES 11 C 198 VAL ILE GLY GLU PHE SER HIS VAL SER VAL GLY ALA LYS SEQRES 12 C 198 CYS ALA GLY ASN VAL LYS ILE GLY LYS ASN CYS PHE LEU SEQRES 13 C 198 GLY ILE ASN SER CYS VAL LEU PRO ASN LEU SER LEU ALA SEQRES 14 C 198 ASP ASP SER ILE LEU GLY GLY GLY ALA THR LEU VAL LYS SEQRES 15 C 198 ASN GLN ASP GLU LYS GLY VAL PHE VAL GLY VAL PRO ALA SEQRES 16 C 198 LYS ARG MET HET ACO A 401 51 HET ACO B 403 51 HET ACO C 402 51 HETNAM ACO ACETYL COENZYME *A FORMUL 4 ACO 3(C23 H38 N7 O17 P3 S) FORMUL 7 HOH *627(H2 O) HELIX 1 1 SER A 13 GLY A 27 1 15 HELIX 2 2 ASN A 57 ASN A 71 1 15 HELIX 3 3 SER B 13 MET B 26 1 14 HELIX 4 4 ASN B 57 ASN B 71 1 15 HELIX 5 5 SER C 13 GLY C 27 1 15 HELIX 6 6 ASN C 57 ASN C 71 1 15 SHEET 1 A 3 GLU A 30 LEU A 34 0 SHEET 2 A 3 LYS A 6 TYR A 10 1 N ILE A 7 O ILE A 32 SHEET 3 A 3 ASP A 50 ILE A 53 1 O PHE A 52 N TYR A 10 SHEET 1 B 8 LEU A 78 ILE A 79 0 SHEET 2 B 8 LEU A 98 ILE A 99 1 O ILE A 99 N LEU A 78 SHEET 3 B 8 ILE A 116 LEU A 117 1 O LEU A 117 N LEU A 98 SHEET 4 B 8 HIS A 134 VAL A 135 1 O VAL A 135 N ILE A 116 SHEET 5 B 8 PHE A 152 LEU A 153 1 O LEU A 153 N HIS A 134 SHEET 6 B 8 ILE A 170 LEU A 171 1 O LEU A 171 N PHE A 152 SHEET 7 B 8 VAL A 186 VAL A 188 1 O PHE A 187 N ILE A 170 SHEET 8 B 8 LYS A 193 ARG A 194 -1 O LYS A 193 N VAL A 188 SHEET 1 C 6 LEU A 84 ILE A 85 0 SHEET 2 C 6 VAL A 104 ILE A 105 1 O ILE A 105 N LEU A 84 SHEET 3 C 6 VAL A 122 ILE A 123 1 O ILE A 123 N VAL A 104 SHEET 4 C 6 LYS A 140 CYS A 141 1 O CYS A 141 N VAL A 122 SHEET 5 C 6 CYS A 158 VAL A 159 1 O VAL A 159 N LYS A 140 SHEET 6 C 6 THR A 176 LEU A 177 1 O LEU A 177 N CYS A 158 SHEET 1 D 5 ILE A 90 VAL A 91 0 SHEET 2 D 5 LYS A 110 ILE A 111 1 O ILE A 111 N ILE A 90 SHEET 3 D 5 VAL A 128 ILE A 129 1 O ILE A 129 N LYS A 110 SHEET 4 D 5 LYS A 146 ILE A 147 1 O ILE A 147 N VAL A 128 SHEET 5 D 5 SER A 164 LEU A 165 1 O LEU A 165 N LYS A 146 SHEET 1 E 3 GLU B 30 LEU B 34 0 SHEET 2 E 3 LYS B 6 TYR B 10 1 N ILE B 7 O ILE B 32 SHEET 3 E 3 ASP B 50 ILE B 53 1 O PHE B 52 N TYR B 10 SHEET 1 F 8 LEU B 78 ILE B 79 0 SHEET 2 F 8 LEU B 98 ILE B 99 1 O ILE B 99 N LEU B 78 SHEET 3 F 8 ILE B 116 LEU B 117 1 O LEU B 117 N LEU B 98 SHEET 4 F 8 HIS B 134 VAL B 135 1 O VAL B 135 N ILE B 116 SHEET 5 F 8 PHE B 152 LEU B 153 1 O LEU B 153 N HIS B 134 SHEET 6 F 8 ILE B 170 LEU B 171 1 O LEU B 171 N PHE B 152 SHEET 7 F 8 VAL B 186 VAL B 188 1 O PHE B 187 N ILE B 170 SHEET 8 F 8 LYS B 193 ARG B 194 -1 O LYS B 193 N VAL B 188 SHEET 1 G 6 LEU B 84 ILE B 85 0 SHEET 2 G 6 VAL B 104 ILE B 105 1 O ILE B 105 N LEU B 84 SHEET 3 G 6 VAL B 122 ILE B 123 1 O ILE B 123 N VAL B 104 SHEET 4 G 6 LYS B 140 CYS B 141 1 O CYS B 141 N VAL B 122 SHEET 5 G 6 CYS B 158 VAL B 159 1 O VAL B 159 N LYS B 140 SHEET 6 G 6 THR B 176 LEU B 177 1 O LEU B 177 N CYS B 158 SHEET 1 H 5 ILE B 90 VAL B 91 0 SHEET 2 H 5 LYS B 110 ILE B 111 1 O ILE B 111 N ILE B 90 SHEET 3 H 5 VAL B 128 ILE B 129 1 O ILE B 129 N LYS B 110 SHEET 4 H 5 LYS B 146 ILE B 147 1 O ILE B 147 N VAL B 128 SHEET 5 H 5 SER B 164 LEU B 165 1 O LEU B 165 N LYS B 146 SHEET 1 I 3 GLU C 30 LEU C 34 0 SHEET 2 I 3 LYS C 6 TYR C 10 1 N ILE C 7 O ILE C 32 SHEET 3 I 3 ASP C 50 ILE C 53 1 O PHE C 52 N TYR C 10 SHEET 1 J 8 LEU C 78 ILE C 79 0 SHEET 2 J 8 LEU C 98 ILE C 99 1 O ILE C 99 N LEU C 78 SHEET 3 J 8 ILE C 116 LEU C 117 1 O LEU C 117 N LEU C 98 SHEET 4 J 8 HIS C 134 VAL C 135 1 O VAL C 135 N ILE C 116 SHEET 5 J 8 PHE C 152 LEU C 153 1 O LEU C 153 N HIS C 134 SHEET 6 J 8 ILE C 170 LEU C 171 1 O LEU C 171 N PHE C 152 SHEET 7 J 8 VAL C 186 VAL C 188 1 O PHE C 187 N ILE C 170 SHEET 8 J 8 LYS C 193 ARG C 194 -1 O LYS C 193 N VAL C 188 SHEET 1 K 6 LEU C 84 ILE C 85 0 SHEET 2 K 6 VAL C 104 ILE C 105 1 O ILE C 105 N LEU C 84 SHEET 3 K 6 VAL C 122 ILE C 123 1 O ILE C 123 N VAL C 104 SHEET 4 K 6 LYS C 140 CYS C 141 1 O CYS C 141 N VAL C 122 SHEET 5 K 6 CYS C 158 VAL C 159 1 O VAL C 159 N LYS C 140 SHEET 6 K 6 THR C 176 LEU C 177 1 O LEU C 177 N CYS C 158 SHEET 1 L 5 ILE C 90 VAL C 91 0 SHEET 2 L 5 LYS C 110 ILE C 111 1 O ILE C 111 N ILE C 90 SHEET 3 L 5 VAL C 128 ILE C 129 1 O ILE C 129 N LYS C 110 SHEET 4 L 5 LYS C 146 ILE C 147 1 O ILE C 147 N VAL C 128 SHEET 5 L 5 SER C 164 LEU C 165 1 O LEU C 165 N LYS C 146 CISPEP 1 VAL A 190 PRO A 191 0 1.66 CISPEP 2 VAL B 190 PRO B 191 0 3.13 CISPEP 3 VAL C 190 PRO C 191 0 4.23 SITE 1 AC1 19 ASN A 118 HIS A 134 SER A 136 PHE A 152 SITE 2 AC1 19 GLY A 154 ILE A 155 GLY A 172 GLY A 173 SITE 3 AC1 19 MET A 195 HOH A 404 HOH A 443 HOH A 477 SITE 4 AC1 19 HOH A 499 HOH A 512 HOH A 569 ALA C 142 SITE 5 AC1 19 LEU C 160 PRO C 191 HOH C 466 SITE 1 AC2 18 ALA B 142 LEU B 160 PRO B 191 HOH B 562 SITE 2 AC2 18 ASN C 118 HIS C 134 SER C 136 PHE C 152 SITE 3 AC2 18 GLY C 154 ILE C 155 GLY C 172 GLY C 173 SITE 4 AC2 18 HOH C 416 HOH C 461 HOH C 470 HOH C 529 SITE 5 AC2 18 HOH C 544 HOH C 545 SITE 1 AC3 20 ALA A 142 LEU A 160 PRO A 191 HOH A 409 SITE 2 AC3 20 ASN B 118 HIS B 134 SER B 136 PHE B 152 SITE 3 AC3 20 GLY B 154 ILE B 155 GLY B 172 GLY B 173 SITE 4 AC3 20 MET B 195 HOH B 416 HOH B 445 HOH B 491 SITE 5 AC3 20 HOH B 513 HOH B 535 HOH B 577 HOH B 586 CRYST1 55.871 91.862 125.195 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007988 0.00000