HEADER DNA BINDING PROTEIN, CHAPERONE 30-DEC-07 3BTP TITLE CRYSTAL STRUCTURE OF AGROBACTERIUM TUMEFACIENS VIRE2 IN COMPLEX WITH TITLE 2 ITS CHAPERONE VIRE1: A NOVEL FOLD AND IMPLICATIONS FOR DNA BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRAND DNA-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 63.5 KDA VIRULENCE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN VIRE1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: 7.1 KDA VIRULENCE PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 STRAIN: C58; SOURCE 4 ATCC: 33970; SOURCE 5 GENE: VIRE2, ATU6190, AGR_PTI_28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACYCDUET-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 12 STRAIN: C58; SOURCE 13 ATCC: 33970; SOURCE 14 GENE: VIRE1, ATU6189, AGR_PTI_26; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PACYCDUET-1 KEYWDS TIM BARREL, UNIQUE TOPOLOGY, NOVEL FOLD, STRUCTURAL GENOMICS, ISRAEL KEYWDS 2 STRUCTURAL PROTEOMICS CENTER, ISPC, CROWN GALL TUMOR, DNA-BINDING, KEYWDS 3 SECRETED, VIRULENCE, DNA BINDING PROTEIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,S.ALBECK,T.UNGER,M.ELBAUM,ISRAEL STRUCTURAL PROTEOMICS CENTER AUTHOR 2 (ISPC) REVDAT 5 21-FEB-24 3BTP 1 REMARK SEQADV REVDAT 4 13-JUL-11 3BTP 1 VERSN REVDAT 3 24-FEB-09 3BTP 1 VERSN REVDAT 2 26-AUG-08 3BTP 1 JRNL REVDAT 1 19-AUG-08 3BTP 0 JRNL AUTH O.DYM,S.ALBECK,T.UNGER,J.JACOBOVITCH,A.BRANZBURG,Y.MICHAEL, JRNL AUTH 2 D.FRENKIEL-KRISPIN,S.G.WOLF,M.ELBAUM JRNL TITL CRYSTAL STRUCTURE OF THE AGROBACTERIUM VIRULENCE COMPLEX JRNL TITL 2 VIRE1-VIRE2 REVEALS A FLEXIBLE PROTEIN THAT CAN ACCOMMODATE JRNL TITL 3 DIFFERENT PARTNERS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 11170 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18678909 JRNL DOI 10.1073/PNAS.0801525105 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3462 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4663 ; 2.260 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 8.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;33.973 ;23.777 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;18.404 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.046 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2678 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1424 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2267 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.076 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2150 ; 1.450 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3322 ; 2.251 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 3.440 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1340 ; 5.266 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900, 0.98000, 0.97600 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR AND TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.2M NH4CL, 1% TRITON X REMARK 280 -405, PH 7.0, MICROBATCH UNDER OIL, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.51000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.24150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.13550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.24150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.51000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.13550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 ILE A 12 REMARK 465 THR A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ASN A 19 REMARK 465 VAL A 20 REMARK 465 GLU A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 ASP A 24 REMARK 465 PHE A 25 REMARK 465 VAL A 26 REMARK 465 ASN A 27 REMARK 465 LEU A 28 REMARK 465 LYS A 29 REMARK 465 ARG A 30 REMARK 465 GLN A 31 REMARK 465 LYS A 32 REMARK 465 ARG A 33 REMARK 465 GLU A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 ASN A 37 REMARK 465 SER A 38 REMARK 465 THR A 39 REMARK 465 GLY A 40 REMARK 465 MET A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 ILE A 44 REMARK 465 ASP A 45 REMARK 465 MET A 46 REMARK 465 THR A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 GLN A 50 REMARK 465 GLU A 51 REMARK 465 THR A 52 REMARK 465 PRO A 53 REMARK 465 GLU A 54 REMARK 465 HIS A 55 REMARK 465 ASN A 56 REMARK 465 MET A 57 REMARK 465 HIS A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 PRO A 61 REMARK 465 THR A 62 REMARK 465 HIS A 63 REMARK 465 THR A 64 REMARK 465 ASP A 65 REMARK 465 ASP A 66 REMARK 465 LEU A 67 REMARK 465 GLY A 68 REMARK 465 PRO A 69 REMARK 465 ARG A 70 REMARK 465 LEU A 71 REMARK 465 ASP A 72 REMARK 465 ALA A 73 REMARK 465 ASP A 74 REMARK 465 MET A 75 REMARK 465 LEU A 76 REMARK 465 ASP A 77 REMARK 465 SER A 78 REMARK 465 GLN A 79 REMARK 465 SER A 80 REMARK 465 SER A 81 REMARK 465 HIS A 82 REMARK 465 VAL A 83 REMARK 465 SER A 84 REMARK 465 SER A 85 REMARK 465 SER A 86 REMARK 465 ALA A 87 REMARK 465 GLN A 88 REMARK 465 GLY A 89 REMARK 465 ASN A 90 REMARK 465 ARG A 91 REMARK 465 SER A 92 REMARK 465 GLU A 93 REMARK 465 VAL A 94 REMARK 465 GLU A 95 REMARK 465 ASN A 96 REMARK 465 GLU A 97 REMARK 465 LEU A 98 REMARK 465 SER A 99 REMARK 465 ASN A 100 REMARK 465 LEU A 101 REMARK 465 PHE A 102 REMARK 465 ALA A 103 REMARK 465 LYS A 104 REMARK 465 MET A 105 REMARK 465 ALA A 106 REMARK 465 LEU A 107 REMARK 465 PRO A 108 REMARK 465 GLY A 109 REMARK 465 HIS A 110 REMARK 465 ASP A 111 REMARK 465 HIS A 180 REMARK 465 ASN A 181 REMARK 465 HIS A 342 REMARK 465 ASN A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 358 REMARK 465 GLY A 359 REMARK 465 GLN A 360 REMARK 465 GLY A 361 REMARK 465 GLY A 362 REMARK 465 ASN A 440 REMARK 465 SER A 441 REMARK 465 VAL A 442 REMARK 465 LYS A 443 REMARK 465 PHE A 444 REMARK 465 GLU A 445 REMARK 465 GLN A 446 REMARK 465 GLN A 473 REMARK 465 GLN A 474 REMARK 465 LEU A 475 REMARK 465 GLU A 518 REMARK 465 PRO A 519 REMARK 465 SER A 520 REMARK 465 ASP A 521 REMARK 465 ARG A 522 REMARK 465 TYR A 523 REMARK 465 SER A 524 REMARK 465 ARG A 525 REMARK 465 ALA A 526 REMARK 465 PHE A 527 REMARK 465 VAL A 528 REMARK 465 ARG A 529 REMARK 465 PRO A 530 REMARK 465 GLU A 531 REMARK 465 PRO A 532 REMARK 465 ALA A 533 REMARK 465 LEU A 534 REMARK 465 PRO A 535 REMARK 465 PRO A 536 REMARK 465 ILE A 537 REMARK 465 SER A 538 REMARK 465 ASP A 539 REMARK 465 SER A 540 REMARK 465 ARG A 541 REMARK 465 ARG A 542 REMARK 465 THR A 543 REMARK 465 TYR A 544 REMARK 465 GLU A 545 REMARK 465 SER A 546 REMARK 465 ARG A 547 REMARK 465 PRO A 548 REMARK 465 ARG A 549 REMARK 465 GLY A 550 REMARK 465 PRO A 551 REMARK 465 THR A 552 REMARK 465 VAL A 553 REMARK 465 ASN A 554 REMARK 465 SER A 555 REMARK 465 LEU A 556 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 ILE B 2 REMARK 465 ILE B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 ALA B 7 REMARK 465 ASN B 8 REMARK 465 LYS B 9 REMARK 465 ASN B 10 REMARK 465 MET B 11 REMARK 465 PRO B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 VAL B 16 REMARK 465 GLU B 17 REMARK 465 LYS B 18 REMARK 465 PRO B 19 REMARK 465 GLN B 20 REMARK 465 GLU B 21 REMARK 465 ILE B 22 REMARK 465 HIS B 23 REMARK 465 LYS B 24 REMARK 465 GLU B 25 REMARK 465 GLU B 26 REMARK 465 LEU B 27 REMARK 465 SER B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 58 REMARK 465 ASN B 59 REMARK 465 LEU B 60 REMARK 465 ALA B 61 REMARK 465 GLY B 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 184 N GLU A 186 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 116 CG GLU A 116 CD 0.092 REMARK 500 ALA A 165 CA ALA A 165 CB 0.141 REMARK 500 GLU A 324 CB GLU A 324 CG 0.128 REMARK 500 GLU A 324 CG GLU A 324 CD 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 179 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 GLU A 183 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 ARG A 243 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLN A 356 N - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 PRO A 357 C - N - CA ANGL. DEV. = 30.7 DEGREES REMARK 500 PRO A 357 C - N - CD ANGL. DEV. = -23.7 DEGREES REMARK 500 ASP A 402 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 402 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 491 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 491 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 173 -51.04 -25.37 REMARK 500 GLN A 178 64.22 -69.06 REMARK 500 GLU A 183 -52.54 -143.10 REMARK 500 PRO A 184 -134.54 -86.51 REMARK 500 ARG A 185 -39.69 30.29 REMARK 500 LEU A 259 26.15 -146.20 REMARK 500 ASN A 270 20.21 81.04 REMARK 500 ASN A 285 18.09 55.70 REMARK 500 ARG A 355 72.18 47.87 REMARK 500 GLN A 356 -86.40 -92.38 REMARK 500 ASP A 416 72.00 -155.59 REMARK 500 PRO A 459 34.28 -82.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 183 PRO A 184 -30.77 REMARK 500 GLN A 356 PRO A 357 70.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: W00209 RELATED DB: TARGETDB DBREF 3BTP A 1 556 UNP P08062 VIRE2_AGRT5 1 556 DBREF 3BTP B 0 62 UNP P08063 VIRE1_AGRT5 1 63 SEQADV 3BTP LEU A 171 UNP P08062 ILE 171 CONFLICT SEQRES 1 A 556 MET ASP PRO LYS ALA GLU GLY ASN GLY GLU ASN ILE THR SEQRES 2 A 556 GLU THR ALA ALA GLY ASN VAL GLU THR SER ASP PHE VAL SEQRES 3 A 556 ASN LEU LYS ARG GLN LYS ARG GLU GLY VAL ASN SER THR SEQRES 4 A 556 GLY MET SER GLU ILE ASP MET THR GLY SER GLN GLU THR SEQRES 5 A 556 PRO GLU HIS ASN MET HIS GLY SER PRO THR HIS THR ASP SEQRES 6 A 556 ASP LEU GLY PRO ARG LEU ASP ALA ASP MET LEU ASP SER SEQRES 7 A 556 GLN SER SER HIS VAL SER SER SER ALA GLN GLY ASN ARG SEQRES 8 A 556 SER GLU VAL GLU ASN GLU LEU SER ASN LEU PHE ALA LYS SEQRES 9 A 556 MET ALA LEU PRO GLY HIS ASP ARG ARG THR ASP GLU TYR SEQRES 10 A 556 ILE LEU VAL ARG GLN THR GLY GLN ASP LYS PHE ALA GLY SEQRES 11 A 556 THR THR LYS CYS ASN LEU ASP HIS LEU PRO THR LYS ALA SEQRES 12 A 556 GLU PHE ASN ALA SER CYS ARG LEU TYR ARG ASP GLY VAL SEQRES 13 A 556 GLY ASN TYR TYR PRO PRO PRO LEU ALA PHE GLU ARG ILE SEQRES 14 A 556 ASP LEU PRO GLU GLN LEU ALA ALA GLN LEU HIS ASN LEU SEQRES 15 A 556 GLU PRO ARG GLU GLN SER LYS GLN CYS PHE GLN TYR LYS SEQRES 16 A 556 LEU GLU VAL TRP ASN ARG ALA HIS ALA GLU MET GLY ILE SEQRES 17 A 556 THR GLY THR ASP ILE PHE TYR GLN THR ASP LYS ASN ILE SEQRES 18 A 556 LYS LEU ASP ARG ASN TYR LYS LEU ARG PRO GLU ASP ARG SEQRES 19 A 556 TYR ILE GLN THR GLU LYS TYR GLY ARG ARG GLU ILE GLN SEQRES 20 A 556 LYS ARG TYR GLU HIS GLN PHE GLN ALA GLY SER LEU LEU SEQRES 21 A 556 PRO ASP ILE LEU ILE LYS THR PRO GLN ASN ASP ILE HIS SEQRES 22 A 556 PHE SER TYR ARG PHE ALA GLY ASP ALA TYR ALA ASN LYS SEQRES 23 A 556 ARG PHE GLU GLU PHE GLU ARG ALA ILE LYS THR LYS TYR SEQRES 24 A 556 GLY SER ASP THR GLU ILE LYS LEU LYS SER LYS SER GLY SEQRES 25 A 556 ILE MET HIS ASP SER LYS TYR LEU GLU SER TRP GLU ARG SEQRES 26 A 556 GLY SER ALA ASP ILE ARG PHE ALA GLU PHE ALA GLY GLU SEQRES 27 A 556 ASN ARG ALA HIS ASN LYS GLN PHE PRO ALA ALA THR VAL SEQRES 28 A 556 ASN MET GLY ARG GLN PRO ASP GLY GLN GLY GLY MET THR SEQRES 29 A 556 ARG ASP ARG HIS VAL SER VAL ASP TYR LEU LEU GLN ASN SEQRES 30 A 556 LEU PRO ASN SER PRO TRP THR GLN ALA LEU LYS GLU GLY SEQRES 31 A 556 LYS LEU TRP ASP ARG VAL GLN VAL LEU ALA ARG ASP GLY SEQRES 32 A 556 ASN ARG TYR MET SER PRO SER ARG LEU GLU TYR SER ASP SEQRES 33 A 556 PRO GLU HIS PHE THR GLN LEU MET ASP GLN VAL GLY LEU SEQRES 34 A 556 PRO VAL SER MET GLY ARG GLN SER HIS ALA ASN SER VAL SEQRES 35 A 556 LYS PHE GLU GLN PHE ASP ARG GLN ALA ALA VAL ILE VAL SEQRES 36 A 556 ALA ASP GLY PRO ASN LEU ARG GLU VAL PRO ASP LEU SER SEQRES 37 A 556 PRO GLU LYS LEU GLN GLN LEU SER GLN LYS ASP VAL LEU SEQRES 38 A 556 ILE ALA ASP ARG ASN GLU LYS GLY GLN ARG THR GLY THR SEQRES 39 A 556 TYR THR ASN VAL VAL GLU TYR GLU ARG LEU MET MET LYS SEQRES 40 A 556 LEU PRO SER ASP ALA ALA GLN LEU LEU ALA GLU PRO SER SEQRES 41 A 556 ASP ARG TYR SER ARG ALA PHE VAL ARG PRO GLU PRO ALA SEQRES 42 A 556 LEU PRO PRO ILE SER ASP SER ARG ARG THR TYR GLU SER SEQRES 43 A 556 ARG PRO ARG GLY PRO THR VAL ASN SER LEU SEQRES 1 B 63 MET VAL ILE ILE LYS LEU ASN ALA ASN LYS ASN MET PRO SEQRES 2 B 63 VAL LEU ALA VAL GLU LYS PRO GLN GLU ILE HIS LYS GLU SEQRES 3 B 63 GLU LEU SER ASP HIS HIS GLN SER ASN GLY PHE THR SER SEQRES 4 B 63 LEU ASP LEU GLU MET ILE GLU LEU GLU ASN PHE VAL LEU SEQRES 5 B 63 HIS CYS PRO LEU PRO GLU GLU ASN LEU ALA GLY HET NH4 A 601 1 HET PEG A 701 7 HET NH4 B 602 1 HET NH4 B 603 1 HETNAM NH4 AMMONIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 NH4 3(H4 N 1+) FORMUL 4 PEG C4 H10 O3 FORMUL 7 HOH *71(H2 O) HELIX 1 1 CYS A 134 LEU A 136 5 3 HELIX 2 2 THR A 141 SER A 148 1 8 HELIX 3 3 PRO A 161 ARG A 168 1 8 HELIX 4 4 PRO A 172 GLN A 178 1 7 HELIX 5 5 ARG A 185 GLY A 207 1 23 HELIX 6 6 ARG A 230 ASP A 233 5 4 HELIX 7 7 ARG A 287 GLY A 300 1 14 HELIX 8 8 SER A 317 GLU A 324 1 8 HELIX 9 9 GLY A 326 ALA A 336 1 11 HELIX 10 10 VAL A 371 LEU A 378 1 8 HELIX 11 11 SER A 381 GLU A 389 1 9 HELIX 12 12 LEU A 392 ASP A 394 5 3 HELIX 13 13 SER A 408 ASP A 416 1 9 HELIX 14 14 ASP A 416 GLY A 428 1 13 HELIX 15 15 PRO A 430 GLN A 436 5 7 HELIX 16 16 VAL A 464 LEU A 467 5 4 HELIX 17 17 VAL A 498 LEU A 504 1 7 HELIX 18 18 PRO A 509 LEU A 516 1 8 HELIX 19 19 THR B 37 HIS B 52 1 16 SHEET 1 A 4 LYS A 127 THR A 132 0 SHEET 2 A 4 TYR A 117 GLY A 124 -1 N ARG A 121 O ALA A 129 SHEET 3 A 4 CYS A 149 ARG A 153 -1 O LEU A 151 N ILE A 118 SHEET 4 A 4 TYR A 159 TYR A 160 -1 O TYR A 160 N TYR A 152 SHEET 1 B 2 TYR A 235 GLN A 237 0 SHEET 2 B 2 ARG A 243 GLU A 245 -1 O ARG A 244 N ILE A 236 SHEET 1 C 4 ILE A 272 SER A 275 0 SHEET 2 C 4 ILE A 263 LYS A 266 -1 N ILE A 265 O HIS A 273 SHEET 3 C 4 GLU A 304 LYS A 308 -1 O LYS A 306 N LEU A 264 SHEET 4 C 4 MET A 314 ASP A 316 -1 O HIS A 315 N LEU A 307 SHEET 1 D 9 ALA A 349 ASN A 352 0 SHEET 2 D 9 ARG A 367 SER A 370 -1 O VAL A 369 N VAL A 351 SHEET 3 D 9 ASN A 460 ARG A 462 -1 O LEU A 461 N HIS A 368 SHEET 4 D 9 VAL A 453 ALA A 456 -1 N VAL A 455 O ARG A 462 SHEET 5 D 9 VAL A 480 ARG A 485 -1 O LEU A 481 N ILE A 454 SHEET 6 D 9 ARG A 491 ASN A 497 -1 O THR A 496 N ILE A 482 SHEET 7 D 9 ARG A 405 MET A 407 -1 N TYR A 406 O TYR A 495 SHEET 8 D 9 VAL A 396 LEU A 399 -1 N VAL A 398 O MET A 407 SHEET 9 D 9 ALA A 349 ASN A 352 -1 N THR A 350 O GLN A 397 SITE 1 AC1 2 LYS A 248 TYR A 250 SITE 1 AC2 4 HIS B 31 GLN B 32 SER B 33 GLY B 35 SITE 1 AC3 4 ASP A 154 GLY A 155 ARG A 168 GLU B 47 CRYST1 51.020 96.271 112.483 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008890 0.00000