data_3BU9 # _entry.id 3BU9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BU9 RCSB RCSB045962 WWPDB D_1000045962 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BRN . unspecified PDB 3BS2 . unspecified PDB 3BU1 . unspecified # _pdbx_database_status.entry_id 3BU9 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-01-02 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mans, B.J.' 1 'Ribeiro, J.M.' 2 'Andersen, J.F.' 3 # _citation.id primary _citation.title 'Structure, function, and evolution of biogenic amine-binding proteins in soft ticks.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 18721 _citation.page_last 18733 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18445596 _citation.pdbx_database_id_DOI 10.1074/jbc.M800188200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mans, B.J.' 1 primary 'Ribeiro, J.M.' 2 primary 'Andersen, J.F.' 3 # _cell.length_a 36.281 _cell.length_b 56.547 _cell.length_c 58.747 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3BU9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3BU9 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Lipocalin 16180.850 1 ? 'L57,63,87,146M mutant' ? ? 2 water nat water 18.015 156 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)QQQCDTVSAWQSLRGPGTGGYYLFKTTEGGKTDCTYVKGSNFNDAAQTATYTYGN(MSE)GSGNQ(MSE)TQQTA SASISGNAIVVGTDHSEV(MSE)YSDGSTCDVVRLNGQIELWIHSSATSNTGNLNSCCTDKFNQEKGSRPEHVVYRSTCP N(MSE)PQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MQQQCDTVSAWQSLRGPGTGGYYLFKTTEGGKTDCTYVKGSNFNDAAQTATYTYGNMGSGNQMTQQTASASISGNAIVVG TDHSEVMYSDGSTCDVVRLNGQIELWIHSSATSNTGNLNSCCTDKFNQEKGSRPEHVVYRSTCPNMPQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLN n 1 3 GLN n 1 4 GLN n 1 5 CYS n 1 6 ASP n 1 7 THR n 1 8 VAL n 1 9 SER n 1 10 ALA n 1 11 TRP n 1 12 GLN n 1 13 SER n 1 14 LEU n 1 15 ARG n 1 16 GLY n 1 17 PRO n 1 18 GLY n 1 19 THR n 1 20 GLY n 1 21 GLY n 1 22 TYR n 1 23 TYR n 1 24 LEU n 1 25 PHE n 1 26 LYS n 1 27 THR n 1 28 THR n 1 29 GLU n 1 30 GLY n 1 31 GLY n 1 32 LYS n 1 33 THR n 1 34 ASP n 1 35 CYS n 1 36 THR n 1 37 TYR n 1 38 VAL n 1 39 LYS n 1 40 GLY n 1 41 SER n 1 42 ASN n 1 43 PHE n 1 44 ASN n 1 45 ASP n 1 46 ALA n 1 47 ALA n 1 48 GLN n 1 49 THR n 1 50 ALA n 1 51 THR n 1 52 TYR n 1 53 THR n 1 54 TYR n 1 55 GLY n 1 56 ASN n 1 57 MSE n 1 58 GLY n 1 59 SER n 1 60 GLY n 1 61 ASN n 1 62 GLN n 1 63 MSE n 1 64 THR n 1 65 GLN n 1 66 GLN n 1 67 THR n 1 68 ALA n 1 69 SER n 1 70 ALA n 1 71 SER n 1 72 ILE n 1 73 SER n 1 74 GLY n 1 75 ASN n 1 76 ALA n 1 77 ILE n 1 78 VAL n 1 79 VAL n 1 80 GLY n 1 81 THR n 1 82 ASP n 1 83 HIS n 1 84 SER n 1 85 GLU n 1 86 VAL n 1 87 MSE n 1 88 TYR n 1 89 SER n 1 90 ASP n 1 91 GLY n 1 92 SER n 1 93 THR n 1 94 CYS n 1 95 ASP n 1 96 VAL n 1 97 VAL n 1 98 ARG n 1 99 LEU n 1 100 ASN n 1 101 GLY n 1 102 GLN n 1 103 ILE n 1 104 GLU n 1 105 LEU n 1 106 TRP n 1 107 ILE n 1 108 HIS n 1 109 SER n 1 110 SER n 1 111 ALA n 1 112 THR n 1 113 SER n 1 114 ASN n 1 115 THR n 1 116 GLY n 1 117 ASN n 1 118 LEU n 1 119 ASN n 1 120 SER n 1 121 CYS n 1 122 CYS n 1 123 THR n 1 124 ASP n 1 125 LYS n 1 126 PHE n 1 127 ASN n 1 128 GLN n 1 129 GLU n 1 130 LYS n 1 131 GLY n 1 132 SER n 1 133 ARG n 1 134 PRO n 1 135 GLU n 1 136 HIS n 1 137 VAL n 1 138 VAL n 1 139 TYR n 1 140 ARG n 1 141 SER n 1 142 THR n 1 143 CYS n 1 144 PRO n 1 145 ASN n 1 146 MSE n 1 147 PRO n 1 148 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Argas _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Argas monolakensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 34602 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET17b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q09JX9_9ACAR _struct_ref.pdbx_db_accession Q09JX9 _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_seq_one_letter_code ;QQQCDTVSAWQSLRGPGTGGYYLFKTTEGGKTDCTYVKGSNFNDAAQTATYTYGNLGSGNQLTQQTASASISGNAIVVGT DHSEVLYSDGSTCDVVRLNGQIELWIHSSATSNTGNLNSCCTDKFNQEKGSRPEHVVYRSTCPNLPQ ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3BU9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 148 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q09JX9 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 163 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 147 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3BU9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_percent_sol 33.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.pdbx_details '2M ammonium sulfate, 100 mM Tris HCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-03-16 _diffrn_detector.details 'Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Rosenbaum-Rock double crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 3BU9 _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 40.760 _reflns.number_obs 45974 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_netI_over_sigmaI 11.200 _reflns.pdbx_chi_squared 0.993 _reflns.pdbx_redundancy 3.900 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 45974 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.311 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.845 _reflns_shell.pdbx_redundancy 3.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4575 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BU9 _refine.ls_d_res_high 1.400 _refine.ls_d_res_low 40.760 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.800 _refine.ls_number_reflns_obs 24407 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_R_work 0.177 _refine.ls_R_factor_R_free 0.215 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1246 _refine.B_iso_mean 12.226 _refine.aniso_B[1][1] -0.090 _refine.aniso_B[2][2] 0.230 _refine.aniso_B[3][3] -0.140 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.pdbx_overall_ESU_R 0.082 _refine.pdbx_overall_ESU_R_Free 0.071 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 2.040 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 24407 _refine.ls_R_factor_all 0.179 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1091 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 1247 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 40.760 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1118 0.011 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1526 1.237 1.915 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 151 5.898 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 33.965 25.577 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 173 12.665 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 16.421 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 167 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 871 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 484 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 801 0.301 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 122 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 41 0.184 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 20 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 730 1.058 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1159 1.672 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 439 2.821 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 363 3.464 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1169 2.150 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 156 4.025 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1091 2.612 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.380 _refine_ls_shell.number_reflns_R_work 1660 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.R_factor_R_free 0.280 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 92 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1752 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BU9 _struct.title 'Selenomethionine derivative of monomine L57,63,87,146M mutant' _struct.pdbx_descriptor Lipocalin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BU9 _struct_keywords.pdbx_keywords 'LIGAND BINDING PROTEIN' _struct_keywords.text 'BETA BARREL, LIPOCALIN, LIGAND BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? GLY A 16 ? SER A 8 GLY A 15 1 ? 8 HELX_P HELX_P2 2 SER A 110 ? THR A 112 ? SER A 109 THR A 111 5 ? 3 HELX_P HELX_P3 3 ASN A 119 ? GLY A 131 ? ASN A 118 GLY A 130 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 121 SG ? ? A CYS 4 A CYS 120 1_555 ? ? ? ? ? ? ? 2.036 ? disulf2 disulf ? ? A CYS 35 SG ? ? ? 1_555 A CYS 143 SG ? ? A CYS 34 A CYS 142 1_555 ? ? ? ? ? ? ? 2.061 ? disulf3 disulf ? ? A CYS 94 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 93 A CYS 121 1_555 ? ? ? ? ? ? ? 2.029 ? covale1 covale ? ? A ASN 56 C ? ? ? 1_555 A MSE 57 N ? ? A ASN 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 57 C ? ? ? 1_555 A GLY 58 N ? ? A MSE 56 A GLY 57 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A GLN 62 C ? ? ? 1_555 A MSE 63 N ? ? A GLN 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 63 C ? ? ? 1_555 A THR 64 N ? ? A MSE 62 A THR 63 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A VAL 86 C ? ? ? 1_555 A MSE 87 N ? ? A VAL 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.323 ? covale6 covale ? ? A MSE 87 C ? ? ? 1_555 A TYR 88 N ? ? A MSE 86 A TYR 87 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A ASN 145 C ? ? ? 1_555 A MSE 146 N ? ? A ASN 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A MSE 146 C ? ? ? 1_555 A PRO 147 N ? ? A MSE 145 A PRO 146 1_555 ? ? ? ? ? ? ? 1.346 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 136 ? VAL A 137 ? HIS A 135 VAL A 136 A 2 TYR A 22 ? THR A 27 ? TYR A 21 THR A 26 A 3 GLN A 102 ? HIS A 108 ? GLN A 101 HIS A 107 A 4 CYS A 94 ? LEU A 99 ? CYS A 93 LEU A 98 A 5 ASP A 82 ? SER A 89 ? ASP A 81 SER A 88 A 6 ALA A 76 ? VAL A 79 ? ALA A 75 VAL A 78 A 7 GLN A 66 ? SER A 73 ? GLN A 65 SER A 72 A 8 THR A 49 ? GLY A 55 ? THR A 48 GLY A 54 A 9 TYR A 37 ? ASN A 44 ? TYR A 36 ASN A 43 A 10 TYR A 22 ? THR A 27 ? TYR A 21 THR A 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 136 ? O HIS A 135 N THR A 27 ? N THR A 26 A 2 3 N LYS A 26 ? N LYS A 25 O LEU A 105 ? O LEU A 104 A 3 4 O TRP A 106 ? O TRP A 105 N ASP A 95 ? N ASP A 94 A 4 5 O VAL A 96 ? O VAL A 95 N TYR A 88 ? N TYR A 87 A 5 6 O SER A 84 ? O SER A 83 N ILE A 77 ? N ILE A 76 A 6 7 O VAL A 78 ? O VAL A 77 N SER A 71 ? N SER A 70 A 7 8 O ALA A 68 ? O ALA A 67 N TYR A 52 ? N TYR A 51 A 8 9 O THR A 49 ? O THR A 48 N ASN A 44 ? N ASN A 43 A 9 10 O VAL A 38 ? O VAL A 37 N TYR A 22 ? N TYR A 21 # _atom_sites.entry_id 3BU9 _atom_sites.fract_transf_matrix[1][1] 0.027563 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017022 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 0 ? ? ? A . n A 1 2 GLN 2 1 ? ? ? A . n A 1 3 GLN 3 2 ? ? ? A . n A 1 4 GLN 4 3 ? ? ? A . n A 1 5 CYS 5 4 4 CYS CYS A . n A 1 6 ASP 6 5 5 ASP ASP A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 TRP 11 10 10 TRP TRP A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 TYR 23 22 22 TYR TYR A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 THR 27 26 26 THR THR A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 GLY 31 30 30 GLY GLY A . n A 1 32 LYS 32 31 31 LYS LYS A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 CYS 35 34 34 CYS CYS A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 TYR 37 36 36 TYR TYR A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 LYS 39 38 38 LYS LYS A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 SER 41 40 40 SER SER A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 ASP 45 44 44 ASP ASP A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 GLN 48 47 47 GLN GLN A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 TYR 54 53 53 TYR TYR A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 MSE 57 56 56 MSE MSE A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 ASN 61 60 60 ASN ASN A . n A 1 62 GLN 62 61 61 GLN GLN A . n A 1 63 MSE 63 62 62 MSE MSE A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 GLN 65 64 64 GLN GLN A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 ILE 72 71 71 ILE ILE A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 ASN 75 74 74 ASN ASN A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 ILE 77 76 76 ILE ILE A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 HIS 83 82 82 HIS HIS A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 MSE 87 86 86 MSE MSE A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 ASP 90 89 89 ASP ASP A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 THR 93 92 92 THR THR A . n A 1 94 CYS 94 93 93 CYS CYS A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 TRP 106 105 105 TRP TRP A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 HIS 108 107 107 HIS HIS A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 SER 110 109 109 SER SER A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 SER 113 112 112 SER SER A . n A 1 114 ASN 114 113 113 ASN ASN A . n A 1 115 THR 115 114 114 THR THR A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ASN 117 116 116 ASN ASN A . n A 1 118 LEU 118 117 117 LEU LEU A . n A 1 119 ASN 119 118 118 ASN ASN A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 CYS 121 120 120 CYS CYS A . n A 1 122 CYS 122 121 121 CYS CYS A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 PHE 126 125 125 PHE PHE A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 GLN 128 127 127 GLN GLN A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 GLY 131 130 130 GLY GLY A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 HIS 136 135 135 HIS HIS A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 TYR 139 138 138 TYR TYR A . n A 1 140 ARG 140 139 139 ARG ARG A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 THR 142 141 141 THR THR A . n A 1 143 CYS 143 142 142 CYS CYS A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 ASN 145 144 144 ASN ASN A . n A 1 146 MSE 146 145 145 MSE MSE A . n A 1 147 PRO 147 146 146 PRO PRO A . n A 1 148 GLN 148 147 147 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 148 1 HOH HOH A . B 2 HOH 2 149 2 HOH HOH A . B 2 HOH 3 150 3 HOH HOH A . B 2 HOH 4 151 4 HOH HOH A . B 2 HOH 5 152 5 HOH HOH A . B 2 HOH 6 153 6 HOH HOH A . B 2 HOH 7 154 7 HOH HOH A . B 2 HOH 8 155 8 HOH HOH A . B 2 HOH 9 156 9 HOH HOH A . B 2 HOH 10 157 10 HOH HOH A . B 2 HOH 11 158 11 HOH HOH A . B 2 HOH 12 159 12 HOH HOH A . B 2 HOH 13 160 13 HOH HOH A . B 2 HOH 14 161 14 HOH HOH A . B 2 HOH 15 162 15 HOH HOH A . B 2 HOH 16 163 17 HOH HOH A . B 2 HOH 17 164 18 HOH HOH A . B 2 HOH 18 165 19 HOH HOH A . B 2 HOH 19 166 23 HOH HOH A . B 2 HOH 20 167 24 HOH HOH A . B 2 HOH 21 168 25 HOH HOH A . B 2 HOH 22 169 26 HOH HOH A . B 2 HOH 23 170 27 HOH HOH A . B 2 HOH 24 171 28 HOH HOH A . B 2 HOH 25 172 29 HOH HOH A . B 2 HOH 26 173 30 HOH HOH A . B 2 HOH 27 174 31 HOH HOH A . B 2 HOH 28 175 32 HOH HOH A . B 2 HOH 29 176 33 HOH HOH A . B 2 HOH 30 177 34 HOH HOH A . B 2 HOH 31 178 35 HOH HOH A . B 2 HOH 32 179 36 HOH HOH A . B 2 HOH 33 180 37 HOH HOH A . B 2 HOH 34 181 38 HOH HOH A . B 2 HOH 35 182 39 HOH HOH A . B 2 HOH 36 183 40 HOH HOH A . B 2 HOH 37 184 41 HOH HOH A . B 2 HOH 38 185 42 HOH HOH A . B 2 HOH 39 186 43 HOH HOH A . B 2 HOH 40 187 44 HOH HOH A . B 2 HOH 41 188 46 HOH HOH A . B 2 HOH 42 189 47 HOH HOH A . B 2 HOH 43 190 48 HOH HOH A . B 2 HOH 44 191 49 HOH HOH A . B 2 HOH 45 192 50 HOH HOH A . B 2 HOH 46 193 51 HOH HOH A . B 2 HOH 47 194 53 HOH HOH A . B 2 HOH 48 195 54 HOH HOH A . B 2 HOH 49 196 55 HOH HOH A . B 2 HOH 50 197 58 HOH HOH A . B 2 HOH 51 198 59 HOH HOH A . B 2 HOH 52 199 60 HOH HOH A . B 2 HOH 53 200 61 HOH HOH A . B 2 HOH 54 201 62 HOH HOH A . B 2 HOH 55 202 64 HOH HOH A . B 2 HOH 56 203 65 HOH HOH A . B 2 HOH 57 204 67 HOH HOH A . B 2 HOH 58 205 68 HOH HOH A . B 2 HOH 59 206 69 HOH HOH A . B 2 HOH 60 207 70 HOH HOH A . B 2 HOH 61 208 71 HOH HOH A . B 2 HOH 62 209 72 HOH HOH A . B 2 HOH 63 210 73 HOH HOH A . B 2 HOH 64 211 75 HOH HOH A . B 2 HOH 65 212 76 HOH HOH A . B 2 HOH 66 213 77 HOH HOH A . B 2 HOH 67 214 78 HOH HOH A . B 2 HOH 68 215 80 HOH HOH A . B 2 HOH 69 216 81 HOH HOH A . B 2 HOH 70 217 82 HOH HOH A . B 2 HOH 71 218 83 HOH HOH A . B 2 HOH 72 219 85 HOH HOH A . B 2 HOH 73 220 86 HOH HOH A . B 2 HOH 74 221 87 HOH HOH A . B 2 HOH 75 222 88 HOH HOH A . B 2 HOH 76 223 89 HOH HOH A . B 2 HOH 77 224 90 HOH HOH A . B 2 HOH 78 225 91 HOH HOH A . B 2 HOH 79 226 92 HOH HOH A . B 2 HOH 80 227 93 HOH HOH A . B 2 HOH 81 228 94 HOH HOH A . B 2 HOH 82 229 95 HOH HOH A . B 2 HOH 83 230 96 HOH HOH A . B 2 HOH 84 231 97 HOH HOH A . B 2 HOH 85 232 98 HOH HOH A . B 2 HOH 86 233 99 HOH HOH A . B 2 HOH 87 234 100 HOH HOH A . B 2 HOH 88 235 101 HOH HOH A . B 2 HOH 89 236 102 HOH HOH A . B 2 HOH 90 237 103 HOH HOH A . B 2 HOH 91 238 104 HOH HOH A . B 2 HOH 92 239 105 HOH HOH A . B 2 HOH 93 240 106 HOH HOH A . B 2 HOH 94 241 107 HOH HOH A . B 2 HOH 95 242 108 HOH HOH A . B 2 HOH 96 243 109 HOH HOH A . B 2 HOH 97 244 110 HOH HOH A . B 2 HOH 98 245 111 HOH HOH A . B 2 HOH 99 246 112 HOH HOH A . B 2 HOH 100 247 113 HOH HOH A . B 2 HOH 101 248 114 HOH HOH A . B 2 HOH 102 249 116 HOH HOH A . B 2 HOH 103 250 117 HOH HOH A . B 2 HOH 104 251 118 HOH HOH A . B 2 HOH 105 252 119 HOH HOH A . B 2 HOH 106 253 120 HOH HOH A . B 2 HOH 107 254 121 HOH HOH A . B 2 HOH 108 255 122 HOH HOH A . B 2 HOH 109 256 124 HOH HOH A . B 2 HOH 110 257 125 HOH HOH A . B 2 HOH 111 258 126 HOH HOH A . B 2 HOH 112 259 129 HOH HOH A . B 2 HOH 113 260 130 HOH HOH A . B 2 HOH 114 261 131 HOH HOH A . B 2 HOH 115 262 132 HOH HOH A . B 2 HOH 116 263 134 HOH HOH A . B 2 HOH 117 264 136 HOH HOH A . B 2 HOH 118 265 137 HOH HOH A . B 2 HOH 119 266 138 HOH HOH A . B 2 HOH 120 267 139 HOH HOH A . B 2 HOH 121 268 140 HOH HOH A . B 2 HOH 122 269 141 HOH HOH A . B 2 HOH 123 270 143 HOH HOH A . B 2 HOH 124 271 144 HOH HOH A . B 2 HOH 125 272 145 HOH HOH A . B 2 HOH 126 273 146 HOH HOH A . B 2 HOH 127 274 149 HOH HOH A . B 2 HOH 128 275 150 HOH HOH A . B 2 HOH 129 276 153 HOH HOH A . B 2 HOH 130 277 155 HOH HOH A . B 2 HOH 131 278 156 HOH HOH A . B 2 HOH 132 279 157 HOH HOH A . B 2 HOH 133 280 158 HOH HOH A . B 2 HOH 134 281 159 HOH HOH A . B 2 HOH 135 282 160 HOH HOH A . B 2 HOH 136 283 162 HOH HOH A . B 2 HOH 137 284 163 HOH HOH A . B 2 HOH 138 285 164 HOH HOH A . B 2 HOH 139 286 166 HOH HOH A . B 2 HOH 140 287 167 HOH HOH A . B 2 HOH 141 288 169 HOH HOH A . B 2 HOH 142 289 170 HOH HOH A . B 2 HOH 143 290 172 HOH HOH A . B 2 HOH 144 291 173 HOH HOH A . B 2 HOH 145 292 179 HOH HOH A . B 2 HOH 146 293 180 HOH HOH A . B 2 HOH 147 294 181 HOH HOH A . B 2 HOH 148 295 182 HOH HOH A . B 2 HOH 149 296 183 HOH HOH A . B 2 HOH 150 297 185 HOH HOH A . B 2 HOH 151 298 189 HOH HOH A . B 2 HOH 152 299 191 HOH HOH A . B 2 HOH 153 300 193 HOH HOH A . B 2 HOH 154 301 196 HOH HOH A . B 2 HOH 155 302 198 HOH HOH A . B 2 HOH 156 303 199 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 57 A MSE 56 ? MET SELENOMETHIONINE 2 A MSE 63 A MSE 62 ? MET SELENOMETHIONINE 3 A MSE 87 A MSE 86 ? MET SELENOMETHIONINE 4 A MSE 146 A MSE 145 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.400 _diffrn_reflns.pdbx_d_res_low 20.000 _diffrn_reflns.pdbx_number_obs 45974 _diffrn_reflns.pdbx_Rmerge_I_obs 0.050 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.99 _diffrn_reflns.av_sigmaI_over_netI 11.20 _diffrn_reflns.pdbx_redundancy 3.90 _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 181485 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.01 20.00 ? ? 0.027 ? 1.155 4.00 99.70 1 2.39 3.01 ? ? 0.038 ? 1.305 4.00 100.00 1 2.09 2.39 ? ? 0.044 ? 1.144 4.10 100.00 1 1.90 2.09 ? ? 0.061 ? 1.251 4.10 100.00 1 1.76 1.90 ? ? 0.079 ? 0.851 4.10 100.00 1 1.66 1.76 ? ? 0.113 ? 0.802 4.00 100.00 1 1.58 1.66 ? ? 0.146 ? 0.791 4.00 100.00 1 1.51 1.58 ? ? 0.200 ? 0.881 4.00 100.00 1 1.45 1.51 ? ? 0.251 ? 0.873 3.90 100.00 1 1.40 1.45 ? ? 0.311 ? 0.845 3.50 100.00 # _pdbx_phasing_MAD_set.id 1 _pdbx_phasing_MAD_set.d_res_high 1.40 _pdbx_phasing_MAD_set.d_res_low 15.00 _pdbx_phasing_MAD_set.reflns_acentric 21483 _pdbx_phasing_MAD_set.loc_acentric 0.100 _pdbx_phasing_MAD_set.power_acentric 0.000 _pdbx_phasing_MAD_set.R_cullis_acentric 2.000 _pdbx_phasing_MAD_set.reflns_centric 2923 _pdbx_phasing_MAD_set.loc_centric 0.100 _pdbx_phasing_MAD_set.power_centric 0.000 _pdbx_phasing_MAD_set.R_cullis_centric 1.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 6.77 15.00 138 0.400 0.000 1.630 104 0.200 0.000 1.000 1 4.38 6.77 465 0.400 0.000 1.510 170 0.200 0.000 1.000 1 3.23 4.38 997 0.300 0.000 1.180 250 0.200 0.000 1.000 1 2.56 3.23 1719 0.200 0.000 1.450 326 0.100 0.000 1.000 1 2.12 2.56 2647 0.200 0.000 1.600 404 0.100 0.000 1.000 1 1.81 2.12 3777 0.100 0.000 2.050 484 0.100 0.000 1.000 1 1.58 1.81 5120 0.100 0.000 3.730 555 0.000 0.000 1.000 1 1.40 1.58 6620 0.100 0.000 5.850 630 0.000 0.000 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.141 -0.160 -0.049 14.41721 0.000 2 Se 0.002 -0.067 -0.051 22.15480 0.000 3 Se -0.241 -0.223 -0.019 25.59943 0.000 4 Se -0.248 -0.249 0.275 35.72920 0.000 5 Se -0.212 -0.232 0.304 10.38099 0.000 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 6.77 15.00 242 0.305 104 0.000 138 0.535 4.38 6.77 635 0.423 170 0.000 465 0.578 3.23 4.38 1247 0.424 250 0.000 997 0.530 2.56 3.23 2045 0.456 326 0.000 1719 0.543 2.12 2.56 3051 0.450 404 0.000 2647 0.518 1.81 2.12 4261 0.384 484 0.000 3777 0.433 1.58 1.81 5675 0.282 555 0.000 5120 0.312 1.40 1.58 7250 0.171 630 0.000 6620 0.188 # _pdbx_phasing_dm.entry_id 3BU9 _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 16497 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.240 100.000 68.000 ? ? ? 0.783 ? ? 506 4.160 5.240 63.100 ? ? ? 0.862 ? ? 508 3.610 4.160 63.100 ? ? ? 0.879 ? ? 507 3.270 3.610 60.400 ? ? ? 0.867 ? ? 506 3.030 3.270 59.000 ? ? ? 0.843 ? ? 505 2.850 3.030 61.200 ? ? ? 0.866 ? ? 508 2.700 2.850 62.300 ? ? ? 0.867 ? ? 513 2.580 2.700 57.700 ? ? ? 0.875 ? ? 507 2.470 2.580 61.500 ? ? ? 0.851 ? ? 536 2.380 2.470 63.700 ? ? ? 0.868 ? ? 567 2.290 2.380 57.800 ? ? ? 0.885 ? ? 575 2.220 2.290 61.000 ? ? ? 0.879 ? ? 604 2.150 2.220 55.200 ? ? ? 0.891 ? ? 605 2.090 2.150 59.000 ? ? ? 0.890 ? ? 630 2.030 2.090 54.900 ? ? ? 0.876 ? ? 638 1.970 2.030 60.600 ? ? ? 0.887 ? ? 692 1.930 1.970 58.600 ? ? ? 0.867 ? ? 674 1.880 1.930 55.900 ? ? ? 0.845 ? ? 710 1.840 1.880 60.100 ? ? ? 0.860 ? ? 716 1.800 1.840 62.400 ? ? ? 0.834 ? ? 727 1.760 1.800 61.600 ? ? ? 0.841 ? ? 742 1.720 1.760 62.000 ? ? ? 0.846 ? ? 749 1.690 1.720 66.800 ? ? ? 0.819 ? ? 797 1.660 1.690 66.100 ? ? ? 0.816 ? ? 785 1.630 1.660 66.500 ? ? ? 0.773 ? ? 801 1.600 1.630 67.700 ? ? ? 0.763 ? ? 889 # _phasing.method SAD # _phasing_MAD.entry_id 3BU9 _phasing_MAD.pdbx_d_res_high 1.40 _phasing_MAD.pdbx_d_res_low 15.00 _phasing_MAD.pdbx_reflns 24406 _phasing_MAD.pdbx_fom 0.314 _phasing_MAD.pdbx_reflns_centric 2923 _phasing_MAD.pdbx_fom_centric 0.000 _phasing_MAD.pdbx_reflns_acentric 21483 _phasing_MAD.pdbx_fom_acentric 0.356 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 HKL-3000 . ? ? ? ? 'data collection' ? ? ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 ND2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 74 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 215 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 91 ? ? -136.11 -46.50 2 1 ASN A 113 ? ? -145.17 44.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 0 ? A MSE 1 2 1 Y 1 A GLN 1 ? A GLN 2 3 1 Y 1 A GLN 2 ? A GLN 3 4 1 Y 1 A GLN 3 ? A GLN 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #