HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-JAN-08 3BUU TITLE CRYSTAL STRUCTURE OF LOLA SUPERFAMILY PROTEIN NE2245 FROM TITLE 2 NITROSOMONAS EUROPAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED LOLA SUPERFAMILY PROTEIN NE2245; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-257; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA ATCC 19718; SOURCE 3 ORGANISM_TAXID: 228410; SOURCE 4 STRAIN: IFO 14298; SOURCE 5 GENE: NE2245; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS LOLA SUPERFAMILY, NITROSOMONAS EUROPAEA, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,R.WU,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 24-FEB-09 3BUU 1 VERSN REVDAT 1 22-JAN-08 3BUU 0 JRNL AUTH C.CHANG,R.WU,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF LOLA SUPERFAMILY PROTEIN JRNL TITL 2 NE2245 FROM NITROSOMONAS EUROPAEA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 112526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.1690 REMARK 3 BIN FREE R VALUE SET COUNT : 395 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4140 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5686 ; 1.702 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 553 ; 6.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;31.402 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;13.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;14.989 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3303 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1861 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2910 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 411 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 172 ; 0.288 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 80 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2569 ; 2.099 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4122 ; 2.786 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1774 ; 4.076 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1541 ; 5.472 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 51 REMARK 3 RESIDUE RANGE : A 137 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0651 27.6242 39.3614 REMARK 3 T TENSOR REMARK 3 T11: -0.0088 T22: 0.0001 REMARK 3 T33: -0.0069 T12: 0.0009 REMARK 3 T13: 0.0001 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0869 L22: 0.1580 REMARK 3 L33: 0.1679 L12: 0.0501 REMARK 3 L13: -0.0332 L23: -0.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0122 S13: 0.0000 REMARK 3 S21: 0.0019 S22: -0.0028 S23: -0.0036 REMARK 3 S31: 0.0056 S32: -0.0030 S33: 0.0036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 119 REMARK 3 RESIDUE RANGE : A 242 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4996 27.9837 19.6845 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: -0.0008 REMARK 3 T33: -0.0044 T12: -0.0043 REMARK 3 T13: 0.0007 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0786 L22: 0.0478 REMARK 3 L33: 0.2895 L12: -0.0574 REMARK 3 L13: -0.0797 L23: 0.0934 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0072 S13: -0.0028 REMARK 3 S21: -0.0287 S22: 0.0043 S23: -0.0028 REMARK 3 S31: -0.0263 S32: 0.0272 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 42.7442 27.8259 30.4410 REMARK 3 T TENSOR REMARK 3 T11: -0.0108 T22: 0.0023 REMARK 3 T33: -0.0072 T12: -0.0006 REMARK 3 T13: 0.0007 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.3125 L22: 1.3420 REMARK 3 L33: 0.5887 L12: 0.2109 REMARK 3 L13: -0.1630 L23: 0.5956 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.0278 S13: 0.0010 REMARK 3 S21: -0.0237 S22: 0.0322 S23: -0.0291 REMARK 3 S31: -0.0093 S32: 0.0229 S33: -0.0126 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 51 REMARK 3 RESIDUE RANGE : B 137 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): 48.8183 57.4098 5.1057 REMARK 3 T TENSOR REMARK 3 T11: -0.0076 T22: -0.0072 REMARK 3 T33: -0.0037 T12: 0.0003 REMARK 3 T13: -0.0020 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2733 L22: 0.3852 REMARK 3 L33: 0.1441 L12: -0.2659 REMARK 3 L13: -0.0532 L23: 0.0194 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.0175 S13: 0.0111 REMARK 3 S21: 0.0252 S22: 0.0198 S23: -0.0113 REMARK 3 S31: -0.0048 S32: -0.0068 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 119 REMARK 3 RESIDUE RANGE : B 242 B 253 REMARK 3 ORIGIN FOR THE GROUP (A): 58.3123 58.7556 23.8708 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.0010 REMARK 3 T33: -0.0132 T12: 0.0331 REMARK 3 T13: -0.0284 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3585 L22: 0.1728 REMARK 3 L33: 0.3434 L12: 0.0988 REMARK 3 L13: 0.0982 L23: 0.2417 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.0628 S13: 0.0503 REMARK 3 S21: 0.1713 S22: 0.0599 S23: -0.0378 REMARK 3 S31: 0.0579 S32: 0.0331 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 60.5330 57.9363 13.9217 REMARK 3 T TENSOR REMARK 3 T11: -0.0032 T22: -0.0001 REMARK 3 T33: -0.0086 T12: 0.0129 REMARK 3 T13: -0.0181 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.2982 L22: 2.8677 REMARK 3 L33: 1.1405 L12: -0.9621 REMARK 3 L13: -0.4119 L23: 1.2967 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: -0.0962 S13: 0.0668 REMARK 3 S21: 0.1270 S22: 0.1447 S23: -0.1013 REMARK 3 S31: 0.0480 S32: 0.0475 S33: -0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3BUU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB045983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 25% PEG 1000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.55800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 ALA A 31 REMARK 465 LYS A 32 REMARK 465 SER A 33 REMARK 465 SER B 29 REMARK 465 ASN B 30 REMARK 465 ALA B 31 REMARK 465 LYS B 32 REMARK 465 SER B 33 REMARK 465 LYS B 254 REMARK 465 ARG B 255 REMARK 465 LEU B 256 REMARK 465 GLU B 257 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 67 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 57 O HOH A 294 1.81 REMARK 500 OD1 ASN A 57 O HOH A 309 1.88 REMARK 500 O HOH A 381 O HOH A 428 1.92 REMARK 500 CB SER B 195 O HOH B 376 2.02 REMARK 500 CH2 TRP B 107 O HOH B 335 2.05 REMARK 500 O HOH B 359 O HOH B 362 2.08 REMARK 500 O HOH B 302 O HOH B 320 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 104 NE2 GLN B 115 1445 1.76 REMARK 500 O PRO A 65 O HOH A 429 2756 1.83 REMARK 500 O ALA B 34 O HOH B 356 2855 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 66 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 125 -71.22 -84.63 REMARK 500 ASP A 154 -135.84 72.05 REMARK 500 LEU A 225 -132.76 -94.38 REMARK 500 ASP B 154 -129.92 56.91 REMARK 500 LEU B 225 -131.11 -93.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87350.1 RELATED DB: TARGETDB DBREF 3BUU A 32 257 UNP Q82SR2 Q82SR2_NITEU 32 257 DBREF 3BUU B 32 257 UNP Q82SR2 Q82SR2_NITEU 32 257 SEQADV 3BUU SER A 29 UNP Q82SR2 EXPRESSION TAG SEQADV 3BUU ASN A 30 UNP Q82SR2 EXPRESSION TAG SEQADV 3BUU ALA A 31 UNP Q82SR2 EXPRESSION TAG SEQADV 3BUU SER B 29 UNP Q82SR2 EXPRESSION TAG SEQADV 3BUU ASN B 30 UNP Q82SR2 EXPRESSION TAG SEQADV 3BUU ALA B 31 UNP Q82SR2 EXPRESSION TAG SEQRES 1 A 229 SER ASN ALA LYS SER ALA VAL THR ALA GLN SER ILE LEU SEQRES 2 A 229 GLU LYS ALA ASP GLU ILE ARG PHE PRO GLN ASP SER PHE SEQRES 3 A 229 GLN VAL ASN VAL ALA ILE ARG THR ALA ALA PRO ASP HIS SEQRES 4 A 229 ALA GLU ASP LEU TYR ARG TYR GLN VAL LEU SER LYS GLY SEQRES 5 A 229 ASN GLU ASN SER ILE VAL MSE ILE THR GLU PRO ALA SER SEQRES 6 A 229 GLU ARG GLY GLN ALA ILE LEU MSE LYS GLY ARG ASP LEU SEQRES 7 A 229 TRP VAL PHE MSE PRO SER VAL SER GLN PRO ILE ARG LEU SEQRES 8 A 229 SER LEU SER GLN ARG LEU THR GLY GLN VAL ALA ASN GLY SEQRES 9 A 229 ASP ILE ALA ARG ALA ASN PHE THR GLY ASP TYR HIS PRO SEQRES 10 A 229 GLN LEU LEU ARG ASN GLU SER ILE ASP ASP GLU ASP TYR SEQRES 11 A 229 TYR VAL LEU GLU LEU THR GLY ILE ASP ARG SER VAL THR SEQRES 12 A 229 TYR GLN LYS VAL LEU LEU TRP VAL ASN GLN SER ASN PHE SEQRES 13 A 229 ARG PRO TYR LYS ALA GLU PHE TYR SER VAL SER GLY ARG SEQRES 14 A 229 LEU LEU LYS THR SER ARG TYR GLU ASN PHE ASP ASN ILE SEQRES 15 A 229 LEU GLY GLU MSE ARG PRO THR ARG ILE ILE MSE GLU ASP SEQRES 16 A 229 ALA LEU LYS SER GLY GLU VAL SER VAL LEU ASP TYR SER SEQRES 17 A 229 ASP MSE LYS LEU ARG ASP LEU PRO ASP LYS ILE PHE THR SEQRES 18 A 229 LYS ASP TYR LEU LYS ARG LEU GLU SEQRES 1 B 229 SER ASN ALA LYS SER ALA VAL THR ALA GLN SER ILE LEU SEQRES 2 B 229 GLU LYS ALA ASP GLU ILE ARG PHE PRO GLN ASP SER PHE SEQRES 3 B 229 GLN VAL ASN VAL ALA ILE ARG THR ALA ALA PRO ASP HIS SEQRES 4 B 229 ALA GLU ASP LEU TYR ARG TYR GLN VAL LEU SER LYS GLY SEQRES 5 B 229 ASN GLU ASN SER ILE VAL MSE ILE THR GLU PRO ALA SER SEQRES 6 B 229 GLU ARG GLY GLN ALA ILE LEU MSE LYS GLY ARG ASP LEU SEQRES 7 B 229 TRP VAL PHE MSE PRO SER VAL SER GLN PRO ILE ARG LEU SEQRES 8 B 229 SER LEU SER GLN ARG LEU THR GLY GLN VAL ALA ASN GLY SEQRES 9 B 229 ASP ILE ALA ARG ALA ASN PHE THR GLY ASP TYR HIS PRO SEQRES 10 B 229 GLN LEU LEU ARG ASN GLU SER ILE ASP ASP GLU ASP TYR SEQRES 11 B 229 TYR VAL LEU GLU LEU THR GLY ILE ASP ARG SER VAL THR SEQRES 12 B 229 TYR GLN LYS VAL LEU LEU TRP VAL ASN GLN SER ASN PHE SEQRES 13 B 229 ARG PRO TYR LYS ALA GLU PHE TYR SER VAL SER GLY ARG SEQRES 14 B 229 LEU LEU LYS THR SER ARG TYR GLU ASN PHE ASP ASN ILE SEQRES 15 B 229 LEU GLY GLU MSE ARG PRO THR ARG ILE ILE MSE GLU ASP SEQRES 16 B 229 ALA LEU LYS SER GLY GLU VAL SER VAL LEU ASP TYR SER SEQRES 17 B 229 ASP MSE LYS LEU ARG ASP LEU PRO ASP LYS ILE PHE THR SEQRES 18 B 229 LYS ASP TYR LEU LYS ARG LEU GLU MODRES 3BUU MSE A 87 MET SELENOMETHIONINE MODRES 3BUU MSE A 101 MET SELENOMETHIONINE MODRES 3BUU MSE A 110 MET SELENOMETHIONINE MODRES 3BUU MSE A 214 MET SELENOMETHIONINE MODRES 3BUU MSE A 221 MET SELENOMETHIONINE MODRES 3BUU MSE A 238 MET SELENOMETHIONINE MODRES 3BUU MSE B 87 MET SELENOMETHIONINE MODRES 3BUU MSE B 101 MET SELENOMETHIONINE MODRES 3BUU MSE B 110 MET SELENOMETHIONINE MODRES 3BUU MSE B 214 MET SELENOMETHIONINE MODRES 3BUU MSE B 221 MET SELENOMETHIONINE MODRES 3BUU MSE B 238 MET SELENOMETHIONINE HET MSE A 87 8 HET MSE A 101 8 HET MSE A 110 13 HET MSE A 214 8 HET MSE A 221 13 HET MSE A 238 8 HET MSE B 87 8 HET MSE B 101 13 HET MSE B 110 16 HET MSE B 214 8 HET MSE B 221 13 HET MSE B 238 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *449(H2 O) HELIX 1 1 THR A 36 PHE A 49 1 14 HELIX 2 2 ASN A 131 ARG A 136 1 6 HELIX 3 3 PRO A 244 PHE A 248 5 5 HELIX 4 4 LYS A 250 LYS A 254 5 5 HELIX 5 5 THR B 36 PHE B 49 1 14 HELIX 6 6 ASN B 131 ARG B 136 1 6 HELIX 7 7 PRO B 244 PHE B 248 5 5 HELIX 8 8 THR B 249 LEU B 253 5 5 SHEET 1 A 7 HIS A 67 ALA A 68 0 SHEET 2 A 7 PHE A 54 ALA A 64 -1 N ALA A 64 O HIS A 67 SHEET 3 A 7 TYR A 72 LYS A 79 -1 O SER A 78 N PHE A 54 SHEET 4 A 7 ASN A 83 GLU A 90 -1 O THR A 89 N ARG A 73 SHEET 5 A 7 ALA A 98 LYS A 102 -1 O MSE A 101 N SER A 84 SHEET 6 A 7 ASP A 105 PHE A 109 -1 O TRP A 107 N LEU A 100 SHEET 7 A 7 ILE A 117 LEU A 119 -1 O ILE A 117 N VAL A 108 SHEET 1 B 9 HIS A 67 ALA A 68 0 SHEET 2 B 9 PHE A 54 ALA A 64 -1 N ALA A 64 O HIS A 67 SHEET 3 B 9 VAL A 230 LEU A 240 -1 O LYS A 239 N GLN A 55 SHEET 4 B 9 GLU A 213 ASP A 223 -1 N ILE A 219 O LEU A 233 SHEET 5 B 9 LEU A 198 ILE A 210 -1 N GLU A 205 O ARG A 218 SHEET 6 B 9 PRO A 186 TYR A 192 -1 N PHE A 191 O LEU A 199 SHEET 7 B 9 LYS A 174 ASN A 180 -1 N TRP A 178 O LYS A 188 SHEET 8 B 9 GLU A 156 GLY A 165 -1 N LEU A 163 O VAL A 175 SHEET 9 B 9 TYR A 143 ILE A 153 -1 N GLN A 146 O GLU A 162 SHEET 1 C 2 ARG A 124 THR A 126 0 SHEET 2 C 2 VAL A 129 ALA A 130 -1 O VAL A 129 N LEU A 125 SHEET 1 D13 ILE B 117 LEU B 119 0 SHEET 2 D13 ASP B 105 VAL B 108 -1 N LEU B 106 O LEU B 119 SHEET 3 D13 ALA B 98 LYS B 102 -1 N LEU B 100 O TRP B 107 SHEET 4 D13 ASN B 83 GLU B 90 -1 N VAL B 86 O ILE B 99 SHEET 5 D13 ASP B 70 LYS B 79 -1 N GLN B 75 O MSE B 87 SHEET 6 D13 PHE B 54 ALA B 63 -1 N ILE B 60 O TYR B 72 SHEET 7 D13 VAL B 230 LEU B 240 -1 O LYS B 239 N GLN B 55 SHEET 8 D13 GLU B 213 ASP B 223 -1 N MSE B 221 O SER B 231 SHEET 9 D13 LEU B 198 ILE B 210 -1 N GLU B 205 O ARG B 218 SHEET 10 D13 PRO B 186 TYR B 192 -1 N PHE B 191 O LEU B 199 SHEET 11 D13 LYS B 174 ASN B 180 -1 N TRP B 178 O LYS B 188 SHEET 12 D13 GLU B 156 GLY B 165 -1 N LEU B 163 O VAL B 175 SHEET 13 D13 TYR B 143 ILE B 153 -1 N GLU B 151 O TYR B 158 SHEET 1 E 2 ARG B 124 THR B 126 0 SHEET 2 E 2 VAL B 129 ALA B 130 -1 O VAL B 129 N LEU B 125 LINK C VAL A 86 N MSE A 87 1555 1555 1.32 LINK C MSE A 87 N ILE A 88 1555 1555 1.33 LINK C LEU A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N LYS A 102 1555 1555 1.34 LINK C PHE A 109 N MSE A 110 1555 1555 1.35 LINK C MSE A 110 N PRO A 111 1555 1555 1.36 LINK C GLU A 213 N MSE A 214 1555 1555 1.34 LINK C MSE A 214 N ARG A 215 1555 1555 1.33 LINK C ILE A 220 N MSE A 221 1555 1555 1.32 LINK C MSE A 221 N AGLU A 222 1555 1555 1.33 LINK C MSE A 221 N BGLU A 222 1555 1555 1.34 LINK C ASP A 237 N MSE A 238 1555 1555 1.31 LINK C MSE A 238 N LYS A 239 1555 1555 1.32 LINK C VAL B 86 N MSE B 87 1555 1555 1.32 LINK C MSE B 87 N AILE B 88 1555 1555 1.32 LINK C MSE B 87 N BILE B 88 1555 1555 1.33 LINK C ALEU B 100 N MSE B 101 1555 1555 1.33 LINK C BLEU B 100 N MSE B 101 1555 1555 1.34 LINK C MSE B 101 N LYS B 102 1555 1555 1.34 LINK C PHE B 109 N AMSE B 110 1555 1555 1.32 LINK C PHE B 109 N BMSE B 110 1555 1555 1.32 LINK C AMSE B 110 N PRO B 111 1555 1555 1.34 LINK C BMSE B 110 N PRO B 111 1555 1555 1.34 LINK C GLU B 213 N MSE B 214 1555 1555 1.31 LINK C MSE B 214 N ARG B 215 1555 1555 1.34 LINK C ILE B 220 N MSE B 221 1555 1555 1.33 LINK C MSE B 221 N GLU B 222 1555 1555 1.32 LINK C ASP B 237 N MSE B 238 1555 1555 1.32 LINK C MSE B 238 N ALYS B 239 1555 1555 1.33 LINK C MSE B 238 N BLYS B 239 1555 1555 1.34 CISPEP 1 GLU A 90 PRO A 91 0 3.89 CISPEP 2 GLU B 90 PRO B 91 0 4.16 CRYST1 35.019 59.116 89.676 90.00 90.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028556 0.000000 0.000359 0.00000 SCALE2 0.000000 0.016916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011152 0.00000