HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-JAN-08 3BVC TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN ISM_01780 FROM TITLE 2 ROSEOVARIUS NUBINHIBENS ISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ISM_01780; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOVARIUS NUBINHIBENS; SOURCE 3 ORGANISM_TAXID: 89187; SOURCE 4 STRAIN: ISM; SOURCE 5 GENE: ISM_01780; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS RHODOBACTERALES, ROSEOVARIUS NUBINHIBENS ISM, NICKEL, IRON-BINDING KEYWDS 2 PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, KEYWDS 4 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,A.J.MEYER,M.RUTTER,M.IIZUKA,M.MALETIC,D.SMITH, AUTHOR 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 3BVC 1 REMARK REVDAT 6 03-FEB-21 3BVC 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 14-NOV-18 3BVC 1 AUTHOR REVDAT 4 25-OCT-17 3BVC 1 REMARK REVDAT 3 13-JUL-11 3BVC 1 VERSN REVDAT 2 24-FEB-09 3BVC 1 VERSN REVDAT 1 12-FEB-08 3BVC 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,A.J.MEYER,M.RUTTER,M.IIZUKA,M.MALETIC, JRNL AUTH 2 D.SMITH,S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN ISM_01780 JRNL TITL 2 FROM ROSEOVARIUS NUBINHIBENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 17858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 87.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : -1.63000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.586 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.362 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.290 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.133 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3298 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4496 ; 1.024 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 5.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;32.355 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;18.155 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2588 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1311 ; 0.120 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2186 ; 0.298 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.130 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 110 ; 0.093 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.111 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2081 ; 4.173 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3252 ; 6.182 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 9.625 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1244 ;13.513 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 208 1 REMARK 3 1 B 6 B 208 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1602 ; 0.33 ; 0.10 REMARK 3 TIGHT THERMAL 1 B (A**2): 1602 ; 1.24 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7770 8.8900 -24.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: -0.0851 REMARK 3 T33: -0.0110 T12: 0.1237 REMARK 3 T13: -0.0109 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 3.9186 L22: 1.7102 REMARK 3 L33: 3.4454 L12: -1.1830 REMARK 3 L13: -1.9449 L23: 0.7401 REMARK 3 S TENSOR REMARK 3 S11: -0.3068 S12: -0.4994 S13: -0.2453 REMARK 3 S21: 0.3691 S22: 0.1688 S23: 0.3112 REMARK 3 S31: 0.2209 S32: -0.1013 S33: 0.1381 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5540 -11.4610 -55.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: -0.0324 REMARK 3 T33: -0.0231 T12: -0.1465 REMARK 3 T13: 0.0045 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.6989 L22: 1.8888 REMARK 3 L33: 3.5932 L12: 1.2318 REMARK 3 L13: 1.6382 L23: 1.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.3678 S12: 0.6479 S13: 0.1947 REMARK 3 S21: -0.4603 S22: 0.2547 S23: 0.2338 REMARK 3 S31: -0.1655 S32: -0.1094 S33: 0.1132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. COORDINATION PARAMETERS FOR BOUND METALS REMARK 3 MAY DEVIATE SIGNIFICANTLY FROM IDEAL VALUES DUE TO LOW REMARK 3 RESOLUTION OF DIFFRACTION DATA. 3. THE PRESENCE OF NICKEL BOUND REMARK 3 TO THE PROTEIN WAS DETERMINED EXPERIMENTALLY, HOWEVER, IRON, REMARK 3 WHICH IS A MOST LIKELY NATURAL LIGAND FOR THIS AND SIMILAR REMARK 3 PROTEINS, MIGHT HAVE BEEN REPLACED WITH NICKEL DURING PROTEIN REMARK 3 PURIFICATION USING A NICKEL RESIN. REMARK 4 REMARK 4 3BVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 77.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.2M CALCIUM CHLORIDE, 28% REMARK 280 PEG 400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.20250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.98650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.20250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.98650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13580 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 MET B 5 REMARK 465 GLU B 209 REMARK 465 GLY B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 98.43 -63.47 REMARK 500 THR A 64 -81.65 -116.44 REMARK 500 ASP A 96 -131.09 53.47 REMARK 500 MET A 151 35.20 -96.52 REMARK 500 SER B 62 -62.81 -130.36 REMARK 500 THR B 64 -78.90 -92.83 REMARK 500 ASP B 96 -137.92 56.78 REMARK 500 VAL B 125 -62.19 -105.98 REMARK 500 MET B 151 42.76 -91.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 159 THR B 160 -125.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 112 OE1 REMARK 620 2 GLU A 195 OE1 68.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 304 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 121 NE2 96.1 REMARK 620 3 HIS A 187 NE2 78.1 93.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 305 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 119 NE2 REMARK 620 2 HIS B 121 NE2 95.0 REMARK 620 3 HIS B 187 NE2 94.7 95.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10416J RELATED DB: TARGETDB DBREF 3BVC A 8 208 UNP A3SHZ8 A3SHZ8_9RHOB 6 206 DBREF 3BVC B 8 208 UNP A3SHZ8 A3SHZ8_9RHOB 6 206 SEQADV 3BVC MET A 5 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC SER A 6 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC LEU A 7 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC GLU A 209 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC GLY A 210 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS A 211 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS A 212 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS A 213 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS A 214 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS A 215 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS A 216 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC MET B 5 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC SER B 6 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC LEU B 7 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC GLU B 209 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC GLY B 210 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS B 211 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS B 212 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS B 213 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS B 214 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS B 215 UNP A3SHZ8 EXPRESSION TAG SEQADV 3BVC HIS B 216 UNP A3SHZ8 EXPRESSION TAG SEQRES 1 A 212 MET SER LEU SER LEU PHE VAL THR ARG LEU TYR HIS ALA SEQRES 2 A 212 PRO LEU SER ASP HIS GLY PRO ALA ILE ASP ALA GLU GLU SEQRES 3 A 212 MET GLU SER SER CYS TYR ALA ILE ALA GLU ASP ASP GLU SEQRES 4 A 212 ALA GLY GLN GLY TRP CYS GLU GLU ASN GLY TYR PRO GLY SEQRES 5 A 212 TYR THR SER TYR ALA SER LEU THR ASP LEU PRO TRP ARG SEQRES 6 A 212 PHE PRO ILE PHE ALA ASP LEU VAL LYS SER LEU ASP ALA SEQRES 7 A 212 HIS VAL ALA ALA PHE ALA GLU ASP LEU GLU PHE ASP LEU SEQRES 8 A 212 ASP GLY ARG ALA LEU GLU LEU GLU ASP LEU TRP ILE ASN SEQRES 9 A 212 ILE LEU PRO GLU GLY GLY SER HIS ALA SER HIS ILE HIS SEQRES 10 A 212 PRO HIS SER VAL ILE SER GLY THR THR TYR VAL SER MET SEQRES 11 A 212 PRO GLY GLY THR SER ALA LEU LYS LEU GLU ASP PRO ARG SEQRES 12 A 212 HIS ALA MET MET MET ALA ALA PRO ALA ARG ARG LYS THR SEQRES 13 A 212 ALA ARG ASP GLU LEU ARG GLN PHE ILE TYR VAL THR PRO SEQRES 14 A 212 ALA VAL GLY ASP VAL LEU LEU TRP GLU SER TRP LEU ARG SEQRES 15 A 212 HIS GLU VAL PRO MET ASN MET SER GLU ASP ASP ARG ILE SEQRES 16 A 212 SER VAL SER PHE ASN TYR ARG TRP ALA GLU GLY HIS HIS SEQRES 17 A 212 HIS HIS HIS HIS SEQRES 1 B 212 MET SER LEU SER LEU PHE VAL THR ARG LEU TYR HIS ALA SEQRES 2 B 212 PRO LEU SER ASP HIS GLY PRO ALA ILE ASP ALA GLU GLU SEQRES 3 B 212 MET GLU SER SER CYS TYR ALA ILE ALA GLU ASP ASP GLU SEQRES 4 B 212 ALA GLY GLN GLY TRP CYS GLU GLU ASN GLY TYR PRO GLY SEQRES 5 B 212 TYR THR SER TYR ALA SER LEU THR ASP LEU PRO TRP ARG SEQRES 6 B 212 PHE PRO ILE PHE ALA ASP LEU VAL LYS SER LEU ASP ALA SEQRES 7 B 212 HIS VAL ALA ALA PHE ALA GLU ASP LEU GLU PHE ASP LEU SEQRES 8 B 212 ASP GLY ARG ALA LEU GLU LEU GLU ASP LEU TRP ILE ASN SEQRES 9 B 212 ILE LEU PRO GLU GLY GLY SER HIS ALA SER HIS ILE HIS SEQRES 10 B 212 PRO HIS SER VAL ILE SER GLY THR THR TYR VAL SER MET SEQRES 11 B 212 PRO GLY GLY THR SER ALA LEU LYS LEU GLU ASP PRO ARG SEQRES 12 B 212 HIS ALA MET MET MET ALA ALA PRO ALA ARG ARG LYS THR SEQRES 13 B 212 ALA ARG ASP GLU LEU ARG GLN PHE ILE TYR VAL THR PRO SEQRES 14 B 212 ALA VAL GLY ASP VAL LEU LEU TRP GLU SER TRP LEU ARG SEQRES 15 B 212 HIS GLU VAL PRO MET ASN MET SER GLU ASP ASP ARG ILE SEQRES 16 B 212 SER VAL SER PHE ASN TYR ARG TRP ALA GLU GLY HIS HIS SEQRES 17 B 212 HIS HIS HIS HIS HET CA A 301 1 HET CA A 302 1 HET NI A 304 1 HET CA A 306 1 HET CA B 303 1 HET NI B 305 1 HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION FORMUL 3 CA 4(CA 2+) FORMUL 5 NI 2(NI 2+) FORMUL 9 HOH *4(H2 O) HELIX 1 1 SER A 20 HIS A 22 5 3 HELIX 2 2 ASP A 27 GLU A 40 1 14 HELIX 3 3 ASP A 42 GLY A 53 1 12 HELIX 4 4 ASP A 65 PHE A 70 1 6 HELIX 5 5 PHE A 70 GLU A 92 1 23 HELIX 6 6 ARG A 147 MET A 152 5 6 HELIX 7 7 ARG A 162 ARG A 166 5 5 HELIX 8 8 SER B 20 HIS B 22 5 3 HELIX 9 9 ASP B 27 GLU B 40 1 14 HELIX 10 10 ASP B 42 GLY B 53 1 12 HELIX 11 11 ASP B 65 PHE B 70 1 6 HELIX 12 12 PHE B 70 LEU B 91 1 22 SHEET 1 A 6 TYR A 15 PRO A 18 0 SHEET 2 A 6 ASP A 177 GLU A 182 -1 O LEU A 180 N TYR A 15 SHEET 3 A 6 ILE A 126 TYR A 131 -1 N SER A 127 O TRP A 181 SHEET 4 A 6 ARG A 198 TRP A 207 -1 O TYR A 205 N ILE A 126 SHEET 5 A 6 LEU A 100 LEU A 110 -1 N LEU A 110 O ARG A 198 SHEET 6 A 6 TYR A 57 THR A 58 -1 N TYR A 57 O ILE A 109 SHEET 1 B 4 HIS A 116 HIS A 119 0 SHEET 2 B 4 ARG A 186 VAL A 189 -1 O VAL A 189 N HIS A 116 SHEET 3 B 4 LEU A 141 GLU A 144 -1 N LYS A 142 O GLU A 188 SHEET 4 B 4 PHE A 168 VAL A 171 -1 O ILE A 169 N LEU A 143 SHEET 1 C 6 TYR B 15 PRO B 18 0 SHEET 2 C 6 ASP B 177 GLU B 182 -1 O VAL B 178 N ALA B 17 SHEET 3 C 6 ILE B 126 SER B 133 -1 N SER B 127 O TRP B 181 SHEET 4 C 6 ARG B 198 ARG B 206 -1 O TYR B 205 N ILE B 126 SHEET 5 C 6 GLU B 101 LEU B 110 -1 N GLU B 103 O ASN B 204 SHEET 6 C 6 TYR B 57 THR B 58 -1 N TYR B 57 O ILE B 109 SHEET 1 D 4 HIS B 116 HIS B 119 0 SHEET 2 D 4 ARG B 186 VAL B 189 -1 O VAL B 189 N HIS B 116 SHEET 3 D 4 LEU B 141 GLU B 144 -1 N LYS B 142 O GLU B 188 SHEET 4 D 4 PHE B 168 VAL B 171 -1 O ILE B 169 N LEU B 143 LINK OD2 ASP A 27 CA CA A 301 1555 1555 2.72 LINK OE1 GLU A 112 CA CA A 302 1555 1555 2.67 LINK NE2 HIS A 119 NI NI A 304 1555 1555 2.52 LINK NE2 HIS A 121 NI NI A 304 1555 1555 2.42 LINK NE2 HIS A 187 NI NI A 304 1555 1555 2.36 LINK OE1 GLU A 195 CA CA A 302 1555 1555 2.64 LINK OD2 ASP B 94 CA CA B 303 1555 1555 2.95 LINK NE2 HIS B 119 NI NI B 305 1555 1555 2.40 LINK NE2 HIS B 121 NI NI B 305 1555 1555 2.38 LINK NE2 HIS B 187 NI NI B 305 1555 1555 2.33 SITE 1 AC1 2 ASP A 27 GLU A 29 SITE 1 AC2 4 GLU A 112 GLU A 195 GLU B 112 GLU B 195 SITE 1 AC3 3 HIS A 119 HIS A 121 HIS A 187 SITE 1 AC4 1 GLU A 32 SITE 1 AC5 1 ASP B 94 SITE 1 AC6 3 HIS B 119 HIS B 121 HIS B 187 CRYST1 96.405 101.973 76.506 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013071 0.00000