HEADER RNA BINDING PROTEIN 07-JAN-08 3BW1 TITLE CRYSTAL STRUCTURE OF HOMOMERIC YEAST LSM3 EXHIBITING NOVEL OCTAMERIC TITLE 2 RING ORGANISATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SMX4 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SMX4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCSIII KEYWDS RNA-BINDING PROTEIN, SM-LIKE PROTEIN, SM PROTEIN, RING, HOMOMERIC, KEYWDS 2 OCTAMER, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, RIBONUCLEOPROTEIN, KEYWDS 3 RRNA PROCESSING, TRNA PROCESSING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NAIDOO,S.J.HARROP,P.M.G.CURMI,B.C.MABBUTT REVDAT 6 01-NOV-23 3BW1 1 REMARK REVDAT 5 25-DEC-19 3BW1 1 REMARK SEQADV REVDAT 4 13-JUL-11 3BW1 1 VERSN REVDAT 3 24-FEB-09 3BW1 1 VERSN REVDAT 2 22-APR-08 3BW1 1 JRNL REVDAT 1 25-MAR-08 3BW1 0 JRNL AUTH N.NAIDOO,S.J.HARROP,M.SOBTI,P.A.HAYNES,B.R.SZYMCZYNA, JRNL AUTH 2 J.R.WILLIAMSON,P.M.G.CURMI,B.C.MABBUTT JRNL TITL CRYSTAL STRUCTURE OF LSM3 OCTAMER FROM SACCHAROMYCES JRNL TITL 2 CEREVISIAE: IMPLICATIONS FOR LSM RING ORGANISATION AND JRNL TITL 3 RECRUITMENT JRNL REF J.MOL.BIOL. V. 377 1357 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18329667 JRNL DOI 10.1016/J.JMB.2008.01.007 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 8603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 429 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3930 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 71.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1424 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1931 ; 2.125 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 7.503 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;34.878 ;24.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 257 ;20.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.688 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1023 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 508 ; 0.254 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 958 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 33 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.308 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 879 ; 0.798 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1400 ; 1.392 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 585 ; 2.276 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 530 ; 3.416 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 80 1 REMARK 3 1 B 1 B 80 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 626 ; 0.07 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 626 ; 0.13 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5992 23.2524 19.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: -0.2593 REMARK 3 T33: -0.0551 T12: -0.0244 REMARK 3 T13: 0.0730 T23: -0.1970 REMARK 3 L TENSOR REMARK 3 L11: 12.4283 L22: 2.2544 REMARK 3 L33: 7.2372 L12: 0.0207 REMARK 3 L13: 5.1127 L23: -0.4405 REMARK 3 S TENSOR REMARK 3 S11: 0.3462 S12: -0.8800 S13: 0.2747 REMARK 3 S21: 0.6813 S22: 0.0188 S23: -0.0542 REMARK 3 S31: -0.0326 S32: -0.1213 S33: -0.3650 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0043 16.0755 19.8517 REMARK 3 T TENSOR REMARK 3 T11: -0.0952 T22: -0.0972 REMARK 3 T33: -0.0607 T12: -0.1776 REMARK 3 T13: -0.0934 T23: -0.1629 REMARK 3 L TENSOR REMARK 3 L11: 6.8008 L22: 7.5471 REMARK 3 L33: 9.8014 L12: -4.1128 REMARK 3 L13: 2.1944 L23: -2.8226 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.8121 S13: 0.0591 REMARK 3 S21: 0.9635 S22: 0.3494 S23: -0.3299 REMARK 3 S31: -0.0889 S32: 0.0165 S33: -0.4000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 36.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I81 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75M LITHIUM SULFATE, 8% (V/V) 2 REMARK 280 -METHYL-2,4-PENTANEDIOL, 0.1M IMIDAZOLE (PH 7.0), 10MM URIDINE-5- REMARK 280 MONOPHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.96550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 70.96550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 70.96550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 70.96550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 70.96550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 70.96550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 70.96550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 41.87150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.96550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -296.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLU A 81 REMARK 465 ASP A 82 REMARK 465 ASP A 83 REMARK 465 ASP A 84 REMARK 465 GLY A 85 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLU B 81 REMARK 465 ASP B 82 REMARK 465 ASP B 83 REMARK 465 ASP B 84 REMARK 465 GLY B 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -1 171.24 -52.72 REMARK 500 ASN A 53 -131.29 51.43 REMARK 500 ARG B 21 136.75 -36.27 REMARK 500 ASN B 53 -131.65 49.36 REMARK 500 LEU B 56 75.19 -67.38 REMARK 500 SER B 57 -168.89 -74.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 91 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 91 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I81 RELATED DB: PDB REMARK 900 RELATED ID: 1D3B RELATED DB: PDB REMARK 900 RELATED ID: 1B34 RELATED DB: PDB REMARK 900 RELATED ID: 1N9S RELATED DB: PDB REMARK 900 RELATED ID: 1N9R RELATED DB: PDB DBREF 3BW1 A 1 89 UNP P57743 LSM3_YEAST 1 89 DBREF 3BW1 B 1 89 UNP P57743 LSM3_YEAST 1 89 SEQADV 3BW1 MET A -7 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS A -6 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS A -5 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS A -4 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS A -3 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS A -2 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS A -1 UNP P57743 EXPRESSION TAG SEQADV 3BW1 MET B -7 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS B -6 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS B -5 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS B -4 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS B -3 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS B -2 UNP P57743 EXPRESSION TAG SEQADV 3BW1 HIS B -1 UNP P57743 EXPRESSION TAG SEQRES 1 A 96 MET HIS HIS HIS HIS HIS HIS MET GLU THR PRO LEU ASP SEQRES 2 A 96 LEU LEU LYS LEU ASN LEU ASP GLU ARG VAL TYR ILE LYS SEQRES 3 A 96 LEU ARG GLY ALA ARG THR LEU VAL GLY THR LEU GLN ALA SEQRES 4 A 96 PHE ASP SER HIS CYS ASN ILE VAL LEU SER ASP ALA VAL SEQRES 5 A 96 GLU THR ILE TYR GLN LEU ASN ASN GLU GLU LEU SER GLU SEQRES 6 A 96 SER GLU ARG ARG CYS GLU MET VAL PHE ILE ARG GLY ASP SEQRES 7 A 96 THR VAL THR LEU ILE SER THR PRO SER GLU ASP ASP ASP SEQRES 8 A 96 GLY ALA VAL GLU ILE SEQRES 1 B 96 MET HIS HIS HIS HIS HIS HIS MET GLU THR PRO LEU ASP SEQRES 2 B 96 LEU LEU LYS LEU ASN LEU ASP GLU ARG VAL TYR ILE LYS SEQRES 3 B 96 LEU ARG GLY ALA ARG THR LEU VAL GLY THR LEU GLN ALA SEQRES 4 B 96 PHE ASP SER HIS CYS ASN ILE VAL LEU SER ASP ALA VAL SEQRES 5 B 96 GLU THR ILE TYR GLN LEU ASN ASN GLU GLU LEU SER GLU SEQRES 6 B 96 SER GLU ARG ARG CYS GLU MET VAL PHE ILE ARG GLY ASP SEQRES 7 B 96 THR VAL THR LEU ILE SER THR PRO SER GLU ASP ASP ASP SEQRES 8 B 96 GLY ALA VAL GLU ILE HET MPD A 90 8 HET MPD A 91 8 HET MPD A 92 8 HET SO4 B 90 5 HET MPD B 91 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM SO4 SULFATE ION FORMUL 3 MPD 4(C6 H14 O2) FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *2(H2 O) HELIX 1 1 THR A 3 LYS A 9 1 7 HELIX 2 2 LEU A 10 LEU A 12 5 3 HELIX 3 3 THR B 3 LEU B 10 1 8 HELIX 4 4 ARG B 69 ASP B 71 5 3 SHEET 1 A10 VAL A 73 SER A 77 0 SHEET 2 A10 ARG A 15 LEU A 20 -1 N TYR A 17 O SER A 77 SHEET 3 A10 THR A 25 PHE A 33 -1 O LEU A 26 N ILE A 18 SHEET 4 A10 ILE A 39 TYR A 49 -1 O SER A 42 N THR A 29 SHEET 5 A10 GLU A 58 ILE A 68 -1 O ILE A 68 N ILE A 39 SHEET 6 A10 VAL B 73 SER B 77 -1 O ILE B 76 N PHE A 67 SHEET 7 A10 ARG B 15 LEU B 20 -1 N TYR B 17 O SER B 77 SHEET 8 A10 THR B 25 PHE B 33 -1 O LEU B 26 N ILE B 18 SHEET 9 A10 ILE B 39 TYR B 49 -1 O SER B 42 N THR B 29 SHEET 10 A10 GLU B 58 ILE B 68 -1 O ILE B 68 N ILE B 39 SITE 1 AC1 4 ALA A 32 PHE A 33 HIS B -1 GLU B 2 SITE 1 AC2 3 GLU A 2 ALA B 32 PHE B 33 SITE 1 AC3 2 LEU A 5 LYS A 9 CRYST1 83.743 83.743 141.931 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007046 0.00000