HEADER TRANSCRIPTION REGULATOR 09-JAN-08 3BWG TITLE THE CRYSTAL STRUCTURE OF POSSIBLE TRANSCRIPTIONAL REGULATOR YYDK FROM TITLE 2 BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YYDK; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YYDK, BSU40130; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC85486, YYDK, TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION KEYWDS 4 REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 30-OCT-24 3BWG 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3BWG 1 VERSN REVDAT 2 24-FEB-09 3BWG 1 VERSN REVDAT 1 22-JAN-08 3BWG 0 JRNL AUTH K.TAN,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF POSSIBLE TRANSCRIPTIONAL REGULATOR JRNL TITL 2 YYDK FROM BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 39422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5639 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7589 ; 1.677 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 7.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;37.763 ;25.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1028 ;18.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.046 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4220 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2434 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3785 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 311 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3465 ; 1.383 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5412 ; 2.149 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2476 ; 1.454 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2176 ; 1.999 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8300 8.8320 13.8660 REMARK 3 T TENSOR REMARK 3 T11: -0.0296 T22: 0.3735 REMARK 3 T33: 0.1005 T12: -0.1140 REMARK 3 T13: -0.0963 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 9.9051 L22: 1.2488 REMARK 3 L33: 4.6965 L12: -2.1249 REMARK 3 L13: 6.3529 L23: -1.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -1.0995 S13: -0.4935 REMARK 3 S21: -0.0054 S22: 0.0990 S23: 0.2836 REMARK 3 S31: 0.2000 S32: -1.3937 S33: -0.1277 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2380 1.8800 37.4860 REMARK 3 T TENSOR REMARK 3 T11: -0.1833 T22: -0.2185 REMARK 3 T33: -0.0194 T12: -0.0532 REMARK 3 T13: -0.1493 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.3631 L22: 1.1344 REMARK 3 L33: 2.1772 L12: 0.2221 REMARK 3 L13: -0.9052 L23: -0.7097 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.0805 S13: -0.1587 REMARK 3 S21: -0.0975 S22: -0.0866 S23: -0.0431 REMARK 3 S31: 0.2849 S32: 0.0235 S33: 0.0979 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7120 30.3330 31.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: -0.0933 REMARK 3 T33: 0.1743 T12: -0.0250 REMARK 3 T13: -0.1282 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 4.8210 L22: 7.5330 REMARK 3 L33: 0.2465 L12: -4.8778 REMARK 3 L13: -0.6102 L23: 1.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.2539 S12: 0.2555 S13: 0.3674 REMARK 3 S21: -0.2668 S22: -0.2940 S23: 0.0704 REMARK 3 S31: -0.2954 S32: -0.0873 S33: 0.0401 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1900 14.8140 11.5960 REMARK 3 T TENSOR REMARK 3 T11: -0.1770 T22: -0.1848 REMARK 3 T33: 0.0259 T12: -0.0131 REMARK 3 T13: -0.0788 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.1064 L22: 0.7166 REMARK 3 L33: 2.4523 L12: 0.2604 REMARK 3 L13: -0.1683 L23: -0.6402 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0080 S13: 0.0209 REMARK 3 S21: -0.0406 S22: -0.0747 S23: -0.2123 REMARK 3 S31: -0.0695 S32: 0.1553 S33: 0.0555 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 79 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2840 37.5310 73.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.3159 T22: 0.1164 REMARK 3 T33: 0.4936 T12: 0.0577 REMARK 3 T13: -0.1988 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 1.1777 L22: 13.4925 REMARK 3 L33: 3.7153 L12: 3.6998 REMARK 3 L13: 0.8329 L23: 5.0339 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: -0.0822 S13: 0.0677 REMARK 3 S21: -1.4379 S22: 0.1222 S23: 0.0399 REMARK 3 S31: -1.1416 S32: 0.0676 S33: -0.0577 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 87 C 233 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6860 16.2990 52.9430 REMARK 3 T TENSOR REMARK 3 T11: -0.1941 T22: -0.1462 REMARK 3 T33: -0.0430 T12: -0.0392 REMARK 3 T13: -0.1226 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.8189 L22: 1.5167 REMARK 3 L33: 1.8952 L12: 0.2413 REMARK 3 L13: -1.0571 L23: -0.7490 REMARK 3 S TENSOR REMARK 3 S11: -0.2161 S12: -0.0087 S13: -0.0926 REMARK 3 S21: 0.0847 S22: 0.1025 S23: -0.1207 REMARK 3 S31: 0.0682 S32: 0.1778 S33: 0.1136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 43.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM ACETATE, 0.1M BIS-TRIS, REMARK 280 17% PEG 10000, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.99700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.14200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.99700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.14200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.33164 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 130.38453 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 TYR A 4 REMARK 465 PHE A 83 REMARK 465 LYS A 84 REMARK 465 LYS A 85 REMARK 465 ASP A 86 REMARK 465 LEU A 87 REMARK 465 GLU A 88 REMARK 465 PHE A 234 REMARK 465 LEU A 235 REMARK 465 LEU A 236 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLY B 82 REMARK 465 PHE B 83 REMARK 465 LYS B 84 REMARK 465 LYS B 85 REMARK 465 SER B 233 REMARK 465 PHE B 234 REMARK 465 LEU B 235 REMARK 465 LEU B 236 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 LEU C 2 REMARK 465 ASN C 80 REMARK 465 GLN C 81 REMARK 465 GLY C 82 REMARK 465 PHE C 83 REMARK 465 LYS C 84 REMARK 465 LYS C 85 REMARK 465 ASP C 86 REMARK 465 PHE C 234 REMARK 465 LEU C 235 REMARK 465 LEU C 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 -55.41 -28.90 REMARK 500 LYS A 68 114.84 -160.62 REMARK 500 ASN A 80 36.23 -84.08 REMARK 500 HIS A 156 -161.20 -125.77 REMARK 500 LEU B 2 -169.54 -115.72 REMARK 500 ARG B 71 155.08 73.30 REMARK 500 ASN B 80 62.67 62.70 REMARK 500 LEU B 87 -72.04 -29.68 REMARK 500 HIS B 156 -133.81 -116.82 REMARK 500 VAL C 28 151.60 -39.35 REMARK 500 GLU C 37 73.47 56.42 REMARK 500 ARG C 60 105.79 -56.65 REMARK 500 SER C 62 -68.43 -96.88 REMARK 500 LYS C 70 -168.92 -100.97 REMARK 500 ARG C 71 143.58 74.50 REMARK 500 GLU C 88 -77.00 -104.35 REMARK 500 HIS C 156 -152.88 -123.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 240 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85486 RELATED DB: TARGETDB DBREF 3BWG A 1 236 UNP Q45591 YYDK_BACSU 1 236 DBREF 3BWG B 1 236 UNP Q45591 YYDK_BACSU 1 236 DBREF 3BWG C 1 236 UNP Q45591 YYDK_BACSU 1 236 SEQADV 3BWG SER A -2 UNP Q45591 EXPRESSION TAG SEQADV 3BWG ASN A -1 UNP Q45591 EXPRESSION TAG SEQADV 3BWG ALA A 0 UNP Q45591 EXPRESSION TAG SEQADV 3BWG SER B -2 UNP Q45591 EXPRESSION TAG SEQADV 3BWG ASN B -1 UNP Q45591 EXPRESSION TAG SEQADV 3BWG ALA B 0 UNP Q45591 EXPRESSION TAG SEQADV 3BWG SER C -2 UNP Q45591 EXPRESSION TAG SEQADV 3BWG ASN C -1 UNP Q45591 EXPRESSION TAG SEQADV 3BWG ALA C 0 UNP Q45591 EXPRESSION TAG SEQRES 1 A 239 SER ASN ALA MSE LEU LYS TYR GLN GLN ILE ALA THR GLU SEQRES 2 A 239 ILE GLU THR TYR ILE GLU GLU HIS GLN LEU GLN GLN GLY SEQRES 3 A 239 ASP LYS LEU PRO VAL LEU GLU THR LEU MSE ALA GLN PHE SEQRES 4 A 239 GLU VAL SER LYS SER THR ILE THR LYS SER LEU GLU LEU SEQRES 5 A 239 LEU GLU GLN LYS GLY ALA ILE PHE GLN VAL ARG GLY SER SEQRES 6 A 239 GLY ILE PHE VAL ARG LYS HIS LYS ARG LYS GLY TYR ILE SEQRES 7 A 239 SER LEU LEU SER ASN GLN GLY PHE LYS LYS ASP LEU GLU SEQRES 8 A 239 ASP PHE ASN VAL THR SER LYS VAL ILE GLU LEU ASP VAL SEQRES 9 A 239 ARG LYS PRO THR PRO GLU ALA ALA GLU ASN LEU ASN ILE SEQRES 10 A 239 GLY MSE ASP GLU ASP ILE TYR TYR VAL LYS ARG VAL ARG SEQRES 11 A 239 TYR ILE ASN GLY GLN THR LEU CYS TYR GLU GLU SER TYR SEQRES 12 A 239 TYR THR LYS SER ILE VAL THR TYR LEU ASN ASN GLU ILE SEQRES 13 A 239 VAL SER HIS SER ILE PHE HIS TYR ILE ARG GLU GLY LEU SEQRES 14 A 239 GLY LEU LYS ILE GLY PHE SER ASP LEU PHE LEU HIS VAL SEQRES 15 A 239 GLY GLN LEU ASN GLU GLU GLU ALA GLU TYR LEU GLY LEU SEQRES 16 A 239 GLU ALA GLY LEU PRO LYS LEU TYR ILE GLU SER ILE PHE SEQRES 17 A 239 HIS LEU THR ASN GLY GLN PRO PHE ASP TYR SER LYS ILE SEQRES 18 A 239 SER TYR ASN TYR GLU GLN SER GLN PHE VAL VAL GLN ALA SEQRES 19 A 239 ASN SER PHE LEU LEU SEQRES 1 B 239 SER ASN ALA MSE LEU LYS TYR GLN GLN ILE ALA THR GLU SEQRES 2 B 239 ILE GLU THR TYR ILE GLU GLU HIS GLN LEU GLN GLN GLY SEQRES 3 B 239 ASP LYS LEU PRO VAL LEU GLU THR LEU MSE ALA GLN PHE SEQRES 4 B 239 GLU VAL SER LYS SER THR ILE THR LYS SER LEU GLU LEU SEQRES 5 B 239 LEU GLU GLN LYS GLY ALA ILE PHE GLN VAL ARG GLY SER SEQRES 6 B 239 GLY ILE PHE VAL ARG LYS HIS LYS ARG LYS GLY TYR ILE SEQRES 7 B 239 SER LEU LEU SER ASN GLN GLY PHE LYS LYS ASP LEU GLU SEQRES 8 B 239 ASP PHE ASN VAL THR SER LYS VAL ILE GLU LEU ASP VAL SEQRES 9 B 239 ARG LYS PRO THR PRO GLU ALA ALA GLU ASN LEU ASN ILE SEQRES 10 B 239 GLY MSE ASP GLU ASP ILE TYR TYR VAL LYS ARG VAL ARG SEQRES 11 B 239 TYR ILE ASN GLY GLN THR LEU CYS TYR GLU GLU SER TYR SEQRES 12 B 239 TYR THR LYS SER ILE VAL THR TYR LEU ASN ASN GLU ILE SEQRES 13 B 239 VAL SER HIS SER ILE PHE HIS TYR ILE ARG GLU GLY LEU SEQRES 14 B 239 GLY LEU LYS ILE GLY PHE SER ASP LEU PHE LEU HIS VAL SEQRES 15 B 239 GLY GLN LEU ASN GLU GLU GLU ALA GLU TYR LEU GLY LEU SEQRES 16 B 239 GLU ALA GLY LEU PRO LYS LEU TYR ILE GLU SER ILE PHE SEQRES 17 B 239 HIS LEU THR ASN GLY GLN PRO PHE ASP TYR SER LYS ILE SEQRES 18 B 239 SER TYR ASN TYR GLU GLN SER GLN PHE VAL VAL GLN ALA SEQRES 19 B 239 ASN SER PHE LEU LEU SEQRES 1 C 239 SER ASN ALA MSE LEU LYS TYR GLN GLN ILE ALA THR GLU SEQRES 2 C 239 ILE GLU THR TYR ILE GLU GLU HIS GLN LEU GLN GLN GLY SEQRES 3 C 239 ASP LYS LEU PRO VAL LEU GLU THR LEU MSE ALA GLN PHE SEQRES 4 C 239 GLU VAL SER LYS SER THR ILE THR LYS SER LEU GLU LEU SEQRES 5 C 239 LEU GLU GLN LYS GLY ALA ILE PHE GLN VAL ARG GLY SER SEQRES 6 C 239 GLY ILE PHE VAL ARG LYS HIS LYS ARG LYS GLY TYR ILE SEQRES 7 C 239 SER LEU LEU SER ASN GLN GLY PHE LYS LYS ASP LEU GLU SEQRES 8 C 239 ASP PHE ASN VAL THR SER LYS VAL ILE GLU LEU ASP VAL SEQRES 9 C 239 ARG LYS PRO THR PRO GLU ALA ALA GLU ASN LEU ASN ILE SEQRES 10 C 239 GLY MSE ASP GLU ASP ILE TYR TYR VAL LYS ARG VAL ARG SEQRES 11 C 239 TYR ILE ASN GLY GLN THR LEU CYS TYR GLU GLU SER TYR SEQRES 12 C 239 TYR THR LYS SER ILE VAL THR TYR LEU ASN ASN GLU ILE SEQRES 13 C 239 VAL SER HIS SER ILE PHE HIS TYR ILE ARG GLU GLY LEU SEQRES 14 C 239 GLY LEU LYS ILE GLY PHE SER ASP LEU PHE LEU HIS VAL SEQRES 15 C 239 GLY GLN LEU ASN GLU GLU GLU ALA GLU TYR LEU GLY LEU SEQRES 16 C 239 GLU ALA GLY LEU PRO LYS LEU TYR ILE GLU SER ILE PHE SEQRES 17 C 239 HIS LEU THR ASN GLY GLN PRO PHE ASP TYR SER LYS ILE SEQRES 18 C 239 SER TYR ASN TYR GLU GLN SER GLN PHE VAL VAL GLN ALA SEQRES 19 C 239 ASN SER PHE LEU LEU MODRES 3BWG MSE A 33 MET SELENOMETHIONINE MODRES 3BWG MSE A 116 MET SELENOMETHIONINE MODRES 3BWG MSE B 1 MET SELENOMETHIONINE MODRES 3BWG MSE B 33 MET SELENOMETHIONINE MODRES 3BWG MSE B 116 MET SELENOMETHIONINE MODRES 3BWG MSE C 33 MET SELENOMETHIONINE MODRES 3BWG MSE C 116 MET SELENOMETHIONINE HET MSE A 33 8 HET MSE A 116 8 HET MSE B 1 8 HET MSE B 33 8 HET MSE B 116 8 HET MSE C 33 8 HET MSE C 116 8 HET EDO A 237 4 HET EDO A 238 4 HET EDO A 239 4 HET EDO A 240 4 HET EDO B 237 4 HET EDO B 238 4 HET EDO C 237 4 HET EDO C 238 4 HET EDO C 239 4 HET EDO C 240 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 4 EDO 10(C2 H6 O2) FORMUL 14 HOH *288(H2 O) HELIX 1 1 GLN A 5 HIS A 18 1 14 HELIX 2 2 VAL A 28 PHE A 36 1 9 HELIX 3 3 SER A 39 LYS A 53 1 15 HELIX 4 4 LEU A 78 GLY A 82 5 5 HELIX 5 5 THR A 105 ASN A 113 1 9 HELIX 6 6 ASN A 150 SER A 155 1 6 HELIX 7 7 SER A 157 GLY A 165 1 9 HELIX 8 8 ASN A 183 GLY A 191 1 9 HELIX 9 9 LEU B 2 HIS B 18 1 17 HELIX 10 10 VAL B 28 GLU B 37 1 10 HELIX 11 11 SER B 39 LYS B 53 1 15 HELIX 12 12 ASP B 86 PHE B 90 5 5 HELIX 13 13 THR B 105 LEU B 112 1 8 HELIX 14 14 ASN B 150 SER B 155 1 6 HELIX 15 15 SER B 157 GLY B 165 1 9 HELIX 16 16 ASN B 183 GLY B 191 1 9 HELIX 17 17 TYR C 4 HIS C 18 1 15 HELIX 18 18 VAL C 28 GLU C 37 1 10 HELIX 19 19 SER C 39 LYS C 53 1 15 HELIX 20 20 THR C 105 ASN C 113 1 9 HELIX 21 21 ASN C 150 SER C 155 1 6 HELIX 22 22 SER C 157 GLY C 165 1 9 HELIX 23 23 ASN C 183 GLY C 191 1 9 SHEET 1 A 2 ILE A 56 VAL A 59 0 SHEET 2 A 2 GLY A 63 VAL A 66 -1 O PHE A 65 N PHE A 57 SHEET 1 B 8 ILE A 75 SER A 76 0 SHEET 2 B 8 PHE A 227 ALA A 231 1 O VAL A 228 N ILE A 75 SHEET 3 B 8 ILE B 170 GLN B 181 -1 O LEU B 175 N VAL A 229 SHEET 4 B 8 PRO B 197 LEU B 207 -1 O HIS B 206 N GLY B 171 SHEET 5 B 8 PRO B 212 ASN B 221 -1 O ILE B 218 N ILE B 201 SHEET 6 B 8 GLN B 132 THR B 142 -1 N GLU B 138 O LYS B 217 SHEET 7 B 8 ILE B 120 ILE B 129 -1 N ARG B 127 O LEU B 134 SHEET 8 B 8 VAL B 92 ARG B 102 -1 N THR B 93 O TYR B 128 SHEET 1 C 8 VAL A 92 ARG A 102 0 SHEET 2 C 8 ILE A 120 ILE A 129 -1 O TYR A 128 N THR A 93 SHEET 3 C 8 GLN A 132 THR A 142 -1 O LEU A 134 N ARG A 127 SHEET 4 C 8 PRO A 212 TYR A 220 -1 O LYS A 217 N GLU A 138 SHEET 5 C 8 PRO A 197 LEU A 207 -1 N ILE A 201 O ILE A 218 SHEET 6 C 8 ILE A 170 GLN A 181 -1 N GLY A 171 O HIS A 206 SHEET 7 C 8 PHE B 227 ALA B 231 -1 O ALA B 231 N SER A 173 SHEET 8 C 8 ILE B 75 SER B 76 1 N ILE B 75 O VAL B 228 SHEET 1 D 2 ILE B 56 VAL B 59 0 SHEET 2 D 2 GLY B 63 VAL B 66 -1 O PHE B 65 N PHE B 57 SHEET 1 E 2 ILE C 56 VAL C 59 0 SHEET 2 E 2 GLY C 63 VAL C 66 -1 O PHE C 65 N PHE C 57 SHEET 1 F 2 ILE C 75 SER C 76 0 SHEET 2 F 2 PHE C 227 VAL C 228 1 O VAL C 228 N ILE C 75 SHEET 1 G 6 VAL C 92 ARG C 102 0 SHEET 2 G 6 ILE C 120 ILE C 129 -1 O ILE C 120 N ARG C 102 SHEET 3 G 6 GLN C 132 THR C 142 -1 O LEU C 134 N ARG C 127 SHEET 4 G 6 PRO C 212 TYR C 220 -1 O LYS C 217 N GLU C 138 SHEET 5 G 6 PRO C 197 LEU C 207 -1 N ILE C 201 O ILE C 218 SHEET 6 G 6 ILE C 170 GLN C 181 -1 N HIS C 178 O TYR C 200 LINK C LEU A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N ALA A 34 1555 1555 1.33 LINK C GLY A 115 N MSE A 116 1555 1555 1.33 LINK C MSE A 116 N ASP A 117 1555 1555 1.33 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C LEU B 32 N MSE B 33 1555 1555 1.34 LINK C MSE B 33 N ALA B 34 1555 1555 1.33 LINK C GLY B 115 N MSE B 116 1555 1555 1.33 LINK C MSE B 116 N ASP B 117 1555 1555 1.33 LINK C LEU C 32 N MSE C 33 1555 1555 1.33 LINK C MSE C 33 N ALA C 34 1555 1555 1.33 LINK C GLY C 115 N MSE C 116 1555 1555 1.33 LINK C MSE C 116 N ASP C 117 1555 1555 1.33 SITE 1 AC1 3 THR A 93 TYR A 128 GLU B 17 SITE 1 AC2 7 LYS A 198 LEU A 199 TYR A 220 TYR A 222 SITE 2 AC2 7 SER A 225 PHE A 227 VAL B 179 SITE 1 AC3 4 GLN A 21 GLN A 22 LYS A 68 LYS A 70 SITE 1 AC4 7 TYR A 136 GLU A 138 GLU A 186 TYR A 200 SITE 2 AC4 7 LYS A 217 SER A 219 HOH A 322 SITE 1 AC5 5 ARG B 71 LYS B 72 ALA C 109 ASN C 113 SITE 2 AC5 5 ILE C 114 SITE 1 AC6 6 TYR C 136 GLU C 138 GLU C 186 LYS C 217 SITE 2 AC6 6 SER C 219 HOH C 318 SITE 1 AC7 5 TYR B 136 GLU B 138 GLU B 186 LYS B 217 SITE 2 AC7 5 SER B 219 SITE 1 AC8 5 LEU C 112 ASN C 113 GLN C 211 PRO C 212 SITE 2 AC8 5 HOH C 260 SITE 1 AC9 8 VAL A 179 LYS B 198 LEU B 199 TYR B 220 SITE 2 AC9 8 TYR B 222 SER B 225 PHE B 227 HOH B 246 SITE 1 BC1 7 LYS C 198 LEU C 199 TYR C 220 ASN C 221 SITE 2 BC1 7 TYR C 222 SER C 225 HOH C 270 CRYST1 101.994 58.284 138.823 90.00 110.08 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009804 0.000000 0.003584 0.00000 SCALE2 0.000000 0.017157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007670 0.00000