HEADER HYDROLASE 15-JAN-08 3BYD TITLE CRYSTAL STRUCTURE OF BETA-LACTAMASE OXY-1-1 FROM KLEBSIELLA OXYTOCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE OXY-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 3 ORGANISM_TAXID: 571; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQESW-9 KEYWDS MULTI-DOMAIN PROTEINS (ALPHA AND BETA), ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-H.LIANG,S.W.WU,X.-D.SU REVDAT 5 01-NOV-23 3BYD 1 REMARK REVDAT 4 25-OCT-17 3BYD 1 REMARK REVDAT 3 07-NOV-12 3BYD 1 JRNL REVDAT 2 13-JUL-11 3BYD 1 VERSN REVDAT 1 20-JAN-09 3BYD 0 JRNL AUTH Y.-H.LIANG,R.GAO,X.-D.SU JRNL TITL STRUCTURAL INSIGHTS INTO THE BROADENED SUBSTRATE PROFILE OF JRNL TITL 2 THE EXTENDED-SPECTRUM BETA-LACTAMASE OXY-1-1 FROM KLEBSIELLA JRNL TITL 3 OXYTOCA JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1460 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 23090395 JRNL DOI 10.1107/S090744491203466X REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 21754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1120 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1997 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2710 ; 1.236 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 5.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;36.582 ;25.195 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;11.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1463 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 993 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1409 ; 0.293 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 185 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1343 ; 0.627 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2070 ; 0.923 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 751 ; 1.717 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 640 ; 2.514 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9550 68.8430 19.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: -0.1260 REMARK 3 T33: 0.0309 T12: 0.0196 REMARK 3 T13: -0.0426 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.5721 L22: 3.0439 REMARK 3 L33: 1.1648 L12: -0.6817 REMARK 3 L13: 0.4159 L23: -0.4760 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.0313 S13: 0.0400 REMARK 3 S21: -0.4333 S22: -0.1224 S23: 0.3104 REMARK 3 S31: -0.1153 S32: 0.0053 S33: 0.0572 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8980 64.2920 32.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: -0.0944 REMARK 3 T33: 0.0306 T12: -0.0134 REMARK 3 T13: 0.0013 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.4174 L22: 1.3055 REMARK 3 L33: 0.7497 L12: -0.0972 REMARK 3 L13: 0.1741 L23: 0.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0379 S13: 0.0054 REMARK 3 S21: -0.1125 S22: -0.0288 S23: 0.0020 REMARK 3 S31: -0.1149 S32: 0.0473 S33: 0.0339 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): -30.8340 66.0630 24.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: -0.1136 REMARK 3 T33: 0.0665 T12: 0.0391 REMARK 3 T13: -0.0641 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.9448 L22: 10.4048 REMARK 3 L33: 1.3035 L12: 0.2915 REMARK 3 L13: -0.2234 L23: 3.3860 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.0262 S13: 0.0659 REMARK 3 S21: -0.1019 S22: -0.0884 S23: 0.2788 REMARK 3 S31: -0.0507 S32: -0.1151 S33: 0.0707 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -37.7610 66.7120 21.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: -0.1731 REMARK 3 T33: 0.2297 T12: 0.0323 REMARK 3 T13: -0.1042 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 6.8301 L22: 13.7409 REMARK 3 L33: 26.8405 L12: 4.5604 REMARK 3 L13: 7.7573 L23: 15.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.0293 S13: -0.1508 REMARK 3 S21: -0.1189 S22: -0.4749 S23: 1.2903 REMARK 3 S31: 0.2589 S32: -0.5406 S33: 0.4362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0292 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.12900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1BZA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) PEG 4000, 0.1M SODIUM ACETATE REMARK 280 BUFFER, 0.2M AMMONIUM SULFATE, PH 4.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.27250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.28050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.71550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.28050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.27250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.71550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 TRP A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 ALA A 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 470 GLN A 222 CD OE1 NE2 REMARK 470 ASP A 272 OD2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 SER A 275 OG REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 LYS A 285 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 72 -139.35 51.44 REMARK 500 GLU A 92 51.38 -112.23 REMARK 500 VAL A 93 -70.05 -122.70 REMARK 500 SER A 223 -122.89 -100.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 305 DBREF 3BYD A 25 291 UNP P22391 BLO1_KLEOX 25 291 SEQRES 1 A 267 SER LEU TRP ALA SER ALA ASP ALA ILE GLN GLN LYS LEU SEQRES 2 A 267 ALA ASP LEU GLU LYS ARG SER GLY GLY ARG LEU GLY VAL SEQRES 3 A 267 ALA LEU ILE ASN THR ALA ASP ASP SER GLN THR LEU TYR SEQRES 4 A 267 ARG GLY ASP GLU ARG PHE ALA MET CYS SER THR GLY LYS SEQRES 5 A 267 VAL MET ALA ALA ALA ALA VAL LEU LYS GLN SER GLU SER SEQRES 6 A 267 ASN PRO GLU VAL VAL ASN LYS ARG LEU GLU ILE LYS LYS SEQRES 7 A 267 SER ASP LEU VAL VAL TRP SER PRO ILE THR GLU LYS HIS SEQRES 8 A 267 LEU GLN SER GLY MET THR LEU ALA GLU LEU SER ALA ALA SEQRES 9 A 267 ALA LEU GLN TYR SER ASP ASN THR ALA MET ASN LYS MET SEQRES 10 A 267 ILE SER TYR LEU GLY GLY PRO GLU LYS VAL THR ALA PHE SEQRES 11 A 267 ALA GLN SER ILE GLY ASP VAL THR PHE ARG LEU ASP ARG SEQRES 12 A 267 THR GLU PRO ALA LEU ASN SER ALA ILE PRO GLY ASP LYS SEQRES 13 A 267 ARG ASP THR THR THR PRO LEU ALA MET ALA GLU SER LEU SEQRES 14 A 267 ARG LYS LEU THR LEU GLY ASN ALA LEU GLY GLU GLN GLN SEQRES 15 A 267 ARG ALA GLN LEU VAL THR TRP LEU LYS GLY ASN THR THR SEQRES 16 A 267 GLY GLY GLN SER ILE ARG ALA GLY LEU PRO ALA SER TRP SEQRES 17 A 267 ALA VAL GLY ASP LYS THR GLY ALA GLY ASP TYR GLY THR SEQRES 18 A 267 THR ASN ASP ILE ALA VAL ILE TRP PRO GLU ASN HIS ALA SEQRES 19 A 267 PRO LEU VAL LEU VAL THR TYR PHE THR GLN PRO GLN GLN SEQRES 20 A 267 ASP ALA LYS SER ARG LYS GLU VAL LEU ALA ALA ALA ALA SEQRES 21 A 267 LYS ILE VAL THR GLU GLY LEU HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET ACT A 305 4 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *203(H2 O) HELIX 1 1 ASP A 31 GLY A 45 1 15 HELIX 2 2 CYS A 72 THR A 74 5 3 HELIX 3 3 GLY A 75 ASN A 90 1 16 HELIX 4 4 LYS A 101 LEU A 105 5 5 HELIX 5 5 ILE A 111 HIS A 115 5 5 HELIX 6 6 LEU A 122 TYR A 132 1 11 HELIX 7 7 ASP A 134 GLY A 146 1 13 HELIX 8 8 GLY A 147 ILE A 158 1 12 HELIX 9 9 PRO A 170 SER A 174 5 5 HELIX 10 10 THR A 185 LEU A 198 1 14 HELIX 11 11 GLY A 203 GLY A 216 1 14 HELIX 12 12 SER A 223 LEU A 228 5 6 HELIX 13 13 ARG A 276 GLU A 289 1 14 SHEET 1 A 5 GLN A 60 TYR A 63 0 SHEET 2 A 5 ARG A 47 ASN A 54 -1 N VAL A 50 O TYR A 63 SHEET 3 A 5 LEU A 260 THR A 267 -1 O VAL A 261 N ILE A 53 SHEET 4 A 5 THR A 245 TRP A 253 -1 N ILE A 252 O LEU A 260 SHEET 5 A 5 ALA A 233 GLY A 241 -1 N GLY A 239 O ASN A 247 SHEET 1 B 2 PHE A 69 ALA A 70 0 SHEET 2 B 2 THR A 183 THR A 184 -1 O THR A 184 N PHE A 69 SHEET 1 C 2 ARG A 97 LEU A 98 0 SHEET 2 C 2 MET A 120 THR A 121 -1 O MET A 120 N LEU A 98 CISPEP 1 GLU A 169 PRO A 170 0 -0.72 SITE 1 AC1 8 SER A 73 SER A 133 LYS A 237 THR A 238 SITE 2 AC1 8 GLY A 239 ALA A 240 HOH A 524 HOH A 570 SITE 1 AC2 7 SER A 231 TRP A 232 PRO A 254 GLU A 255 SITE 2 AC2 7 ASN A 256 HIS A 257 HOH A 557 SITE 1 AC3 4 ARG A 97 GLU A 124 GLY A 221 HOH A 560 SITE 1 AC4 6 ARG A 68 LYS A 102 LYS A 180 GLU A 255 SITE 2 AC4 6 HOH A 474 HOH A 520 SITE 1 AC5 2 ARG A 181 HOH A 596 CRYST1 46.545 73.431 84.561 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011826 0.00000