data_3C1P # _entry.id 3C1P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3C1P pdb_00003c1p 10.2210/pdb3c1p/pdb NDB UP0007 ? ? RCSB RCSB046230 ? ? WWPDB D_1000046230 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-07-25 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2013-06-26 6 'Structure model' 1 5 2014-11-26 7 'Structure model' 2 0 2019-03-27 8 'Structure model' 3 0 2023-11-15 9 'Structure model' 3 1 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Other 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Structure summary' 6 7 'Structure model' Advisory 7 7 'Structure model' 'Data collection' 8 7 'Structure model' 'Database references' 9 7 'Structure model' 'Derived calculations' 10 7 'Structure model' 'Polymer sequence' 11 7 'Structure model' 'Source and taxonomy' 12 8 'Structure model' 'Atomic model' 13 8 'Structure model' 'Data collection' 14 8 'Structure model' 'Database references' 15 8 'Structure model' 'Derived calculations' 16 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' entity_poly 2 7 'Structure model' pdbx_entity_src_syn 3 7 'Structure model' pdbx_unobs_or_zero_occ_atoms 4 7 'Structure model' struct_conn 5 7 'Structure model' struct_ref 6 7 'Structure model' struct_ref_seq 7 8 'Structure model' atom_site 8 8 'Structure model' chem_comp_atom 9 8 'Structure model' chem_comp_bond 10 8 'Structure model' database_2 11 8 'Structure model' struct_site 12 9 'Structure model' pdbx_entry_details 13 9 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_entity_poly.type' 2 7 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 3 7 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 4 7 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 5 7 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 6 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 8 'Structure model' '_atom_site.B_iso_or_equiv' 8 8 'Structure model' '_atom_site.Cartn_x' 9 8 'Structure model' '_atom_site.Cartn_y' 10 8 'Structure model' '_atom_site.Cartn_z' 11 8 'Structure model' '_atom_site.auth_atom_id' 12 8 'Structure model' '_atom_site.label_alt_id' 13 8 'Structure model' '_atom_site.label_atom_id' 14 8 'Structure model' '_atom_site.occupancy' 15 8 'Structure model' '_database_2.pdbx_DOI' 16 8 'Structure model' '_database_2.pdbx_database_accession' 17 8 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 8 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 8 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3C1P _pdbx_database_status.recvd_initial_deposition_date 2008-01-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuesta-Seijo, J.A.' 1 'Sheldrick, G.M.' 2 'Zhang, J.' 3 'Diederichsen, U.' 4 # _citation.id primary _citation.title 'Continuous beta-turn fold of an alternating alanyl/homoalanyl peptide nucleic acid.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 1067 _citation.page_last 1070 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22868773 _citation.pdbx_database_id_DOI 10.1107/S090744491202118X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuesta-Seijo, J.A.' 1 ? primary 'Zhang, J.' 2 ? primary 'Diederichsen, U.' 3 ? primary 'Sheldrick, G.M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Peptide Nucleic Acid DLY-HGL-AGD-LHC-AGD-LHC-CUD-LYS' 1518.503 4 ? ? ? ? 2 water nat water 18.015 140 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'peptide nucleic acid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DLY)(HGL)(AGD)(LHC)(AGD)(LHC)(CUD)K' _entity_poly.pdbx_seq_one_letter_code_can KXXXXXXK _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DLY n 1 2 HGL n 1 3 AGD n 1 4 LHC n 1 5 AGD n 1 6 LHC n 1 7 CUD n 1 8 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details Synthetic # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AGD 'D-peptide linking' . '3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-D-alanine' ? 'C8 H10 N6 O3' 238.203 CUD 'D-peptide linking' . '3-(4-amino-2-oxopyrimidin-1(2H)-yl)-D-alanine' ? 'C7 H10 N4 O3' 198.179 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 HGL 'L-peptide linking' . '(2S)-2-amino-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)butanoic acid' ? 'C9 H12 N6 O3' 252.230 HOH non-polymer . WATER ? 'H2 O' 18.015 LHC 'L-peptide linking' . '(2S)-2-amino-4-(4-amino-2-oxopyrimidin-1(2H)-yl)butanoic acid' ? 'C8 H12 N4 O3' 212.206 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DLY 1 11 11 DLY DLY A . n A 1 2 HGL 2 12 12 HGL HGL A . n A 1 3 AGD 3 13 13 AGD AGD A . n A 1 4 LHC 4 14 14 LHC LHC A . n A 1 5 AGD 5 15 15 AGD AGD A . n A 1 6 LHC 6 16 16 LHC LHC A . n A 1 7 CUD 7 17 17 CUD CUD A . n A 1 8 LYS 8 18 18 LYS LYS A . n B 1 1 DLY 1 21 21 DLY DLY B . n B 1 2 HGL 2 22 22 HGL HGL B . n B 1 3 AGD 3 23 23 AGD AGD B . n B 1 4 LHC 4 24 24 LHC LHC B . n B 1 5 AGD 5 25 25 AGD AGD B . n B 1 6 LHC 6 26 26 LHC LHC B . n B 1 7 CUD 7 27 27 CUD CUD B . n B 1 8 LYS 8 28 28 LYS LYS B . n C 1 1 DLY 1 31 31 DLY DLY C . n C 1 2 HGL 2 32 32 HGL HGL C . n C 1 3 AGD 3 33 33 AGD AGD C . n C 1 4 LHC 4 34 34 LHC LHC C . n C 1 5 AGD 5 35 35 AGD AGD C . n C 1 6 LHC 6 36 36 LHC LHC C . n C 1 7 CUD 7 37 37 CUD CUD C . n C 1 8 LYS 8 38 38 LYS LYS C . n D 1 1 DLY 1 41 41 DLY DLY D . n D 1 2 HGL 2 42 42 HGL HGL D . n D 1 3 AGD 3 43 43 AGD AGD D . n D 1 4 LHC 4 44 44 LHC LHC D . n D 1 5 AGD 5 45 45 AGD AGD D . n D 1 6 LHC 6 46 46 LHC LHC D . n D 1 7 CUD 7 47 47 CUD CUD D . n D 1 8 LYS 8 48 48 LYS LYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 51 51 HOH HOH A . E 2 HOH 2 54 54 HOH HOH A . E 2 HOH 3 55 55 HOH HOH A . E 2 HOH 4 59 59 HOH HOH A . E 2 HOH 5 61 61 HOH HOH A . E 2 HOH 6 64 64 HOH HOH A . E 2 HOH 7 65 65 HOH HOH A . E 2 HOH 8 67 67 HOH HOH A . E 2 HOH 9 69 69 HOH HOH A . E 2 HOH 10 75 75 HOH HOH A . E 2 HOH 11 76 76 HOH HOH A . E 2 HOH 12 84 84 HOH HOH A . E 2 HOH 13 87 87 HOH HOH A . E 2 HOH 14 93 93 HOH HOH A . E 2 HOH 15 102 102 HOH HOH A . E 2 HOH 16 110 110 HOH HOH A . E 2 HOH 17 111 111 HOH HOH A . E 2 HOH 18 112 112 HOH HOH A . E 2 HOH 19 114 114 HOH HOH A . E 2 HOH 20 117 117 HOH HOH A . E 2 HOH 21 122 122 HOH HOH A . E 2 HOH 22 123 123 HOH HOH A . E 2 HOH 23 129 129 HOH HOH A . E 2 HOH 24 130 130 HOH HOH A . E 2 HOH 25 132 132 HOH HOH A . E 2 HOH 26 133 133 HOH HOH A . E 2 HOH 27 134 134 HOH HOH A . E 2 HOH 28 145 145 HOH HOH A . E 2 HOH 29 148 148 HOH HOH A . E 2 HOH 30 154 154 HOH HOH A . E 2 HOH 31 157 157 HOH HOH A . E 2 HOH 32 161 161 HOH HOH A . E 2 HOH 33 163 163 HOH HOH A . E 2 HOH 34 164 164 HOH HOH A . E 2 HOH 35 168 168 HOH HOH A . E 2 HOH 36 172 172 HOH HOH A . E 2 HOH 37 173 173 HOH HOH A . E 2 HOH 38 189 189 HOH HOH A . E 2 HOH 39 195 195 HOH HOH A . E 2 HOH 40 196 196 HOH HOH A . E 2 HOH 41 197 197 HOH HOH A . E 2 HOH 42 198 198 HOH HOH A . E 2 HOH 43 200 200 HOH HOH A . E 2 HOH 44 212 212 HOH HOH A . F 2 HOH 1 52 52 HOH HOH B . F 2 HOH 2 56 56 HOH HOH B . F 2 HOH 3 81 81 HOH HOH B . F 2 HOH 4 85 85 HOH HOH B . F 2 HOH 5 90 90 HOH HOH B . F 2 HOH 6 95 95 HOH HOH B . F 2 HOH 7 107 107 HOH HOH B . F 2 HOH 8 113 113 HOH HOH B . F 2 HOH 9 120 120 HOH HOH B . F 2 HOH 10 125 125 HOH HOH B . F 2 HOH 11 139 139 HOH HOH B . F 2 HOH 12 140 140 HOH HOH B . F 2 HOH 13 141 141 HOH HOH B . F 2 HOH 14 142 142 HOH HOH B . F 2 HOH 15 146 146 HOH HOH B . F 2 HOH 16 149 149 HOH HOH B . F 2 HOH 17 153 153 HOH HOH B . F 2 HOH 18 156 156 HOH HOH B . F 2 HOH 19 160 160 HOH HOH B . F 2 HOH 20 162 162 HOH HOH B . F 2 HOH 21 185 185 HOH HOH B . F 2 HOH 22 186 186 HOH HOH B . F 2 HOH 23 187 187 HOH HOH B . F 2 HOH 24 188 188 HOH HOH B . F 2 HOH 25 190 190 HOH HOH B . F 2 HOH 26 191 191 HOH HOH B . F 2 HOH 27 194 194 HOH HOH B . F 2 HOH 28 202 202 HOH HOH B . F 2 HOH 29 213 213 HOH HOH B . G 2 HOH 1 53 53 HOH HOH C . G 2 HOH 2 58 58 HOH HOH C . G 2 HOH 3 60 60 HOH HOH C . G 2 HOH 4 63 63 HOH HOH C . G 2 HOH 5 66 66 HOH HOH C . G 2 HOH 6 68 68 HOH HOH C . G 2 HOH 7 71 71 HOH HOH C . G 2 HOH 8 72 72 HOH HOH C . G 2 HOH 9 73 73 HOH HOH C . G 2 HOH 10 79 79 HOH HOH C . G 2 HOH 11 83 83 HOH HOH C . G 2 HOH 12 86 86 HOH HOH C . G 2 HOH 13 92 92 HOH HOH C . G 2 HOH 14 94 94 HOH HOH C . G 2 HOH 15 97 97 HOH HOH C . G 2 HOH 16 103 103 HOH HOH C . G 2 HOH 17 106 106 HOH HOH C . G 2 HOH 18 109 109 HOH HOH C . G 2 HOH 19 115 115 HOH HOH C . G 2 HOH 20 116 116 HOH HOH C . G 2 HOH 21 131 131 HOH HOH C . G 2 HOH 22 135 135 HOH HOH C . G 2 HOH 23 137 137 HOH HOH C . G 2 HOH 24 143 143 HOH HOH C . G 2 HOH 25 144 144 HOH HOH C . G 2 HOH 26 159 159 HOH HOH C . G 2 HOH 27 166 166 HOH HOH C . G 2 HOH 28 170 170 HOH HOH C . G 2 HOH 29 178 178 HOH HOH C . G 2 HOH 30 182 182 HOH HOH C . G 2 HOH 31 192 192 HOH HOH C . G 2 HOH 32 199 199 HOH HOH C . G 2 HOH 33 204 204 HOH HOH C . G 2 HOH 34 205 205 HOH HOH C . H 2 HOH 1 57 57 HOH HOH D . H 2 HOH 2 62 62 HOH HOH D . H 2 HOH 3 70 70 HOH HOH D . H 2 HOH 4 74 74 HOH HOH D . H 2 HOH 5 77 77 HOH HOH D . H 2 HOH 6 78 78 HOH HOH D . H 2 HOH 7 80 80 HOH HOH D . H 2 HOH 8 82 82 HOH HOH D . H 2 HOH 9 88 88 HOH HOH D . H 2 HOH 10 91 91 HOH HOH D . H 2 HOH 11 96 96 HOH HOH D . H 2 HOH 12 98 98 HOH HOH D . H 2 HOH 13 99 99 HOH HOH D . H 2 HOH 14 101 101 HOH HOH D . H 2 HOH 15 104 104 HOH HOH D . H 2 HOH 16 105 105 HOH HOH D . H 2 HOH 17 108 108 HOH HOH D . H 2 HOH 18 118 118 HOH HOH D . H 2 HOH 19 121 121 HOH HOH D . H 2 HOH 20 126 126 HOH HOH D . H 2 HOH 21 128 128 HOH HOH D . H 2 HOH 22 136 136 HOH HOH D . H 2 HOH 23 138 138 HOH HOH D . H 2 HOH 24 152 152 HOH HOH D . H 2 HOH 25 158 158 HOH HOH D . H 2 HOH 26 165 165 HOH HOH D . H 2 HOH 27 169 169 HOH HOH D . H 2 HOH 28 193 193 HOH HOH D . H 2 HOH 29 206 206 HOH HOH D . H 2 HOH 30 207 207 HOH HOH D . H 2 HOH 31 209 209 HOH HOH D . H 2 HOH 32 210 210 HOH HOH D . H 2 HOH 33 211 211 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D DLY 41 ? CG ? D DLY 1 CG 2 1 Y 1 D DLY 41 ? CD ? D DLY 1 CD 3 1 Y 1 D DLY 41 ? CE ? D DLY 1 CE 4 1 Y 1 D DLY 41 ? NZ ? D DLY 1 NZ 5 1 Y 1 D LYS 48 ? C ? D LYS 8 C 6 1 Y 1 D LYS 48 ? O ? D LYS 8 O 7 1 Y 1 D LYS 48 ? CB ? D LYS 8 CB 8 1 Y 1 D LYS 48 ? CG ? D LYS 8 CG 9 1 Y 1 D LYS 48 ? CD ? D LYS 8 CD 10 1 Y 1 D LYS 48 ? CE ? D LYS 8 CE 11 1 Y 1 D LYS 48 ? NZ ? D LYS 8 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXD phasing . ? 2 SHELXL-97 refinement . ? 3 XDS 'data reduction' . ? 4 SADABS 'data scaling' . ? 5 # _cell.entry_id 3C1P _cell.length_a 26.308 _cell.length_b 30.733 _cell.length_c 33.550 _cell.angle_alpha 90.00 _cell.angle_beta 99.53 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C1P _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3C1P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '1,6-hexanediol, MgCl2, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 1,6-hexanediol ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 Tris-HCl ? ? ? 1 4 1 H2O ? ? ? 1 5 2 1,6-hexanediol ? ? ? 1 6 2 MgCl2 ? ? ? 1 7 2 Tris-HCl ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2005-03-05 _diffrn_detector.details 'bendable mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.7999 # _reflns.entry_id 3C1P _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.0 _reflns.d_resolution_low 40.0 _reflns.number_all 28613 _reflns.number_obs 28613 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.0639 _reflns.pdbx_Rsym_value 0.0639 _reflns.pdbx_netI_over_sigmaI 18.13 _reflns.B_iso_Wilson_estimate 12.7 _reflns.pdbx_redundancy 12.99 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.00 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.436 _reflns_shell.pdbx_Rsym_value 0.436 _reflns_shell.meanI_over_sigI_obs 4.67 _reflns_shell.pdbx_redundancy 11.32 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 6570 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3C1P _refine.ls_d_res_high 1.0 _refine.ls_d_res_low 40.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 28537 _refine.ls_number_reflns_obs 28537 _refine.ls_number_reflns_R_free 1425 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_all 0.1529 _refine.ls_R_factor_obs 0.1529 _refine.ls_R_factor_R_work 0.1503 _refine.ls_R_factor_R_free 0.2019 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 5 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Parkinson for nucleobases, Engh & Huber for peptide part' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.B_iso_mean 22.4 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details 'same distance restraints for link between peptide and nucleobases with no target values' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 397 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 537 _refine_hist.d_res_high 1.0 _refine_hist.d_res_low 40.0 # _database_PDB_matrix.entry_id 3C1P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3C1P _struct.title 'Crystal Structure of an alternating D-Alanyl, L-Homoalanyl PNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C1P _struct_keywords.pdbx_keywords 'PEPTIDE NUCLEIC ACID' _struct_keywords.text 'Synthetic, Peptide Nucleic Acid, PNA, alanyl, homoalanyl, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3C1P _struct_ref.pdbx_db_accession 3C1P _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3C1P A 1 ? 8 ? 3C1P 11 ? 18 ? 11 18 2 1 3C1P B 1 ? 8 ? 3C1P 21 ? 28 ? 21 28 3 1 3C1P C 1 ? 8 ? 3C1P 31 ? 38 ? 31 38 4 1 3C1P D 1 ? 8 ? 3C1P 41 ? 48 ? 41 48 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DLY 1 C ? ? ? 1_555 A HGL 2 N ? ? A DLY 11 A HGL 12 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A HGL 2 C ? ? ? 1_555 A AGD 3 N ? ? A HGL 12 A AGD 13 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale3 covale both ? A AGD 3 C ? ? ? 1_555 A LHC 4 N ? ? A AGD 13 A LHC 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A LHC 4 C ? ? ? 1_555 A AGD 5 N ? ? A LHC 14 A AGD 15 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale5 covale both ? A AGD 5 C ? ? ? 1_555 A LHC 6 N ? ? A AGD 15 A LHC 16 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale6 covale both ? A LHC 6 C ? ? ? 1_555 A CUD 7 N ? ? A LHC 16 A CUD 17 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? A CUD 7 C A ? ? 1_555 A LYS 8 N A ? A CUD 17 A LYS 18 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B DLY 1 C ? ? ? 1_555 B HGL 2 N ? ? B DLY 21 B HGL 22 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale9 covale both ? B HGL 2 C ? ? ? 1_555 B AGD 3 N ? ? B HGL 22 B AGD 23 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale10 covale both ? B AGD 3 C ? ? ? 1_555 B LHC 4 N ? ? B AGD 23 B LHC 24 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale11 covale both ? B LHC 4 C ? ? ? 1_555 B AGD 5 N ? ? B LHC 24 B AGD 25 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? B AGD 5 C ? ? ? 1_555 B LHC 6 N ? ? B AGD 25 B LHC 26 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale13 covale both ? B LHC 6 C ? ? ? 1_555 B CUD 7 N ? ? B LHC 26 B CUD 27 1_555 ? ? ? ? ? ? ? 1.298 ? ? covale14 covale both ? B CUD 7 C ? ? ? 1_555 B LYS 8 N ? ? B CUD 27 B LYS 28 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale15 covale both ? C DLY 1 C ? ? ? 1_555 C HGL 2 N ? ? C DLY 31 C HGL 32 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale16 covale both ? C HGL 2 C ? ? ? 1_555 C AGD 3 N ? ? C HGL 32 C AGD 33 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale17 covale both ? C AGD 3 C ? ? ? 1_555 C LHC 4 N ? ? C AGD 33 C LHC 34 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale18 covale both ? C LHC 4 C ? ? ? 1_555 C AGD 5 N ? ? C LHC 34 C AGD 35 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale19 covale both ? C AGD 5 C ? ? ? 1_555 C LHC 6 N ? ? C AGD 35 C LHC 36 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? C LHC 6 C ? ? ? 1_555 C CUD 7 N ? ? C LHC 36 C CUD 37 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale21 covale both ? C CUD 7 C ? ? ? 1_555 C LYS 8 N ? ? C CUD 37 C LYS 38 1_555 ? ? ? ? ? ? ? 1.296 ? ? covale22 covale both ? D DLY 1 C A ? ? 1_555 D HGL 2 N A ? D DLY 41 D HGL 42 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale23 covale both ? D DLY 1 C B ? ? 1_555 D HGL 2 N B ? D DLY 41 D HGL 42 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale24 covale both ? D HGL 2 C ? ? ? 1_555 D AGD 3 N ? ? D HGL 42 D AGD 43 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale25 covale both ? D AGD 3 C ? ? ? 1_555 D LHC 4 N ? ? D AGD 43 D LHC 44 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale26 covale both ? D LHC 4 C ? ? ? 1_555 D AGD 5 N ? ? D LHC 44 D AGD 45 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale27 covale both ? D AGD 5 C ? ? ? 1_555 D LHC 6 N ? ? D AGD 45 D LHC 46 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale28 covale both ? D LHC 6 C ? ? ? 1_555 D CUD 7 N ? ? D LHC 46 D CUD 47 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale29 covale both ? D CUD 7 C A ? ? 1_555 D LYS 8 N A ? D CUD 47 D LYS 48 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale30 covale both ? D CUD 7 C B ? ? 1_555 D LYS 8 N B ? D CUD 47 D LYS 48 1_555 ? ? ? ? ? ? ? 1.346 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 HGL A 2 ? . . . . HGL A 12 ? 1_555 . . . . . . . ? 1 HGL None 'Non-standard residue' 2 AGD A 3 ? . . . . AGD A 13 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 3 LHC A 4 ? . . . . LHC A 14 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 4 AGD A 5 ? . . . . AGD A 15 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 5 LHC A 6 ? . . . . LHC A 16 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 6 CUD A 7 ? . . . . CUD A 17 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' 7 CUD A 7 A . . . . CUD A 17 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' 8 HGL B 2 ? . . . . HGL B 22 ? 1_555 . . . . . . . ? 1 HGL None 'Non-standard residue' 9 AGD B 3 ? . . . . AGD B 23 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 10 LHC B 4 ? . . . . LHC B 24 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 11 AGD B 5 ? . . . . AGD B 25 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 12 LHC B 6 ? . . . . LHC B 26 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 13 CUD B 7 ? . . . . CUD B 27 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' 14 HGL C 2 ? . . . . HGL C 32 ? 1_555 . . . . . . . ? 1 HGL None 'Non-standard residue' 15 AGD C 3 ? . . . . AGD C 33 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 16 LHC C 4 ? . . . . LHC C 34 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 17 AGD C 5 ? . . . . AGD C 35 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 18 LHC C 6 ? . . . . LHC C 36 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 19 CUD C 7 ? . . . . CUD C 37 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' 20 HGL D 2 ? . . . . HGL D 42 ? 1_555 . . . . . . . ? 1 HGL None 'Non-standard residue' 21 HGL D 2 A . . . . HGL D 42 ? 1_555 . . . . . . . ? 1 HGL None 'Non-standard residue' 22 HGL D 2 B . . . . HGL D 42 ? 1_555 . . . . . . . ? 1 HGL None 'Non-standard residue' 23 AGD D 3 ? . . . . AGD D 43 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 24 LHC D 4 ? . . . . LHC D 44 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 25 AGD D 5 ? . . . . AGD D 45 ? 1_555 . . . . . . . ? 1 AGD None 'Non-standard residue' 26 LHC D 6 ? . . . . LHC D 46 ? 1_555 . . . . . . . ? 1 LHC None 'Non-standard residue' 27 CUD D 7 ? . . . . CUD D 47 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' 28 CUD D 7 A . . . . CUD D 47 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' 29 CUD D 7 B . . . . CUD D 47 ? 1_555 . . . . . . . ? 1 CUD None 'Non-standard residue' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DLY 11 ? 6 'BINDING SITE FOR RESIDUE DLY A 11' AC2 Software A HGL 12 ? 9 'BINDING SITE FOR RESIDUE HGL A 12' AC3 Software A AGD 13 ? 10 'BINDING SITE FOR RESIDUE AGD A 13' AC4 Software A LHC 14 ? 10 'BINDING SITE FOR RESIDUE LHC A 14' AC5 Software A AGD 15 ? 12 'BINDING SITE FOR RESIDUE AGD A 15' AC6 Software A LHC 16 ? 11 'BINDING SITE FOR RESIDUE LHC A 16' AC7 Software A CUD 17 ? 7 'BINDING SITE FOR RESIDUE CUD A 17' AC8 Software B DLY 21 ? 6 'BINDING SITE FOR RESIDUE DLY B 21' AC9 Software B HGL 22 ? 7 'BINDING SITE FOR RESIDUE HGL B 22' BC1 Software B AGD 23 ? 9 'BINDING SITE FOR RESIDUE AGD B 23' BC2 Software B LHC 24 ? 10 'BINDING SITE FOR RESIDUE LHC B 24' BC3 Software B AGD 25 ? 7 'BINDING SITE FOR RESIDUE AGD B 25' BC4 Software B LHC 26 ? 9 'BINDING SITE FOR RESIDUE LHC B 26' BC5 Software B CUD 27 ? 5 'BINDING SITE FOR RESIDUE CUD B 27' BC6 Software C DLY 31 ? 6 'BINDING SITE FOR RESIDUE DLY C 31' BC7 Software C HGL 32 ? 8 'BINDING SITE FOR RESIDUE HGL C 32' BC8 Software C AGD 33 ? 12 'BINDING SITE FOR RESIDUE AGD C 33' BC9 Software C LHC 34 ? 10 'BINDING SITE FOR RESIDUE LHC C 34' CC1 Software C AGD 35 ? 10 'BINDING SITE FOR RESIDUE AGD C 35' CC2 Software C LHC 36 ? 10 'BINDING SITE FOR RESIDUE LHC C 36' CC3 Software C CUD 37 ? 7 'BINDING SITE FOR RESIDUE CUD C 37' CC4 Software D DLY 41 ? 4 'BINDING SITE FOR RESIDUE DLY D 41' CC5 Software D HGL 42 ? 11 'BINDING SITE FOR RESIDUE HGL D 42' CC6 Software D AGD 43 ? 12 'BINDING SITE FOR RESIDUE AGD D 43' CC7 Software D LHC 44 ? 9 'BINDING SITE FOR RESIDUE LHC D 44' CC8 Software D AGD 45 ? 12 'BINDING SITE FOR RESIDUE AGD D 45' CC9 Software D LHC 46 ? 11 'BINDING SITE FOR RESIDUE LHC D 46' DC1 Software D CUD 47 ? 7 'BINDING SITE FOR RESIDUE CUD D 47' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HGL A 2 ? HGL A 12 . ? 1_555 ? 2 AC1 6 AGD A 3 ? AGD A 13 . ? 1_555 ? 3 AC1 6 LHC A 4 ? LHC A 14 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 75 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 130 . ? 1_555 ? 6 AC1 6 HGL D 2 ? HGL D 42 . ? 1_545 ? 7 AC2 9 DLY A 1 ? DLY A 11 . ? 1_555 ? 8 AC2 9 AGD A 3 ? AGD A 13 . ? 1_555 ? 9 AC2 9 LHC A 4 ? LHC A 14 . ? 1_555 ? 10 AC2 9 HOH E . ? HOH A 55 . ? 1_555 ? 11 AC2 9 HOH E . ? HOH A 87 . ? 1_555 ? 12 AC2 9 HOH E . ? HOH A 196 . ? 1_555 ? 13 AC2 9 HOH E . ? HOH A 200 . ? 1_555 ? 14 AC2 9 LHC B 6 ? LHC B 26 . ? 1_555 ? 15 AC2 9 CUD B 7 ? CUD B 27 . ? 1_555 ? 16 AC3 10 DLY A 1 ? DLY A 11 . ? 1_555 ? 17 AC3 10 HGL A 2 ? HGL A 12 . ? 1_555 ? 18 AC3 10 LHC A 4 ? LHC A 14 . ? 1_555 ? 19 AC3 10 AGD A 5 ? AGD A 15 . ? 1_555 ? 20 AC3 10 LHC A 6 ? LHC A 16 . ? 1_555 ? 21 AC3 10 HOH E . ? HOH A 64 . ? 1_555 ? 22 AC3 10 HOH E . ? HOH A 112 . ? 1_555 ? 23 AC3 10 HOH E . ? HOH A 145 . ? 1_555 ? 24 AC3 10 AGD B 3 ? AGD B 23 . ? 1_555 ? 25 AC3 10 LHC B 6 ? LHC B 26 . ? 1_555 ? 26 AC4 10 DLY A 1 ? DLY A 11 . ? 1_555 ? 27 AC4 10 HGL A 2 ? HGL A 12 . ? 1_555 ? 28 AC4 10 AGD A 3 ? AGD A 13 . ? 1_555 ? 29 AC4 10 AGD A 5 ? AGD A 15 . ? 1_555 ? 30 AC4 10 LHC A 6 ? LHC A 16 . ? 1_555 ? 31 AC4 10 HOH E . ? HOH A 51 . ? 1_555 ? 32 AC4 10 HOH E . ? HOH A 111 . ? 1_555 ? 33 AC4 10 HOH E . ? HOH A 132 . ? 1_555 ? 34 AC4 10 LHC C 4 ? LHC C 34 . ? 1_555 ? 35 AC4 10 AGD C 5 ? AGD C 35 . ? 1_555 ? 36 AC5 12 AGD A 3 ? AGD A 13 . ? 1_555 ? 37 AC5 12 LHC A 4 ? LHC A 14 . ? 1_555 ? 38 AC5 12 LHC A 6 ? LHC A 16 . ? 1_555 ? 39 AC5 12 CUD A 7 ? CUD A 17 . ? 1_555 ? 40 AC5 12 LYS A 8 ? LYS A 18 . ? 1_555 ? 41 AC5 12 HOH E . ? HOH A 65 . ? 1_555 ? 42 AC5 12 HOH E . ? HOH A 69 . ? 1_555 ? 43 AC5 12 HOH E . ? HOH A 76 . ? 1_555 ? 44 AC5 12 HOH E . ? HOH A 114 . ? 1_555 ? 45 AC5 12 DLY C 1 ? DLY C 31 . ? 1_555 ? 46 AC5 12 LHC C 4 ? LHC C 34 . ? 1_555 ? 47 AC5 12 HOH G . ? HOH C 86 . ? 1_555 ? 48 AC6 11 AGD A 3 ? AGD A 13 . ? 1_555 ? 49 AC6 11 LHC A 4 ? LHC A 14 . ? 1_555 ? 50 AC6 11 AGD A 5 ? AGD A 15 . ? 1_555 ? 51 AC6 11 CUD A 7 ? CUD A 17 . ? 1_555 ? 52 AC6 11 LYS A 8 ? LYS A 18 . ? 1_555 ? 53 AC6 11 HOH E . ? HOH A 84 . ? 1_555 ? 54 AC6 11 HOH E . ? HOH A 102 . ? 1_555 ? 55 AC6 11 HOH E . ? HOH A 122 . ? 1_555 ? 56 AC6 11 HOH E . ? HOH A 172 . ? 1_555 ? 57 AC6 11 HGL B 2 ? HGL B 22 . ? 1_555 ? 58 AC6 11 AGD B 3 ? AGD B 23 . ? 1_555 ? 59 AC7 7 AGD A 5 ? AGD A 15 . ? 1_555 ? 60 AC7 7 LHC A 6 ? LHC A 16 . ? 1_555 ? 61 AC7 7 LYS A 8 ? LYS A 18 . ? 1_555 ? 62 AC7 7 HOH E . ? HOH A 117 . ? 1_555 ? 63 AC7 7 HOH E . ? HOH A 129 . ? 1_555 ? 64 AC7 7 HOH E . ? HOH A 163 . ? 1_555 ? 65 AC7 7 HGL B 2 ? HGL B 22 . ? 1_555 ? 66 AC8 6 HGL B 2 ? HGL B 22 . ? 1_555 ? 67 AC8 6 AGD B 3 ? AGD B 23 . ? 1_555 ? 68 AC8 6 LHC B 4 ? LHC B 24 . ? 1_555 ? 69 AC8 6 HOH F . ? HOH B 160 . ? 1_555 ? 70 AC8 6 HOH F . ? HOH B 185 . ? 1_555 ? 71 AC8 6 AGD D 5 ? AGD D 45 . ? 1_555 ? 72 AC9 7 LHC A 6 ? LHC A 16 . ? 1_555 ? 73 AC9 7 CUD A 7 ? CUD A 17 . ? 1_555 ? 74 AC9 7 DLY B 1 ? DLY B 21 . ? 1_555 ? 75 AC9 7 AGD B 3 ? AGD B 23 . ? 1_555 ? 76 AC9 7 LHC B 4 ? LHC B 24 . ? 1_555 ? 77 AC9 7 HOH F . ? HOH B 85 . ? 1_555 ? 78 AC9 7 HOH F . ? HOH B 107 . ? 1_555 ? 79 BC1 9 AGD A 3 ? AGD A 13 . ? 1_555 ? 80 BC1 9 LHC A 6 ? LHC A 16 . ? 1_555 ? 81 BC1 9 DLY B 1 ? DLY B 21 . ? 1_555 ? 82 BC1 9 HGL B 2 ? HGL B 22 . ? 1_555 ? 83 BC1 9 LHC B 4 ? LHC B 24 . ? 1_555 ? 84 BC1 9 AGD B 5 ? AGD B 25 . ? 1_555 ? 85 BC1 9 LHC B 6 ? LHC B 26 . ? 1_555 ? 86 BC1 9 HOH F . ? HOH B 120 . ? 1_555 ? 87 BC1 9 HOH F . ? HOH B 149 . ? 1_555 ? 88 BC2 10 DLY B 1 ? DLY B 21 . ? 1_555 ? 89 BC2 10 HGL B 2 ? HGL B 22 . ? 1_555 ? 90 BC2 10 AGD B 3 ? AGD B 23 . ? 1_555 ? 91 BC2 10 AGD B 5 ? AGD B 25 . ? 1_555 ? 92 BC2 10 LHC B 6 ? LHC B 26 . ? 1_555 ? 93 BC2 10 HOH F . ? HOH B 52 . ? 1_555 ? 94 BC2 10 HOH F . ? HOH B 95 . ? 1_555 ? 95 BC2 10 HOH F . ? HOH B 140 . ? 1_555 ? 96 BC2 10 LHC D 4 ? LHC D 44 . ? 1_555 ? 97 BC2 10 AGD D 5 ? AGD D 45 . ? 1_555 ? 98 BC3 7 AGD B 3 ? AGD B 23 . ? 1_555 ? 99 BC3 7 LHC B 4 ? LHC B 24 . ? 1_555 ? 100 BC3 7 LHC B 6 ? LHC B 26 . ? 1_555 ? 101 BC3 7 CUD B 7 ? CUD B 27 . ? 1_555 ? 102 BC3 7 HOH F . ? HOH B 81 . ? 1_555 ? 103 BC3 7 HOH F . ? HOH B 188 . ? 1_555 ? 104 BC3 7 LHC D 4 ? LHC D 44 . ? 1_555 ? 105 BC4 9 HGL A 2 ? HGL A 12 . ? 1_555 ? 106 BC4 9 AGD A 3 ? AGD A 13 . ? 1_555 ? 107 BC4 9 AGD B 3 ? AGD B 23 . ? 1_555 ? 108 BC4 9 LHC B 4 ? LHC B 24 . ? 1_555 ? 109 BC4 9 AGD B 5 ? AGD B 25 . ? 1_555 ? 110 BC4 9 CUD B 7 ? CUD B 27 . ? 1_555 ? 111 BC4 9 HOH F . ? HOH B 139 . ? 1_555 ? 112 BC4 9 HOH F . ? HOH B 142 . ? 1_555 ? 113 BC4 9 HOH F . ? HOH B 186 . ? 1_555 ? 114 BC5 5 HGL A 2 ? HGL A 12 . ? 1_555 ? 115 BC5 5 AGD B 5 ? AGD B 25 . ? 1_555 ? 116 BC5 5 LHC B 6 ? LHC B 26 . ? 1_555 ? 117 BC5 5 LYS B 8 ? LYS B 28 . ? 1_555 ? 118 BC5 5 HOH F . ? HOH B 113 . ? 1_555 ? 119 BC6 6 AGD A 5 ? AGD A 15 . ? 1_555 ? 120 BC6 6 HGL C 2 ? HGL C 32 . ? 1_555 ? 121 BC6 6 AGD C 3 ? AGD C 33 . ? 1_555 ? 122 BC6 6 LHC C 4 ? LHC C 34 . ? 1_555 ? 123 BC6 6 HOH G . ? HOH C 86 . ? 1_555 ? 124 BC6 6 HOH G . ? HOH C 97 . ? 1_555 ? 125 BC7 8 DLY C 1 ? DLY C 31 . ? 1_555 ? 126 BC7 8 AGD C 3 ? AGD C 33 . ? 1_555 ? 127 BC7 8 LHC C 4 ? LHC C 34 . ? 1_555 ? 128 BC7 8 HOH G . ? HOH C 60 . ? 1_555 ? 129 BC7 8 HOH G . ? HOH C 68 . ? 1_555 ? 130 BC7 8 HOH G . ? HOH C 192 . ? 1_555 ? 131 BC7 8 LHC D 6 ? LHC D 46 . ? 1_555 ? 132 BC7 8 CUD D 7 ? CUD D 47 . ? 1_555 ? 133 BC8 12 DLY C 1 ? DLY C 31 . ? 1_555 ? 134 BC8 12 HGL C 2 ? HGL C 32 . ? 1_555 ? 135 BC8 12 LHC C 4 ? LHC C 34 . ? 1_555 ? 136 BC8 12 AGD C 5 ? AGD C 35 . ? 1_555 ? 137 BC8 12 LHC C 6 ? LHC C 36 . ? 1_555 ? 138 BC8 12 HOH G . ? HOH C 53 . ? 1_555 ? 139 BC8 12 HOH G . ? HOH C 116 . ? 1_555 ? 140 BC8 12 HOH G . ? HOH C 131 . ? 1_555 ? 141 BC8 12 HOH G . ? HOH C 135 . ? 1_555 ? 142 BC8 12 HOH G . ? HOH C 170 . ? 1_555 ? 143 BC8 12 AGD D 3 ? AGD D 43 . ? 1_555 ? 144 BC8 12 LHC D 6 ? LHC D 46 . ? 1_555 ? 145 BC9 10 LHC A 4 ? LHC A 14 . ? 1_555 ? 146 BC9 10 AGD A 5 ? AGD A 15 . ? 1_555 ? 147 BC9 10 DLY C 1 ? DLY C 31 . ? 1_555 ? 148 BC9 10 HGL C 2 ? HGL C 32 . ? 1_555 ? 149 BC9 10 AGD C 3 ? AGD C 33 . ? 1_555 ? 150 BC9 10 AGD C 5 ? AGD C 35 . ? 1_555 ? 151 BC9 10 LHC C 6 ? LHC C 36 . ? 1_555 ? 152 BC9 10 HOH G . ? HOH C 72 . ? 1_555 ? 153 BC9 10 HOH G . ? HOH C 79 . ? 1_555 ? 154 BC9 10 HOH G . ? HOH C 106 . ? 1_555 ? 155 CC1 10 LHC A 4 ? LHC A 14 . ? 1_555 ? 156 CC1 10 AGD C 3 ? AGD C 33 . ? 1_555 ? 157 CC1 10 LHC C 4 ? LHC C 34 . ? 1_555 ? 158 CC1 10 LHC C 6 ? LHC C 36 . ? 1_555 ? 159 CC1 10 CUD C 7 ? CUD C 37 . ? 1_555 ? 160 CC1 10 LYS C 8 ? LYS C 38 . ? 1_555 ? 161 CC1 10 HOH G . ? HOH C 58 . ? 1_555 ? 162 CC1 10 HOH G . ? HOH C 71 . ? 1_555 ? 163 CC1 10 HOH G . ? HOH C 83 . ? 1_555 ? 164 CC1 10 HOH G . ? HOH C 182 . ? 1_555 ? 165 CC2 10 AGD C 3 ? AGD C 33 . ? 1_555 ? 166 CC2 10 LHC C 4 ? LHC C 34 . ? 1_555 ? 167 CC2 10 AGD C 5 ? AGD C 35 . ? 1_555 ? 168 CC2 10 CUD C 7 ? CUD C 37 . ? 1_555 ? 169 CC2 10 LYS C 8 ? LYS C 38 . ? 1_555 ? 170 CC2 10 HOH G . ? HOH C 94 . ? 1_555 ? 171 CC2 10 HOH G . ? HOH C 103 . ? 1_555 ? 172 CC2 10 HOH G . ? HOH C 159 . ? 1_555 ? 173 CC2 10 HGL D 2 ? HGL D 42 . ? 1_555 ? 174 CC2 10 AGD D 3 ? AGD D 43 . ? 1_555 ? 175 CC3 7 AGD C 5 ? AGD C 35 . ? 1_555 ? 176 CC3 7 LHC C 6 ? LHC C 36 . ? 1_555 ? 177 CC3 7 LYS C 8 ? LYS C 38 . ? 1_555 ? 178 CC3 7 HOH G . ? HOH C 63 . ? 1_555 ? 179 CC3 7 HOH G . ? HOH C 166 . ? 1_555 ? 180 CC3 7 HGL D 2 ? HGL D 42 . ? 1_555 ? 181 CC3 7 HOH H . ? HOH D 70 . ? 1_555 ? 182 CC4 4 HGL D 2 ? HGL D 42 . ? 1_555 ? 183 CC4 4 AGD D 3 ? AGD D 43 . ? 1_555 ? 184 CC4 4 LHC D 4 ? LHC D 44 . ? 1_555 ? 185 CC4 4 HOH H . ? HOH D 138 . ? 1_555 ? 186 CC5 11 DLY A 1 ? DLY A 11 . ? 1_565 ? 187 CC5 11 LHC C 6 ? LHC C 36 . ? 1_555 ? 188 CC5 11 CUD C 7 ? CUD C 37 . ? 1_555 ? 189 CC5 11 DLY D 1 ? DLY D 41 . ? 1_555 ? 190 CC5 11 AGD D 3 ? AGD D 43 . ? 1_555 ? 191 CC5 11 LHC D 4 ? LHC D 44 . ? 1_555 ? 192 CC5 11 HOH H . ? HOH D 80 . ? 1_555 ? 193 CC5 11 HOH H . ? HOH D 82 . ? 1_555 ? 194 CC5 11 HOH H . ? HOH D 88 . ? 1_555 ? 195 CC5 11 HOH H . ? HOH D 96 . ? 1_555 ? 196 CC5 11 HOH H . ? HOH D 193 . ? 1_555 ? 197 CC6 12 AGD C 3 ? AGD C 33 . ? 1_555 ? 198 CC6 12 LHC C 6 ? LHC C 36 . ? 1_555 ? 199 CC6 12 HOH G . ? HOH C 116 . ? 1_555 ? 200 CC6 12 DLY D 1 ? DLY D 41 . ? 1_555 ? 201 CC6 12 HGL D 2 ? HGL D 42 . ? 1_555 ? 202 CC6 12 LHC D 4 ? LHC D 44 . ? 1_555 ? 203 CC6 12 AGD D 5 ? AGD D 45 . ? 1_555 ? 204 CC6 12 LHC D 6 ? LHC D 46 . ? 1_555 ? 205 CC6 12 HOH H . ? HOH D 104 . ? 1_555 ? 206 CC6 12 HOH H . ? HOH D 118 . ? 1_555 ? 207 CC6 12 HOH H . ? HOH D 158 . ? 1_555 ? 208 CC6 12 HOH H . ? HOH D 211 . ? 1_555 ? 209 CC7 9 LHC B 4 ? LHC B 24 . ? 1_555 ? 210 CC7 9 AGD B 5 ? AGD B 25 . ? 1_555 ? 211 CC7 9 DLY D 1 ? DLY D 41 . ? 1_555 ? 212 CC7 9 HGL D 2 ? HGL D 42 . ? 1_555 ? 213 CC7 9 AGD D 3 ? AGD D 43 . ? 1_555 ? 214 CC7 9 AGD D 5 ? AGD D 45 . ? 1_555 ? 215 CC7 9 LHC D 6 ? LHC D 46 . ? 1_555 ? 216 CC7 9 HOH H . ? HOH D 78 . ? 1_555 ? 217 CC7 9 HOH H . ? HOH D 128 . ? 1_555 ? 218 CC8 12 DLY B 1 ? DLY B 21 . ? 1_555 ? 219 CC8 12 LHC B 4 ? LHC B 24 . ? 1_555 ? 220 CC8 12 HOH F . ? HOH B 185 . ? 1_555 ? 221 CC8 12 AGD D 3 ? AGD D 43 . ? 1_555 ? 222 CC8 12 LHC D 4 ? LHC D 44 . ? 1_555 ? 223 CC8 12 LHC D 6 ? LHC D 46 . ? 1_555 ? 224 CC8 12 CUD D 7 ? CUD D 47 . ? 1_555 ? 225 CC8 12 LYS D 8 ? LYS D 48 . ? 1_555 ? 226 CC8 12 HOH H . ? HOH D 57 . ? 1_555 ? 227 CC8 12 HOH H . ? HOH D 62 . ? 1_555 ? 228 CC8 12 HOH H . ? HOH D 99 . ? 1_555 ? 229 CC8 12 HOH H . ? HOH D 108 . ? 1_555 ? 230 CC9 11 HGL C 2 ? HGL C 32 . ? 1_555 ? 231 CC9 11 AGD C 3 ? AGD C 33 . ? 1_555 ? 232 CC9 11 AGD D 3 ? AGD D 43 . ? 1_555 ? 233 CC9 11 LHC D 4 ? LHC D 44 . ? 1_555 ? 234 CC9 11 AGD D 5 ? AGD D 45 . ? 1_555 ? 235 CC9 11 CUD D 7 ? CUD D 47 . ? 1_555 ? 236 CC9 11 LYS D 8 ? LYS D 48 . ? 1_555 ? 237 CC9 11 HOH H . ? HOH D 74 . ? 1_555 ? 238 CC9 11 HOH H . ? HOH D 91 . ? 1_555 ? 239 CC9 11 HOH H . ? HOH D 98 . ? 1_555 ? 240 CC9 11 HOH H . ? HOH D 105 . ? 1_555 ? 241 DC1 7 HGL C 2 ? HGL C 32 . ? 1_555 ? 242 DC1 7 AGD D 5 ? AGD D 45 . ? 1_555 ? 243 DC1 7 LHC D 6 ? LHC D 46 . ? 1_555 ? 244 DC1 7 LYS D 8 ? LYS D 48 . ? 1_555 ? 245 DC1 7 HOH H . ? HOH D 77 . ? 1_555 ? 246 DC1 7 HOH H . ? HOH D 126 . ? 1_555 ? 247 DC1 7 HOH H . ? HOH D 169 . ? 1_555 ? # _pdbx_entry_details.entry_id 3C1P _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_molecule_features.prd_id PRD_000110 _pdbx_molecule_features.name DLY-HGL-AGD-LHC-AGD-LHC-CUD-LYS _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000110 A 2 PRD_000110 B 3 PRD_000110 C 4 PRD_000110 D # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AGD C2 C N N 1 AGD C4 C Y N 2 AGD C5 C Y N 3 AGD C6 C N N 4 AGD N N N N 5 AGD CA C N R 6 AGD CB C N N 7 AGD N9 N Y N 8 AGD N3 N N N 9 AGD N2 N N N 10 AGD N1 N N N 11 AGD O6 O N N 12 AGD N7 N Y N 13 AGD C8 C Y N 14 AGD C C N N 15 AGD O O N N 16 AGD OXT O N N 17 AGD HN1 H N N 18 AGD H H N N 19 AGD HA H N N 20 AGD HB H N N 21 AGD HBA H N N 22 AGD HN2 H N N 23 AGD HN2A H N N 24 AGD H8 H N N 25 AGD H2 H N N 26 AGD HXT H N N 27 CUD C2 C N N 28 CUD C4 C N N 29 CUD C5 C N N 30 CUD C6 C N N 31 CUD N N N N 32 CUD CA C N R 33 CUD CB C N N 34 CUD N1 N N N 35 CUD N4 N N N 36 CUD N3 N N N 37 CUD O2 O N N 38 CUD C C N N 39 CUD O O N N 40 CUD OXT O N N 41 CUD H H N N 42 CUD HA H N N 43 CUD HB H N N 44 CUD HBA H N N 45 CUD H6 H N N 46 CUD H5 H N N 47 CUD HN4 H N N 48 CUD HN4A H N N 49 CUD H2 H N N 50 CUD HXT H N N 51 DLY N N N N 52 DLY CA C N R 53 DLY C C N N 54 DLY O O N N 55 DLY CB C N N 56 DLY CG C N N 57 DLY CD C N N 58 DLY CE C N N 59 DLY NZ N N N 60 DLY OXT O N N 61 DLY H H N N 62 DLY H2 H N N 63 DLY HA H N N 64 DLY HB2 H N N 65 DLY HB3 H N N 66 DLY HG2 H N N 67 DLY HG3 H N N 68 DLY HD2 H N N 69 DLY HD3 H N N 70 DLY HE2 H N N 71 DLY HE3 H N N 72 DLY HZ1 H N N 73 DLY HZ2 H N N 74 DLY HXT H N N 75 HGL C2 C N N 76 HGL O6 O N N 77 HGL C4 C Y N 78 HGL C5 C Y N 79 HGL C6 C N N 80 HGL C8 C Y N 81 HGL N N N N 82 HGL CA C N S 83 HGL CB C N N 84 HGL CG C N N 85 HGL N9 N Y N 86 HGL N3 N N N 87 HGL N2 N N N 88 HGL N1 N N N 89 HGL N7 N Y N 90 HGL C C N N 91 HGL O O N N 92 HGL OXT O N N 93 HGL HN1 H N N 94 HGL H H N N 95 HGL HA H N N 96 HGL HB H N N 97 HGL HBA H N N 98 HGL HG H N N 99 HGL HGA H N N 100 HGL HN2 H N N 101 HGL HN2A H N N 102 HGL H8 H N N 103 HGL H2 H N N 104 HGL HXT H N N 105 HOH O O N N 106 HOH H1 H N N 107 HOH H2 H N N 108 LHC N N N N 109 LHC CA C N S 110 LHC CB C N N 111 LHC CG C N N 112 LHC N1 N N N 113 LHC C6 C N N 114 LHC C5 C N N 115 LHC C4 C N N 116 LHC N4 N N N 117 LHC N3 N N N 118 LHC C2 C N N 119 LHC O2 O N N 120 LHC C C N N 121 LHC O O N N 122 LHC OXT O N N 123 LHC H H N N 124 LHC HA H N N 125 LHC HB H N N 126 LHC HBA H N N 127 LHC HG H N N 128 LHC HGA H N N 129 LHC H6 H N N 130 LHC H5 H N N 131 LHC HN4 H N N 132 LHC HN4A H N N 133 LHC H2 H N N 134 LHC HXT H N N 135 LYS N N N N 136 LYS CA C N S 137 LYS C C N N 138 LYS O O N N 139 LYS CB C N N 140 LYS CG C N N 141 LYS CD C N N 142 LYS CE C N N 143 LYS NZ N N N 144 LYS OXT O N N 145 LYS H H N N 146 LYS H2 H N N 147 LYS HA H N N 148 LYS HB2 H N N 149 LYS HB3 H N N 150 LYS HG2 H N N 151 LYS HG3 H N N 152 LYS HD2 H N N 153 LYS HD3 H N N 154 LYS HE2 H N N 155 LYS HE3 H N N 156 LYS HZ1 H N N 157 LYS HZ2 H N N 158 LYS HZ3 H N N 159 LYS HXT H N N 160 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AGD N1 C2 sing N N 1 AGD C2 N2 sing N N 2 AGD C2 N3 doub N N 3 AGD C5 C4 doub Y N 4 AGD C4 N3 sing N N 5 AGD C4 N9 sing Y N 6 AGD C6 C5 sing N N 7 AGD N7 C5 sing Y N 8 AGD O6 C6 doub N N 9 AGD C6 N1 sing N N 10 AGD CA N sing N N 11 AGD N H sing N N 12 AGD N H2 sing N N 13 AGD CB CA sing N N 14 AGD HA CA sing N N 15 AGD CA C sing N N 16 AGD N9 CB sing N N 17 AGD HB CB sing N N 18 AGD CB HBA sing N N 19 AGD C8 N9 sing Y N 20 AGD HN2A N2 sing N N 21 AGD N2 HN2 sing N N 22 AGD HN1 N1 sing N N 23 AGD N7 C8 doub Y N 24 AGD C8 H8 sing N N 25 AGD O C doub N N 26 AGD C OXT sing N N 27 AGD OXT HXT sing N N 28 CUD N3 C2 sing N N 29 CUD N1 C2 sing N N 30 CUD C2 O2 doub N N 31 CUD N4 C4 sing N N 32 CUD C5 C4 sing N N 33 CUD C4 N3 doub N N 34 CUD H5 C5 sing N N 35 CUD C5 C6 doub N N 36 CUD H6 C6 sing N N 37 CUD C6 N1 sing N N 38 CUD CA N sing N N 39 CUD N H sing N N 40 CUD N H2 sing N N 41 CUD HA CA sing N N 42 CUD CA CB sing N N 43 CUD CA C sing N N 44 CUD N1 CB sing N N 45 CUD CB HB sing N N 46 CUD CB HBA sing N N 47 CUD HN4A N4 sing N N 48 CUD N4 HN4 sing N N 49 CUD OXT C sing N N 50 CUD C O doub N N 51 CUD OXT HXT sing N N 52 DLY N CA sing N N 53 DLY N H sing N N 54 DLY N H2 sing N N 55 DLY CA C sing N N 56 DLY CA CB sing N N 57 DLY CA HA sing N N 58 DLY C O doub N N 59 DLY C OXT sing N N 60 DLY CB CG sing N N 61 DLY CB HB2 sing N N 62 DLY CB HB3 sing N N 63 DLY CG CD sing N N 64 DLY CG HG2 sing N N 65 DLY CG HG3 sing N N 66 DLY CD CE sing N N 67 DLY CD HD2 sing N N 68 DLY CD HD3 sing N N 69 DLY CE NZ sing N N 70 DLY CE HE2 sing N N 71 DLY CE HE3 sing N N 72 DLY NZ HZ1 sing N N 73 DLY NZ HZ2 sing N N 74 DLY OXT HXT sing N N 75 HGL N1 C2 sing N N 76 HGL C2 N3 doub N N 77 HGL C2 N2 sing N N 78 HGL O6 C6 doub N N 79 HGL C5 C4 doub Y N 80 HGL C4 N9 sing Y N 81 HGL C4 N3 sing N N 82 HGL N7 C5 sing Y N 83 HGL C6 C5 sing N N 84 HGL C6 N1 sing N N 85 HGL N7 C8 doub Y N 86 HGL C8 H8 sing N N 87 HGL C8 N9 sing Y N 88 HGL CA N sing N N 89 HGL H N sing N N 90 HGL N H2 sing N N 91 HGL CB CA sing N N 92 HGL C CA sing N N 93 HGL CA HA sing N N 94 HGL CG CB sing N N 95 HGL HBA CB sing N N 96 HGL CB HB sing N N 97 HGL N9 CG sing N N 98 HGL HG CG sing N N 99 HGL CG HGA sing N N 100 HGL HN2A N2 sing N N 101 HGL N2 HN2 sing N N 102 HGL HN1 N1 sing N N 103 HGL OXT C sing N N 104 HGL O C doub N N 105 HGL OXT HXT sing N N 106 HOH O H1 sing N N 107 HOH O H2 sing N N 108 LHC N H sing N N 109 LHC N CA sing N N 110 LHC N H2 sing N N 111 LHC C CA sing N N 112 LHC CA HA sing N N 113 LHC CA CB sing N N 114 LHC HBA CB sing N N 115 LHC CB HB sing N N 116 LHC CB CG sing N N 117 LHC HG CG sing N N 118 LHC CG HGA sing N N 119 LHC CG N1 sing N N 120 LHC N1 C2 sing N N 121 LHC N1 C6 sing N N 122 LHC H6 C6 sing N N 123 LHC C6 C5 doub N N 124 LHC C5 C4 sing N N 125 LHC C5 H5 sing N N 126 LHC N3 C4 doub N N 127 LHC C4 N4 sing N N 128 LHC N4 HN4 sing N N 129 LHC N4 HN4A sing N N 130 LHC C2 N3 sing N N 131 LHC O2 C2 doub N N 132 LHC O C doub N N 133 LHC C OXT sing N N 134 LHC OXT HXT sing N N 135 LYS N CA sing N N 136 LYS N H sing N N 137 LYS N H2 sing N N 138 LYS CA C sing N N 139 LYS CA CB sing N N 140 LYS CA HA sing N N 141 LYS C O doub N N 142 LYS C OXT sing N N 143 LYS CB CG sing N N 144 LYS CB HB2 sing N N 145 LYS CB HB3 sing N N 146 LYS CG CD sing N N 147 LYS CG HG2 sing N N 148 LYS CG HG3 sing N N 149 LYS CD CE sing N N 150 LYS CD HD2 sing N N 151 LYS CD HD3 sing N N 152 LYS CE NZ sing N N 153 LYS CE HE2 sing N N 154 LYS CE HE3 sing N N 155 LYS NZ HZ1 sing N N 156 LYS NZ HZ2 sing N N 157 LYS NZ HZ3 sing N N 158 LYS OXT HXT sing N N 159 # _atom_sites.entry_id 3C1P _atom_sites.fract_transf_matrix[1][1] 0.038011 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006381 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032538 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030223 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_