HEADER RECOMBINATION/DNA 24-JAN-08 3C28 TITLE CRYSTAL STRUCTURE OF THE PRODUCT SYNAPSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOXP DNA, CHAIN C; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LOXP DNA, CHAIN D; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RECOMBINASE CRE; COMPND 11 CHAIN: A, B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: LOXP DNA FROM PHAGE P1; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: LOXP DNA FROM PHAGE P1; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: BACTERIOPHAGE P1; SOURCE 9 GENE: CRE KEYWDS SYNAPTIC COMPLEX, DNA INTEGRATION, DNA RECOMBINATION, RECOMBINATION- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,G.D.VAN DUYNE REVDAT 3 30-AUG-23 3C28 1 DBREF REVDAT 2 25-OCT-17 3C28 1 REMARK REVDAT 1 17-FEB-09 3C28 0 JRNL AUTH K.GHOSH,G.D.VAN DUYNE JRNL TITL DETAILED STUDY ON SYNAPSIS IN CRE-LOXP RECOMBINATION JRNL TITL 2 REACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4884 REMARK 3 NUCLEIC ACID ATOMS : 1394 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.521 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.336 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6523 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4115 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9087 ; 1.364 ; 2.224 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9962 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 6.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;30.554 ;22.213 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 897 ;15.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 67 ;15.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1008 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6232 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1227 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1678 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4630 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3015 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3093 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3963 ; 0.743 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1250 ; 0.070 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4855 ; 0.807 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4520 ; 1.173 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4232 ; 1.931 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1CRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM ACETATE, CALCIUM CHLORIDE, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.49550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.49550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.12700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.22650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.12700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.22650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.49550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.12700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.22650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.49550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.12700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.22650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 ARG A 187 REMARK 465 THR A 188 REMARK 465 ASP A 189 REMARK 465 GLY A 190 REMARK 465 GLY A 191 REMARK 465 ARG A 192 REMARK 465 ILE A 197 REMARK 465 GLY A 198 REMARK 465 ARG A 199 REMARK 465 THR A 200 REMARK 465 LYS A 201 REMARK 465 THR A 202 REMARK 465 LEU A 203 REMARK 465 VAL A 204 REMARK 465 SER A 205 REMARK 465 THR A 206 REMARK 465 ALA A 207 REMARK 465 GLY A 208 REMARK 465 VAL A 209 REMARK 465 GLU A 210 REMARK 465 LYS A 211 REMARK 465 SER A 279 REMARK 465 ASN B 327 REMARK 465 LEU B 328 REMARK 465 ASP B 329 REMARK 465 SER B 330 REMARK 465 GLU B 331 REMARK 465 THR B 332 REMARK 465 ALA B 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 44 O HOH C 47 2.04 REMARK 500 O ASP A 233 O HOH A 427 2.13 REMARK 500 O ARG B 326 O HOH B 480 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 10 O3' DG D 10 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 6 C6 - N1 - C2 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC C 6 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA C 15 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 DT C 16 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT C 16 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 18 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 DT C 20 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 23 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT C 23 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 24 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 25 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC C 27 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC C 27 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT D 11 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT D 13 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG D 15 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG D 15 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA D 17 O4' - C4' - C3' ANGL. DEV. = -4.2 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC D 20 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA D 30 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D 32 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 PRO B 65 C - N - CA ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 -1.53 -59.07 REMARK 500 MET A 149 32.53 -144.18 REMARK 500 ASN A 151 49.61 -95.04 REMARK 500 SER A 226 -70.60 -59.16 REMARK 500 ASP A 232 -41.87 174.51 REMARK 500 ALA A 275 131.60 -30.43 REMARK 500 ASP A 277 139.04 -39.77 REMARK 500 GLN A 281 -165.67 -108.23 REMARK 500 THR A 316 12.88 -142.94 REMARK 500 ASN A 319 -57.84 -21.30 REMARK 500 PHE B 64 -150.44 -85.77 REMARK 500 PRO B 65 103.93 -23.86 REMARK 500 SER B 186 -156.12 -112.09 REMARK 500 ASP B 277 168.39 -45.97 REMARK 500 VAL B 318 -70.66 -40.21 REMARK 500 ASN B 319 -65.95 -21.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 64 PRO B 65 -122.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XNS RELATED DB: PDB REMARK 900 RELATED ID: 2HOF RELATED DB: PDB REMARK 900 RELATED ID: 3C29 RELATED DB: PDB DBREF 3C28 C 2 35 PDB 3C28 3C28 2 35 DBREF 3C28 D 2 35 PDB 3C28 3C28 2 35 DBREF 3C28 A 20 341 UNP P06956 RECR_BPP1 20 341 DBREF 3C28 B 20 341 UNP P06956 RECR_BPP1 20 341 SEQRES 1 C 34 DA DT DA DA DC DT DT DC DG DT DA DT DA SEQRES 2 C 34 DA DT DG DT DA DT DG DC DT DA DT DA DC SEQRES 3 C 34 DG DA DA DG DT DT DA DT SEQRES 1 D 34 DA DT DA DA DC DT DT DC DG DT DA DT DA SEQRES 2 D 34 DG DC DA DT DA DC DA DT DT DA DT DA DC SEQRES 3 D 34 DG DA DA DG DT DT DA DT SEQRES 1 A 322 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 A 322 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 A 322 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 A 322 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 A 322 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 A 322 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 A 322 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 A 322 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 A 322 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 A 322 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 A 322 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 A 322 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU ARG ILE ALA SEQRES 13 A 322 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 A 322 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 A 322 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 A 322 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 A 322 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 A 322 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 A 322 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 A 322 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 A 322 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 A 322 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 A 322 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 A 322 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 A 322 THR GLY ALA MET VAL ARG LEU LEU GLU ASP SEQRES 1 B 322 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 B 322 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 B 322 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 B 322 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 B 322 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 B 322 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 B 322 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 B 322 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 B 322 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 B 322 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 B 322 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 B 322 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU ARG ILE ALA SEQRES 13 B 322 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 B 322 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 B 322 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 B 322 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 B 322 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 B 322 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 B 322 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 B 322 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 B 322 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 B 322 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 B 322 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 B 322 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 B 322 THR GLY ALA MET VAL ARG LEU LEU GLU ASP FORMUL 5 HOH *324(H2 O) HELIX 1 1 SER A 20 ASP A 33 1 14 HELIX 2 2 ARG A 34 PHE A 37 5 4 HELIX 3 3 SER A 38 ASN A 59 1 22 HELIX 4 4 GLU A 67 ARG A 81 1 15 HELIX 5 5 ALA A 84 ARG A 101 1 18 HELIX 6 6 ARG A 106 ASP A 109 5 4 HELIX 7 7 SER A 110 ALA A 127 1 18 HELIX 8 8 GLU A 138 ASN A 151 1 14 HELIX 9 9 ARG A 154 LEU A 171 1 18 HELIX 10 10 ARG A 173 ILE A 180 1 8 HELIX 11 11 ARG A 181 ILE A 185 5 5 HELIX 12 12 SER A 214 GLY A 229 1 16 HELIX 13 13 SER A 257 GLY A 274 1 18 HELIX 14 14 HIS A 289 ALA A 302 1 14 HELIX 15 15 SER A 305 GLY A 314 1 10 HELIX 16 16 VAL A 318 ARG A 326 1 9 HELIX 17 17 LEU A 328 GLU A 331 5 4 HELIX 18 18 THR A 332 ASP A 341 1 10 HELIX 19 19 SER B 20 ASP B 33 1 14 HELIX 20 20 ARG B 34 PHE B 37 5 4 HELIX 21 21 SER B 38 ASN B 59 1 22 HELIX 22 22 GLU B 67 ARG B 81 1 15 HELIX 23 23 ALA B 84 GLY B 103 1 20 HELIX 24 24 ARG B 106 ASP B 109 5 4 HELIX 25 25 SER B 110 ALA B 127 1 18 HELIX 26 26 GLU B 138 GLU B 150 1 13 HELIX 27 27 ARG B 154 LEU B 171 1 18 HELIX 28 28 ARG B 173 ILE B 180 1 8 HELIX 29 29 ARG B 181 LYS B 183 5 3 HELIX 30 30 SER B 214 GLY B 229 1 16 HELIX 31 31 VAL B 230 ASP B 233 5 4 HELIX 32 32 SER B 257 GLY B 274 1 18 HELIX 33 33 HIS B 289 ALA B 302 1 14 HELIX 34 34 SER B 305 GLY B 313 1 9 HELIX 35 35 VAL B 318 ARG B 326 1 9 HELIX 36 36 MET B 335 GLU B 340 1 6 SHEET 1 A 2 ARG A 241 VAL A 242 0 SHEET 2 A 2 ALA A 248 ALA A 249 -1 O ALA A 249 N ARG A 241 SHEET 1 B 3 ILE B 185 ARG B 187 0 SHEET 2 B 3 MET B 193 ILE B 197 -1 O LEU B 194 N SER B 186 SHEET 3 B 3 VAL B 209 ALA B 212 -1 O VAL B 209 N ILE B 197 CISPEP 1 PHE A 64 PRO A 65 0 -4.80 CRYST1 108.254 122.453 178.991 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005587 0.00000