HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JAN-08 3C2Q TITLE CRYSTAL STRUCTURE OF CONSERVED PUTATIVE LOR/SDH PROTEIN TITLE 2 FROM METHANOCOCCUS MARIPALUDIS S2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED CONSERVED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 74-415; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS S2; SOURCE 3 ORGANISM_TAXID: 267377; SOURCE 4 STRAIN: S2 / LL; SOURCE 5 GENE: MMP1218, GI:45047647; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PUTATIVE LOR/SDH, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.DUKE,M.GU,R.MULLIGAN,B.CONRAD,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 24-FEB-09 3C2Q 1 VERSN REVDAT 1 05-FEB-08 3C2Q 0 JRNL AUTH N.DUKE,M.GU,R.MULLIGAN,B.CONRAD,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF CONSERVED PUTATIVE LOR/SDH JRNL TITL 2 PROTEIN FROM METHANOCOCCUS MARIPALUDIS S2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 300 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.566 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5145 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6957 ; 1.479 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 661 ; 8.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;41.302 ;25.401 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;13.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.906 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3711 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2360 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3638 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3399 ; 1.328 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5356 ; 1.732 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 3.503 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1601 ; 5.014 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3C2Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB046266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979229 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.00M SODIUM CITRATE, 0.10M REMARK 280 IMIDAZOLE PH 8.0, 0.05M SODIUM FLUORIDE, CRYOPROTECTED WITH REMARK 280 25% V/V GLYCEROL AND SATURATED SODIUM CITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.86850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.79600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.79600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.43425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.79600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.79600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.30275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.79600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.79600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.43425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.79600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.79600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.30275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.86850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS REMARK 300 POLYPEPTIDE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15730 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 71 REMARK 465 ASN A 72 REMARK 465 LYS A 161 REMARK 465 SER A 162 REMARK 465 ARG A 163 REMARK 465 GLU A 164 REMARK 465 ALA A 165 REMARK 465 GLY A 166 REMARK 465 GLN A 167 REMARK 465 LEU A 168 REMARK 465 PHE A 169 REMARK 465 GLU A 170 REMARK 465 PHE A 171 REMARK 465 MSE A 172 REMARK 465 ASN A 173 REMARK 465 GLN A 414 REMARK 465 GLU A 415 REMARK 465 SER B 71 REMARK 465 ASN B 72 REMARK 465 ALA B 73 REMARK 465 ASN B 74 REMARK 465 ILE B 75 REMARK 465 PRO B 76 REMARK 465 GLU B 77 REMARK 465 GLN B 414 REMARK 465 GLU B 415 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 361 O HOH B 668 2.19 REMARK 500 OH TYR A 233 O HOH A 613 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 117 61.79 69.14 REMARK 500 ALA A 239 -153.12 -156.02 REMARK 500 SER A 351 69.46 35.32 REMARK 500 ARG A 385 37.06 -88.88 REMARK 500 ASP B 110 19.93 54.67 REMARK 500 ALA B 239 -168.08 -162.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 251 LEU A 252 -149.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 502 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87396.1 RELATED DB: TARGETDB DBREF 3C2Q A 74 415 UNP Q6LXX7 Q6LXX7_METMP 74 415 DBREF 3C2Q B 74 415 UNP Q6LXX7 Q6LXX7_METMP 74 415 SEQADV 3C2Q SER A 71 UNP Q6LXX7 EXPRESSION TAG SEQADV 3C2Q ASN A 72 UNP Q6LXX7 EXPRESSION TAG SEQADV 3C2Q ALA A 73 UNP Q6LXX7 EXPRESSION TAG SEQADV 3C2Q SER B 71 UNP Q6LXX7 EXPRESSION TAG SEQADV 3C2Q ASN B 72 UNP Q6LXX7 EXPRESSION TAG SEQADV 3C2Q ALA B 73 UNP Q6LXX7 EXPRESSION TAG SEQRES 1 A 345 SER ASN ALA ASN ILE PRO GLU ILE GLU ASN ALA ASN LEU SEQRES 2 A 345 LYS PRO ALA LEU LYS ASP SER VAL LEU PRO ASP GLY PHE SEQRES 3 A 345 TYR SER THR THR ASN HIS PRO THR HIS VAL LYS VAL ASN SEQRES 4 A 345 ASP GLU TRP ILE GLU VAL ALA ASN PRO LYS MSE ASP ALA SEQRES 5 A 345 VAL ILE VAL VAL TYR PRO GLU GLU LYS ARG ALA GLU THR SEQRES 6 A 345 LYS VAL ILE ARG LYS VAL LYS LYS GLY ASP PHE VAL LEU SEQRES 7 A 345 ILE GLY HIS ASN GLY ILE ARG VAL MSE PRO PRO GLU LYS SEQRES 8 A 345 SER ARG GLU ALA GLY GLN LEU PHE GLU PHE MSE ASN SER SEQRES 9 A 345 GLU VAL SER SER GLU LYS PRO LYS GLU ALA ILE ILE LYS SEQRES 10 A 345 ARG ILE ALA LYS GLU MSE HIS GLU ILE ARG GLU GLU TYR SEQRES 11 A 345 LYS LYS THR GLY THR GLY GLY ILE ALA ILE VAL GLY GLY SEQRES 12 A 345 PRO ALA ILE ILE HIS THR GLY GLY GLY PRO ALA LEU ALA SEQRES 13 A 345 LYS MSE VAL GLU LEU GLY TYR ILE GLN ALA ILE LEU ALA SEQRES 14 A 345 GLY ASN ALA LEU ALA THR HIS ASP ILE GLU SER ALA LEU SEQRES 15 A 345 TYR GLY THR SER LEU GLY VAL ASN ILE LYS THR ALA LYS SEQRES 16 A 345 PRO VAL THR GLY GLY HIS LYS HIS HIS ILE TYR ALA ILE SEQRES 17 A 345 ASN ALA ILE ASN ASP ALA GLY ASN ILE LYS ASN ALA VAL SEQRES 18 A 345 GLU SER GLY VAL LEU LYS GLU GLY ILE MSE TYR GLN CYS SEQRES 19 A 345 ILE LYS ASN ASN ILE PRO TYR VAL LEU ALA GLY SER ILE SEQRES 20 A 345 ARG ASP ASP GLY PRO ILE PRO ASP VAL ILE THR ASP SER SEQRES 21 A 345 MSE VAL ALA GLN ASP LYS MSE ARG THR THR VAL MSE ASP SEQRES 22 A 345 LYS LYS MSE VAL ILE MSE LEU SER THR LEU LEU HIS SER SEQRES 23 A 345 VAL ALA THR GLY ASN LEU MSE PRO SER TYR ILE LYS THR SEQRES 24 A 345 VAL CYS VAL ASP ILE GLN PRO SER THR VAL THR LYS LEU SEQRES 25 A 345 MSE ASP ARG GLY THR SER GLN ALA ILE GLY VAL VAL THR SEQRES 26 A 345 ASP VAL GLY VAL PHE LEU VAL LEU LEU LEU LYS GLU LEU SEQRES 27 A 345 GLU ARG LEU GLU LEU GLN GLU SEQRES 1 B 345 SER ASN ALA ASN ILE PRO GLU ILE GLU ASN ALA ASN LEU SEQRES 2 B 345 LYS PRO ALA LEU LYS ASP SER VAL LEU PRO ASP GLY PHE SEQRES 3 B 345 TYR SER THR THR ASN HIS PRO THR HIS VAL LYS VAL ASN SEQRES 4 B 345 ASP GLU TRP ILE GLU VAL ALA ASN PRO LYS MSE ASP ALA SEQRES 5 B 345 VAL ILE VAL VAL TYR PRO GLU GLU LYS ARG ALA GLU THR SEQRES 6 B 345 LYS VAL ILE ARG LYS VAL LYS LYS GLY ASP PHE VAL LEU SEQRES 7 B 345 ILE GLY HIS ASN GLY ILE ARG VAL MSE PRO PRO GLU LYS SEQRES 8 B 345 SER ARG GLU ALA GLY GLN LEU PHE GLU PHE MSE ASN SER SEQRES 9 B 345 GLU VAL SER SER GLU LYS PRO LYS GLU ALA ILE ILE LYS SEQRES 10 B 345 ARG ILE ALA LYS GLU MSE HIS GLU ILE ARG GLU GLU TYR SEQRES 11 B 345 LYS LYS THR GLY THR GLY GLY ILE ALA ILE VAL GLY GLY SEQRES 12 B 345 PRO ALA ILE ILE HIS THR GLY GLY GLY PRO ALA LEU ALA SEQRES 13 B 345 LYS MSE VAL GLU LEU GLY TYR ILE GLN ALA ILE LEU ALA SEQRES 14 B 345 GLY ASN ALA LEU ALA THR HIS ASP ILE GLU SER ALA LEU SEQRES 15 B 345 TYR GLY THR SER LEU GLY VAL ASN ILE LYS THR ALA LYS SEQRES 16 B 345 PRO VAL THR GLY GLY HIS LYS HIS HIS ILE TYR ALA ILE SEQRES 17 B 345 ASN ALA ILE ASN ASP ALA GLY ASN ILE LYS ASN ALA VAL SEQRES 18 B 345 GLU SER GLY VAL LEU LYS GLU GLY ILE MSE TYR GLN CYS SEQRES 19 B 345 ILE LYS ASN ASN ILE PRO TYR VAL LEU ALA GLY SER ILE SEQRES 20 B 345 ARG ASP ASP GLY PRO ILE PRO ASP VAL ILE THR ASP SER SEQRES 21 B 345 MSE VAL ALA GLN ASP LYS MSE ARG THR THR VAL MSE ASP SEQRES 22 B 345 LYS LYS MSE VAL ILE MSE LEU SER THR LEU LEU HIS SER SEQRES 23 B 345 VAL ALA THR GLY ASN LEU MSE PRO SER TYR ILE LYS THR SEQRES 24 B 345 VAL CYS VAL ASP ILE GLN PRO SER THR VAL THR LYS LEU SEQRES 25 B 345 MSE ASP ARG GLY THR SER GLN ALA ILE GLY VAL VAL THR SEQRES 26 B 345 ASP VAL GLY VAL PHE LEU VAL LEU LEU LEU LYS GLU LEU SEQRES 27 B 345 GLU ARG LEU GLU LEU GLN GLU MODRES 3C2Q MSE A 120 MET SELENOMETHIONINE MODRES 3C2Q MSE A 157 MET SELENOMETHIONINE MODRES 3C2Q MSE A 193 MET SELENOMETHIONINE MODRES 3C2Q MSE A 228 MET SELENOMETHIONINE MODRES 3C2Q MSE A 301 MET SELENOMETHIONINE MODRES 3C2Q MSE A 331 MET SELENOMETHIONINE MODRES 3C2Q MSE A 337 MET SELENOMETHIONINE MODRES 3C2Q MSE A 342 MET SELENOMETHIONINE MODRES 3C2Q MSE A 346 MET SELENOMETHIONINE MODRES 3C2Q MSE A 349 MET SELENOMETHIONINE MODRES 3C2Q MSE A 363 MET SELENOMETHIONINE MODRES 3C2Q MSE A 383 MET SELENOMETHIONINE MODRES 3C2Q MSE B 120 MET SELENOMETHIONINE MODRES 3C2Q MSE B 157 MET SELENOMETHIONINE MODRES 3C2Q MSE B 172 MET SELENOMETHIONINE MODRES 3C2Q MSE B 193 MET SELENOMETHIONINE MODRES 3C2Q MSE B 228 MET SELENOMETHIONINE MODRES 3C2Q MSE B 301 MET SELENOMETHIONINE MODRES 3C2Q MSE B 331 MET SELENOMETHIONINE MODRES 3C2Q MSE B 337 MET SELENOMETHIONINE MODRES 3C2Q MSE B 342 MET SELENOMETHIONINE MODRES 3C2Q MSE B 346 MET SELENOMETHIONINE MODRES 3C2Q MSE B 349 MET SELENOMETHIONINE MODRES 3C2Q MSE B 363 MET SELENOMETHIONINE MODRES 3C2Q MSE B 383 MET SELENOMETHIONINE HET MSE A 120 8 HET MSE A 157 8 HET MSE A 193 8 HET MSE A 228 8 HET MSE A 301 8 HET MSE A 331 8 HET MSE A 337 8 HET MSE A 342 8 HET MSE A 346 8 HET MSE A 349 8 HET MSE A 363 8 HET MSE A 383 8 HET MSE B 120 8 HET MSE B 157 8 HET MSE B 172 8 HET MSE B 193 8 HET MSE B 228 8 HET MSE B 301 8 HET MSE B 331 8 HET MSE B 337 8 HET MSE B 342 8 HET MSE B 346 8 HET MSE B 349 8 HET MSE B 363 8 HET MSE B 383 8 HET NI A 500 1 HET IMD A 501 5 HET IMD A 502 5 HET IMD B 502 5 HET IMD B 503 5 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM IMD IMIDAZOLE FORMUL 1 MSE 25(C5 H11 N O2 SE) FORMUL 3 NI NI 2+ FORMUL 4 IMD 4(C3 H5 N2 1+) FORMUL 8 HOH *320(H2 O) HELIX 1 1 ILE A 75 GLU A 79 5 5 HELIX 2 2 PRO A 128 LYS A 131 5 4 HELIX 3 3 VAL A 137 VAL A 141 5 5 HELIX 4 4 PRO A 181 GLY A 204 1 24 HELIX 5 5 PRO A 214 THR A 219 1 6 HELIX 6 6 GLY A 221 LEU A 231 1 11 HELIX 7 7 ASN A 241 GLY A 254 1 14 HELIX 8 8 GLY A 269 HIS A 271 5 3 HELIX 9 9 LYS A 272 GLY A 285 1 14 HELIX 10 10 ASN A 286 SER A 293 1 8 HELIX 11 11 GLY A 299 ASN A 307 1 9 HELIX 12 12 ASP A 329 MSE A 342 1 14 HELIX 13 13 THR A 352 ASN A 361 1 10 HELIX 14 14 GLN A 375 ARG A 385 1 11 HELIX 15 15 ASP A 396 LEU A 413 1 18 HELIX 16 16 PRO B 128 LYS B 131 5 4 HELIX 17 17 VAL B 137 VAL B 141 5 5 HELIX 18 18 PRO B 181 GLY B 204 1 24 HELIX 19 19 PRO B 214 THR B 219 1 6 HELIX 20 20 GLY B 221 LEU B 231 1 11 HELIX 21 21 ASN B 241 GLY B 254 1 14 HELIX 22 22 GLY B 269 HIS B 271 5 3 HELIX 23 23 LYS B 272 GLY B 285 1 14 HELIX 24 24 ASN B 286 SER B 293 1 8 HELIX 25 25 GLY B 299 ASN B 308 1 10 HELIX 26 26 ASP B 329 MSE B 342 1 14 HELIX 27 27 THR B 352 MSE B 363 1 12 HELIX 28 28 GLN B 375 ARG B 385 1 11 HELIX 29 29 ASP B 396 LEU B 413 1 18 SHEET 1 A 7 ASN A 82 PRO A 85 0 SHEET 2 A 7 PHE A 146 ILE A 149 -1 O ILE A 149 N ASN A 82 SHEET 3 A 7 VAL A 123 TYR A 127 -1 N VAL A 126 O PHE A 146 SHEET 4 A 7 ARG A 132 LYS A 136 -1 O LYS A 136 N VAL A 123 SHEET 5 A 7 GLU A 111 ALA A 116 1 N ALA A 116 O ALA A 133 SHEET 6 A 7 THR A 104 VAL A 108 -1 N VAL A 106 O ILE A 113 SHEET 7 A 7 ILE A 154 VAL A 156 -1 O ARG A 155 N HIS A 105 SHEET 1 B 6 TYR A 311 ALA A 314 0 SHEET 2 B 6 ALA A 236 GLY A 240 1 N ALA A 239 O VAL A 312 SHEET 3 B 6 ILE A 208 GLY A 212 1 N ILE A 210 O LEU A 238 SHEET 4 B 6 MSE A 346 LEU A 350 1 O LEU A 350 N VAL A 211 SHEET 5 B 6 LYS A 368 ASP A 373 1 O VAL A 370 N MSE A 349 SHEET 6 B 6 ALA A 390 VAL A 394 1 O VAL A 393 N CYS A 371 SHEET 1 C 2 THR A 255 SER A 256 0 SHEET 2 C 2 VAL A 259 ASN A 260 -1 O VAL A 259 N SER A 256 SHEET 1 D 7 ASN B 82 PRO B 85 0 SHEET 2 D 7 PHE B 146 ILE B 149 -1 O VAL B 147 N LYS B 84 SHEET 3 D 7 VAL B 123 TYR B 127 -1 N VAL B 126 O PHE B 146 SHEET 4 D 7 ARG B 132 LYS B 136 -1 O GLU B 134 N VAL B 125 SHEET 5 D 7 GLU B 111 ALA B 116 1 N ALA B 116 O ALA B 133 SHEET 6 D 7 THR B 104 VAL B 108 -1 N VAL B 108 O GLU B 111 SHEET 7 D 7 ILE B 154 VAL B 156 -1 O ARG B 155 N HIS B 105 SHEET 1 E 6 TYR B 311 ALA B 314 0 SHEET 2 E 6 ALA B 236 GLY B 240 1 N ALA B 239 O ALA B 314 SHEET 3 E 6 ILE B 208 GLY B 212 1 N ILE B 210 O LEU B 238 SHEET 4 E 6 MSE B 346 LEU B 350 1 O LEU B 350 N VAL B 211 SHEET 5 E 6 LYS B 368 ASP B 373 1 O VAL B 370 N MSE B 349 SHEET 6 E 6 ILE B 391 VAL B 394 1 O VAL B 393 N CYS B 371 SHEET 1 F 2 THR B 255 SER B 256 0 SHEET 2 F 2 VAL B 259 ASN B 260 -1 O VAL B 259 N SER B 256 LINK C LYS A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N ASP A 121 1555 1555 1.34 LINK C VAL A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N PRO A 158 1555 1555 1.34 LINK C GLU A 192 N MSE A 193 1555 1555 1.34 LINK C MSE A 193 N HIS A 194 1555 1555 1.33 LINK C LYS A 227 N MSE A 228 1555 1555 1.35 LINK C MSE A 228 N VAL A 229 1555 1555 1.33 LINK C ILE A 300 N MSE A 301 1555 1555 1.32 LINK C MSE A 301 N TYR A 302 1555 1555 1.32 LINK C SER A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N VAL A 332 1555 1555 1.33 LINK C LYS A 336 N MSE A 337 1555 1555 1.33 LINK C MSE A 337 N ARG A 338 1555 1555 1.34 LINK C VAL A 341 N MSE A 342 1555 1555 1.33 LINK C MSE A 342 N ASP A 343 1555 1555 1.33 LINK C LYS A 345 N MSE A 346 1555 1555 1.34 LINK C MSE A 346 N VAL A 347 1555 1555 1.34 LINK C ILE A 348 N MSE A 349 1555 1555 1.33 LINK C MSE A 349 N LEU A 350 1555 1555 1.32 LINK C LEU A 362 N MSE A 363 1555 1555 1.32 LINK C MSE A 363 N PRO A 364 1555 1555 1.34 LINK C LEU A 382 N MSE A 383 1555 1555 1.33 LINK C MSE A 383 N ASP A 384 1555 1555 1.34 LINK C LYS B 119 N MSE B 120 1555 1555 1.34 LINK C MSE B 120 N ASP B 121 1555 1555 1.34 LINK C VAL B 156 N MSE B 157 1555 1555 1.33 LINK C MSE B 157 N PRO B 158 1555 1555 1.34 LINK C PHE B 171 N MSE B 172 1555 1555 1.34 LINK C MSE B 172 N ASN B 173 1555 1555 1.32 LINK C GLU B 192 N MSE B 193 1555 1555 1.33 LINK C MSE B 193 N HIS B 194 1555 1555 1.33 LINK C LYS B 227 N MSE B 228 1555 1555 1.34 LINK C MSE B 228 N VAL B 229 1555 1555 1.33 LINK C ILE B 300 N MSE B 301 1555 1555 1.33 LINK C MSE B 301 N TYR B 302 1555 1555 1.33 LINK C SER B 330 N MSE B 331 1555 1555 1.34 LINK C MSE B 331 N VAL B 332 1555 1555 1.33 LINK C LYS B 336 N MSE B 337 1555 1555 1.34 LINK C MSE B 337 N ARG B 338 1555 1555 1.33 LINK C VAL B 341 N MSE B 342 1555 1555 1.33 LINK C MSE B 342 N ASP B 343 1555 1555 1.33 LINK C LYS B 345 N MSE B 346 1555 1555 1.33 LINK C MSE B 346 N VAL B 347 1555 1555 1.33 LINK C ILE B 348 N MSE B 349 1555 1555 1.33 LINK C MSE B 349 N LEU B 350 1555 1555 1.35 LINK C LEU B 362 N MSE B 363 1555 1555 1.33 LINK C MSE B 363 N PRO B 364 1555 1555 1.34 LINK C LEU B 382 N MSE B 383 1555 1555 1.32 LINK C MSE B 383 N ASP B 384 1555 1555 1.34 CISPEP 1 GLY A 321 PRO A 322 0 4.68 SITE 1 AC1 2 SER A 388 ALA A 390 SITE 1 AC2 6 SER A 351 ILE A 374 THR A 395 ASP A 396 SITE 2 AC2 6 VAL A 397 SER B 178 SITE 1 AC3 4 SER A 98 ASP A 121 ALA A 122 ILE B 275 SITE 1 AC4 7 SER A 178 HOH A 642 THR B 219 SER B 351 SITE 2 AC4 7 ILE B 374 ASP B 396 VAL B 397 SITE 1 AC5 4 HIS A 151 TYR B 97 THR B 100 LEU B 168 CRYST1 119.592 119.592 161.737 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006183 0.00000