HEADER IMMUNE SYSTEM 25-JAN-08 3C2S TITLE STRUCTURAL CHARACTERIZATION OF A HUMAN FC FRAGMENT ENGINEERED FOR LACK TITLE 2 OF EFFECTOR FUNCTIONS CAVEAT 3C2S FUC B 9 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGHM PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ANTIBODY FC FRAGMENT, RESIDUES 256-480; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FC FRAGMENT, MUTANT, EFFECTOR FUNCTION, RECEPTOR, PROTEIN BINDING, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.OGANESYAN,H.WU,W.F.DALL'ACQUA REVDAT 7 30-AUG-23 3C2S 1 REMARK REVDAT 6 20-OCT-21 3C2S 1 SEQADV HETSYN REVDAT 5 29-JUL-20 3C2S 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 3C2S 1 VERSN REVDAT 3 24-FEB-09 3C2S 1 VERSN REVDAT 2 16-SEP-08 3C2S 1 COMPND DBREF REMARK HEADER REVDAT 1 19-AUG-08 3C2S 0 JRNL AUTH V.OGANESYAN,C.GAO,L.SHIRINIAN,H.WU,W.F.DALL'ACQUA JRNL TITL STRUCTURAL CHARACTERIZATION OF A HUMAN FC FRAGMENT JRNL TITL 2 ENGINEERED FOR LACK OF EFFECTOR FUNCTIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 700 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18560159 JRNL DOI 10.1107/S0907444908007877 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 11994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.83000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : 2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.327 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1845 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2527 ; 1.482 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;33.844 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;17.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1323 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 714 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1211 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.013 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.267 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1090 ; 0.502 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1737 ; 0.773 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 850 ; 1.312 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 2.117 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3389 24.1913 -4.5478 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: 0.0920 REMARK 3 T33: 0.3541 T12: 0.0433 REMARK 3 T13: -0.0938 T23: -0.3463 REMARK 3 L TENSOR REMARK 3 L11: 5.5174 L22: 6.9851 REMARK 3 L33: 1.3110 L12: 0.6985 REMARK 3 L13: -0.3877 L23: 1.4474 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.9714 S13: 1.6061 REMARK 3 S21: 0.4006 S22: 0.0112 S23: -0.5043 REMARK 3 S31: -0.2230 S32: -0.0083 S33: -0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2355 28.7737 -13.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.0438 REMARK 3 T33: 0.6367 T12: 0.0309 REMARK 3 T13: -0.1209 T23: -0.1743 REMARK 3 L TENSOR REMARK 3 L11: 2.0696 L22: 7.3867 REMARK 3 L33: 3.9900 L12: 0.5828 REMARK 3 L13: -0.3193 L23: 2.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.3128 S12: -0.3347 S13: 1.6116 REMARK 3 S21: -0.6048 S22: 0.4400 S23: 0.4114 REMARK 3 S31: -1.6055 S32: 0.0271 S33: -0.1271 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6741 -9.9102 -17.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: -0.0558 REMARK 3 T33: 0.2412 T12: 0.0130 REMARK 3 T13: -0.0465 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 5.9397 L22: 3.4770 REMARK 3 L33: 1.3027 L12: -0.2675 REMARK 3 L13: -2.7731 L23: 0.2922 REMARK 3 S TENSOR REMARK 3 S11: 0.1902 S12: 0.1053 S13: -2.1005 REMARK 3 S21: -0.2927 S22: -0.5125 S23: -0.3505 REMARK 3 S31: 0.2359 S32: -0.0277 S33: 0.3223 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 359 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2651 -3.5914 -12.2859 REMARK 3 T TENSOR REMARK 3 T11: -0.1689 T22: -0.0639 REMARK 3 T33: -0.1638 T12: 0.0043 REMARK 3 T13: 0.0241 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 12.4510 L22: 2.7911 REMARK 3 L33: 2.9332 L12: 0.0470 REMARK 3 L13: 0.1119 L23: -0.2768 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: -1.2217 S13: -1.1281 REMARK 3 S21: 0.1580 S22: 0.0409 S23: -0.1830 REMARK 3 S31: 0.0059 S32: 0.2154 S33: 0.0937 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 404 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4718 -9.7512 -9.1313 REMARK 3 T TENSOR REMARK 3 T11: -0.0158 T22: 0.1994 REMARK 3 T33: 0.1938 T12: 0.0293 REMARK 3 T13: 0.0582 T23: 0.3819 REMARK 3 L TENSOR REMARK 3 L11: 13.1107 L22: 0.0678 REMARK 3 L33: 1.6932 L12: 0.9209 REMARK 3 L13: -1.5605 L23: -0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -2.3239 S13: -2.6014 REMARK 3 S21: -0.0410 S22: -0.1484 S23: -0.1293 REMARK 3 S31: 0.3788 S32: 0.2592 S33: 0.3017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12617 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2DTQ, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 3350, 200 MM ZN ACETATE, 0.1 M REMARK 280 IMIDAZOLE MALATE, 5% GLYCEROL, PH 8.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.73650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.73650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.08900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.65050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.08900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.65050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.73650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.08900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.65050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.73650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.08900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.65050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.17800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.73650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 450 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 484 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 PHE A 234 REMARK 465 GLU A 235 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GAL B 6 O HOH A 495 2.05 REMARK 500 O TRP A 381 O HOH A 478 2.16 REMARK 500 O HOH A 471 O HOH A 499 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 267 -163.55 -70.48 REMARK 500 TYR A 296 40.39 -68.18 REMARK 500 ASN A 297 19.11 -144.40 REMARK 500 SER A 298 56.57 73.96 REMARK 500 LYS A 326 74.00 -65.52 REMARK 500 ALA A 327 -31.97 -175.32 REMARK 500 PRO A 353 157.39 -47.76 REMARK 500 MET A 358 41.09 -76.16 REMARK 500 ASN A 384 71.98 12.53 REMARK 500 ASN A 421 143.13 -32.11 REMARK 500 ASN A 434 27.06 49.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 448 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 310 NE2 REMARK 620 2 HIS A 435 NE2 103.3 REMARK 620 3 HOH A 471 O 113.9 98.7 REMARK 620 4 HOH A 485 O 106.2 99.7 130.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 318 OE1 REMARK 620 2 GLU A 318 OE2 58.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 449 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 472 O REMARK 620 2 HOH A 498 O 170.4 REMARK 620 N 1 DBREF 3C2S A 223 447 UNP Q6PYX1 Q6PJF1_HUMAN 256 480 SEQADV 3C2S PHE A 234 UNP Q6PJF1 LEU 267 ENGINEERED MUTATION SEQADV 3C2S GLU A 235 UNP Q6PJF1 LEU 268 ENGINEERED MUTATION SEQADV 3C2S SER A 331 UNP Q6PJF1 PRO 364 ENGINEERED MUTATION SEQRES 1 A 225 THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU PHE GLU SEQRES 2 A 225 GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS SEQRES 3 A 225 ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS SEQRES 4 A 225 VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS SEQRES 5 A 225 PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA SEQRES 6 A 225 LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR SEQRES 7 A 225 ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP SEQRES 8 A 225 LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS SEQRES 9 A 225 ALA LEU PRO ALA SER ILE GLU LYS THR ILE SER LYS ALA SEQRES 10 A 225 LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO SEQRES 11 A 225 PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU SEQRES 12 A 225 THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA SEQRES 13 A 225 VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR SEQRES 14 A 225 LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE SEQRES 15 A 225 PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP SEQRES 16 A 225 GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU SEQRES 17 A 225 ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 18 A 225 SER PRO GLY LYS MODRES 3C2S ASN A 297 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET GAL B 6 11 HET MAN B 7 11 HET NAG B 8 14 HET FUC B 9 10 HET ZN A 448 1 HET ZN A 449 1 HET ZN A 450 1 HET ZN A 451 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 GAL C6 H12 O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *75(H2 O) HELIX 1 1 LYS A 246 MET A 252 1 7 HELIX 2 2 LEU A 309 ASN A 315 1 7 HELIX 3 3 LYS A 414 GLY A 420 1 7 HELIX 4 4 LEU A 432 ASN A 434 5 3 SHEET 1 A 4 SER A 239 PHE A 243 0 SHEET 2 A 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 A 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 A 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 B 4 SER A 239 PHE A 243 0 SHEET 2 B 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 B 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 B 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 C 4 VAL A 282 GLU A 283 0 SHEET 2 C 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 C 4 TYR A 319 SER A 324 -1 O LYS A 322 N ASN A 276 SHEET 4 C 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 D 4 GLN A 347 LEU A 351 0 SHEET 2 D 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 D 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 D 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 E 4 GLN A 347 LEU A 351 0 SHEET 2 E 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 E 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 E 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 F 4 GLN A 386 GLU A 388 0 SHEET 2 F 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 F 4 PHE A 423 MET A 428 -1 O MET A 428 N ALA A 378 SHEET 4 F 4 TYR A 436 LEU A 441 -1 O LEU A 441 N PHE A 423 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 9 1555 1555 1.39 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.44 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.43 LINK O4 NAG B 5 C1 GAL B 6 1555 1555 1.44 LINK O2 MAN B 7 C1 NAG B 8 1555 1555 1.45 LINK NE2 HIS A 310 ZN ZN A 448 1555 1555 1.99 LINK OE1 GLU A 318 ZN ZN A 450 1555 1555 2.16 LINK OE2 GLU A 318 ZN ZN A 450 1555 1555 2.26 LINK NE2 HIS A 435 ZN ZN A 448 1555 1555 2.05 LINK ZN ZN A 448 O HOH A 471 1555 1555 2.17 LINK ZN ZN A 448 O HOH A 485 1555 1555 2.26 LINK ZN ZN A 449 O HOH A 472 1555 1555 2.09 LINK ZN ZN A 449 O HOH A 498 1555 1555 2.29 CISPEP 1 TYR A 373 PRO A 374 0 -7.55 CRYST1 50.178 147.301 75.473 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013250 0.00000