data_3C3M # _entry.id 3C3M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3C3M RCSB RCSB046298 WWPDB D_1000046298 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11010e _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3C3M _pdbx_database_status.recvd_initial_deposition_date 2008-01-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Patskovsky, Y.' 1 ? 'Ramagopal, U.A.' 2 ? 'Toro, R.' 3 ? 'Meyer, A.J.' 4 ? 'Dickey, M.' 5 ? 'Chang, S.' 6 ? 'Groshong, C.' 7 ? 'Sauder, J.M.' 8 0000-0002-0254-4955 'Burley, S.K.' 9 0000-0002-2487-9713 'Almo, S.C.' 10 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 11 ? # _citation.id primary _citation.title 'Crystal structure of the N-terminal domain of response regulator receiver protein from Methanoculleus marisnigri JR1.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patskovsky, Y.' 1 ? primary 'Ramagopal, U.A.' 2 ? primary 'Toro, R.' 3 ? primary 'Meyer, A.J.' 4 ? primary 'Dickey, M.' 5 ? primary 'Chang, S.' 6 ? primary 'Groshong, C.' 7 ? primary 'Sauder, J.M.' 8 ? primary 'Burley, S.K.' 9 0000-0002-2487-9713 primary 'Almo, S.C.' 10 ? # _cell.entry_id 3C3M _cell.length_a 57.744 _cell.length_b 57.744 _cell.length_c 93.233 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C3M _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Response regulator receiver protein' 16048.131 1 ? ? 'N-terminal fragment: Residues 2-128' ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLYTILVVDDSP(MSE)IVDVFVT(MSE)LERGGYRPITAFSGEECLEALNATPPDLVLLDI(MSE)(MSE)EP (MSE)DGWETLERIKTDPATRDIPVL(MSE)LTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHSIAADE GHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHSIAADEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11010e # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 TYR n 1 5 THR n 1 6 ILE n 1 7 LEU n 1 8 VAL n 1 9 VAL n 1 10 ASP n 1 11 ASP n 1 12 SER n 1 13 PRO n 1 14 MSE n 1 15 ILE n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 PHE n 1 20 VAL n 1 21 THR n 1 22 MSE n 1 23 LEU n 1 24 GLU n 1 25 ARG n 1 26 GLY n 1 27 GLY n 1 28 TYR n 1 29 ARG n 1 30 PRO n 1 31 ILE n 1 32 THR n 1 33 ALA n 1 34 PHE n 1 35 SER n 1 36 GLY n 1 37 GLU n 1 38 GLU n 1 39 CYS n 1 40 LEU n 1 41 GLU n 1 42 ALA n 1 43 LEU n 1 44 ASN n 1 45 ALA n 1 46 THR n 1 47 PRO n 1 48 PRO n 1 49 ASP n 1 50 LEU n 1 51 VAL n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 ILE n 1 56 MSE n 1 57 MSE n 1 58 GLU n 1 59 PRO n 1 60 MSE n 1 61 ASP n 1 62 GLY n 1 63 TRP n 1 64 GLU n 1 65 THR n 1 66 LEU n 1 67 GLU n 1 68 ARG n 1 69 ILE n 1 70 LYS n 1 71 THR n 1 72 ASP n 1 73 PRO n 1 74 ALA n 1 75 THR n 1 76 ARG n 1 77 ASP n 1 78 ILE n 1 79 PRO n 1 80 VAL n 1 81 LEU n 1 82 MSE n 1 83 LEU n 1 84 THR n 1 85 ALA n 1 86 LYS n 1 87 PRO n 1 88 LEU n 1 89 THR n 1 90 PRO n 1 91 GLU n 1 92 GLU n 1 93 ALA n 1 94 ASN n 1 95 GLU n 1 96 TYR n 1 97 GLY n 1 98 SER n 1 99 TYR n 1 100 ILE n 1 101 GLU n 1 102 ASP n 1 103 TYR n 1 104 ILE n 1 105 LEU n 1 106 LYS n 1 107 PRO n 1 108 THR n 1 109 THR n 1 110 HIS n 1 111 HIS n 1 112 GLN n 1 113 LEU n 1 114 TYR n 1 115 GLU n 1 116 ALA n 1 117 ILE n 1 118 GLU n 1 119 HIS n 1 120 VAL n 1 121 LEU n 1 122 ALA n 1 123 ARG n 1 124 ARG n 1 125 HIS n 1 126 SER n 1 127 ILE n 1 128 ALA n 1 129 ALA n 1 130 ASP n 1 131 GLU n 1 132 GLY n 1 133 HIS n 1 134 HIS n 1 135 HIS n 1 136 HIS n 1 137 HIS n 1 138 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanoculleus _entity_src_gen.pdbx_gene_src_gene 'Memar_0295, Memar_0309' _entity_src_gen.gene_src_species 'Methanoculleus marisnigri' _entity_src_gen.gene_src_strain 'JR1 / DSM 1498' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanoculleus marisnigri JR1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 368407 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 35101 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector pET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A3CS79_METMJ _struct_ref.pdbx_db_accession A3CS79 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLML TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHSIAAD ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3C3M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A3CS79 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 128 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3C3M MSE A 1 ? UNP A3CS79 ? ? 'expression tag' 0 1 1 3C3M SER A 2 ? UNP A3CS79 ? ? 'expression tag' 1 2 1 3C3M LEU A 3 ? UNP A3CS79 ? ? 'expression tag' 2 3 1 3C3M GLU A 131 ? UNP A3CS79 ? ? 'expression tag' 130 4 1 3C3M GLY A 132 ? UNP A3CS79 ? ? 'expression tag' 131 5 1 3C3M HIS A 133 ? UNP A3CS79 ? ? 'expression tag' 132 6 1 3C3M HIS A 134 ? UNP A3CS79 ? ? 'expression tag' 133 7 1 3C3M HIS A 135 ? UNP A3CS79 ? ? 'expression tag' 134 8 1 3C3M HIS A 136 ? UNP A3CS79 ? ? 'expression tag' 135 9 1 3C3M HIS A 137 ? UNP A3CS79 ? ? 'expression tag' 136 10 1 3C3M HIS A 138 ? UNP A3CS79 ? ? 'expression tag' 137 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3C3M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris pH 5.5, 2.0M Ammonium sulfate, 10% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 90.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-01-28 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97930 # _reflns.entry_id 3C3M _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 20448 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.5000 _reflns.B_iso_Wilson_estimate 22.923 _reflns.pdbx_redundancy 5.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.63 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.600 _reflns_shell.pdbx_redundancy 5.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3C3M _refine.ls_number_reflns_obs 19747 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.88 _refine.ls_R_factor_obs 0.16471 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16378 _refine.ls_R_factor_R_free 0.19318 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.2 _refine.ls_number_reflns_R_free 654 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 29.377 _refine.aniso_B[1][1] 1.31 _refine.aniso_B[2][2] 1.31 _refine.aniso_B[3][3] -1.96 _refine.aniso_B[1][2] 0.65 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.081 _refine.pdbx_overall_ESU_R_Free 0.083 _refine.overall_SU_ML 0.057 _refine.overall_SU_B 1.716 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 978 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1147 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1108 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.406 2.007 ? 1529 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.323 5.000 ? 146 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.433 24.375 ? 48 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.007 15.000 ? 198 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.535 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 183 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 831 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.175 0.300 ? 513 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.500 ? 755 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.169 0.500 ? 202 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.153 0.300 ? 57 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.177 0.500 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.335 2.000 ? 695 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.197 3.000 ? 1115 'X-RAY DIFFRACTION' ? r_scbond_it 5.347 3.000 ? 467 'X-RAY DIFFRACTION' ? r_scangle_it 7.457 5.000 ? 401 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 1408 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs 98.57 _refine_ls_shell.R_factor_R_free 0.201 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3C3M _struct.title 'Crystal structure of the N-terminal domain of response regulator receiver protein from Methanoculleus marisnigri JR1' _struct.pdbx_descriptor 'Response regulator receiver protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C3M _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics, NYSGXRC, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? GLY A 26 ? SER A 11 GLY A 25 1 ? 15 HELX_P HELX_P2 2 SER A 35 ? THR A 46 ? SER A 34 THR A 45 1 ? 12 HELX_P HELX_P3 3 ASP A 61 ? ASP A 72 ? ASP A 60 ASP A 71 1 ? 12 HELX_P HELX_P4 4 THR A 89 ? TYR A 96 ? THR A 88 TYR A 95 1 ? 8 HELX_P HELX_P5 5 THR A 108 ? ALA A 122 ? THR A 107 ALA A 121 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 13 C ? ? ? 1_555 A MSE 14 N ? ? A PRO 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A ILE 15 N ? ? A MSE 13 A ILE 14 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A THR 21 C ? ? ? 1_555 A MSE 22 N ? ? A THR 20 A MSE 21 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MSE 22 C ? ? ? 1_555 A LEU 23 N ? ? A MSE 21 A LEU 22 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A ILE 55 C ? ? ? 1_555 A MSE 56 N A ? A ILE 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale6 covale both ? A ILE 55 C ? ? ? 1_555 A MSE 56 N B ? A ILE 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale7 covale both ? A MSE 56 C A ? ? 1_555 A MSE 57 N A ? A MSE 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? A MSE 56 C B ? ? 1_555 A MSE 57 N B ? A MSE 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? A MSE 57 C A ? ? 1_555 A GLU 58 N ? ? A MSE 56 A GLU 57 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A MSE 57 C B ? ? 1_555 A GLU 58 N ? ? A MSE 56 A GLU 57 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale11 covale both ? A PRO 59 C ? ? ? 1_555 A MSE 60 N ? ? A PRO 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? A MSE 60 C ? ? ? 1_555 A ASP 61 N ? ? A MSE 59 A ASP 60 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? A LEU 81 C ? ? ? 1_555 A MSE 82 N ? ? A LEU 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? A MSE 82 C ? ? ? 1_555 A LEU 83 N ? ? A MSE 81 A LEU 82 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 58 A . ? GLU 57 A PRO 59 A ? PRO 58 A 1 5.69 2 GLU 58 A . ? GLU 57 A PRO 59 A ? PRO 58 A 1 3.74 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 29 ? ALA A 33 ? ARG A 28 ALA A 32 A 2 THR A 5 ? VAL A 9 ? THR A 4 VAL A 8 A 3 LEU A 50 ? ASP A 54 ? LEU A 49 ASP A 53 A 4 VAL A 80 ? THR A 84 ? VAL A 79 THR A 83 A 5 ASP A 102 ? LEU A 105 ? ASP A 101 LEU A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 31 ? O ILE A 30 N VAL A 8 ? N VAL A 7 A 2 3 N LEU A 7 ? N LEU A 6 O LEU A 52 ? O LEU A 51 A 3 4 N VAL A 51 ? N VAL A 50 O LEU A 81 ? O LEU A 80 A 4 5 N MSE A 82 ? N MSE A 81 O ILE A 104 ? O ILE A 103 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 201 ? 9 'BINDING SITE FOR RESIDUE GOL A 201' AC2 Software A GOL 202 ? 3 'BINDING SITE FOR RESIDUE GOL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 12 ? SER A 11 . ? 1_555 ? 2 AC1 9 ILE A 15 ? ILE A 14 . ? 1_555 ? 3 AC1 9 ARG A 76 ? ARG A 75 . ? 4_545 ? 4 AC1 9 LYS A 106 ? LYS A 105 . ? 1_555 ? 5 AC1 9 HIS A 110 ? HIS A 109 . ? 1_555 ? 6 AC1 9 HIS A 111 ? HIS A 110 . ? 1_555 ? 7 AC1 9 HOH D . ? HOH A 212 . ? 1_555 ? 8 AC1 9 HOH D . ? HOH A 261 . ? 1_555 ? 9 AC1 9 HOH D . ? HOH A 359 . ? 4_545 ? 10 AC2 3 ARG A 29 ? ARG A 28 . ? 1_555 ? 11 AC2 3 THR A 46 ? THR A 45 . ? 1_555 ? 12 AC2 3 PRO A 47 ? PRO A 46 . ? 1_555 ? # _database_PDB_matrix.entry_id 3C3M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3C3M _atom_sites.fract_transf_matrix[1][1] 0.017318 _atom_sites.fract_transf_matrix[1][2] 0.009998 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019997 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010726 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 0 ? ? ? A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 MSE 14 13 13 MSE MSE A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 VAL 18 17 17 VAL VAL A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 MSE 22 21 21 MSE MSE A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 ARG 29 28 28 ARG ARG A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 THR 32 31 31 THR THR A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 PRO 48 47 47 PRO PRO A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 MSE 56 55 55 MSE MSE A . n A 1 57 MSE 57 56 56 MSE MSE A . n A 1 58 GLU 58 57 57 GLU GLU A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 MSE 60 59 59 MSE MSE A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 TRP 63 62 62 TRP TRP A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 ARG 68 67 67 ARG ARG A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 THR 71 70 70 THR THR A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 MSE 82 81 81 MSE MSE A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 PRO 87 86 86 PRO PRO A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 TYR 96 95 95 TYR TYR A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 TYR 99 98 98 TYR TYR A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 PRO 107 106 106 PRO PRO A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 HIS 110 109 109 HIS HIS A . n A 1 111 HIS 111 110 110 HIS HIS A . n A 1 112 GLN 112 111 111 GLN GLN A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 HIS 119 118 118 HIS HIS A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 ARG 123 122 122 ARG ARG A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 HIS 125 124 ? ? ? A . n A 1 126 SER 126 125 ? ? ? A . n A 1 127 ILE 127 126 ? ? ? A . n A 1 128 ALA 128 127 ? ? ? A . n A 1 129 ALA 129 128 ? ? ? A . n A 1 130 ASP 130 129 ? ? ? A . n A 1 131 GLU 131 130 ? ? ? A . n A 1 132 GLY 132 131 ? ? ? A . n A 1 133 HIS 133 132 ? ? ? A . n A 1 134 HIS 134 133 ? ? ? A . n A 1 135 HIS 135 134 ? ? ? A . n A 1 136 HIS 136 135 ? ? ? A . n A 1 137 HIS 137 136 ? ? ? A . n A 1 138 HIS 138 137 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 1 GOL GOL A . C 2 GOL 1 202 1 GOL GOL A . D 3 HOH 1 203 2 HOH HOH A . D 3 HOH 2 204 4 HOH HOH A . D 3 HOH 3 205 5 HOH HOH A . D 3 HOH 4 206 6 HOH HOH A . D 3 HOH 5 207 7 HOH HOH A . D 3 HOH 6 208 8 HOH HOH A . D 3 HOH 7 209 9 HOH HOH A . D 3 HOH 8 210 10 HOH HOH A . D 3 HOH 9 211 11 HOH HOH A . D 3 HOH 10 212 12 HOH HOH A . D 3 HOH 11 213 13 HOH HOH A . D 3 HOH 12 214 14 HOH HOH A . D 3 HOH 13 215 15 HOH HOH A . D 3 HOH 14 216 16 HOH HOH A . D 3 HOH 15 217 17 HOH HOH A . D 3 HOH 16 218 18 HOH HOH A . D 3 HOH 17 219 19 HOH HOH A . D 3 HOH 18 220 20 HOH HOH A . D 3 HOH 19 221 21 HOH HOH A . D 3 HOH 20 222 22 HOH HOH A . D 3 HOH 21 223 23 HOH HOH A . D 3 HOH 22 224 25 HOH HOH A . D 3 HOH 23 225 26 HOH HOH A . D 3 HOH 24 226 27 HOH HOH A . D 3 HOH 25 227 28 HOH HOH A . D 3 HOH 26 228 29 HOH HOH A . D 3 HOH 27 229 30 HOH HOH A . D 3 HOH 28 230 31 HOH HOH A . D 3 HOH 29 231 32 HOH HOH A . D 3 HOH 30 232 33 HOH HOH A . D 3 HOH 31 233 34 HOH HOH A . D 3 HOH 32 234 35 HOH HOH A . D 3 HOH 33 235 36 HOH HOH A . D 3 HOH 34 236 37 HOH HOH A . D 3 HOH 35 237 38 HOH HOH A . D 3 HOH 36 238 41 HOH HOH A . D 3 HOH 37 239 42 HOH HOH A . D 3 HOH 38 240 43 HOH HOH A . D 3 HOH 39 241 44 HOH HOH A . D 3 HOH 40 242 45 HOH HOH A . D 3 HOH 41 243 46 HOH HOH A . D 3 HOH 42 244 47 HOH HOH A . D 3 HOH 43 245 48 HOH HOH A . D 3 HOH 44 246 49 HOH HOH A . D 3 HOH 45 247 51 HOH HOH A . D 3 HOH 46 248 52 HOH HOH A . D 3 HOH 47 249 53 HOH HOH A . D 3 HOH 48 250 54 HOH HOH A . D 3 HOH 49 251 55 HOH HOH A . D 3 HOH 50 252 56 HOH HOH A . D 3 HOH 51 253 57 HOH HOH A . D 3 HOH 52 254 58 HOH HOH A . D 3 HOH 53 255 59 HOH HOH A . D 3 HOH 54 256 60 HOH HOH A . D 3 HOH 55 257 61 HOH HOH A . D 3 HOH 56 258 62 HOH HOH A . D 3 HOH 57 259 63 HOH HOH A . D 3 HOH 58 260 64 HOH HOH A . D 3 HOH 59 261 66 HOH HOH A . D 3 HOH 60 262 67 HOH HOH A . D 3 HOH 61 263 68 HOH HOH A . D 3 HOH 62 264 69 HOH HOH A . D 3 HOH 63 265 70 HOH HOH A . D 3 HOH 64 266 71 HOH HOH A . D 3 HOH 65 267 72 HOH HOH A . D 3 HOH 66 268 73 HOH HOH A . D 3 HOH 67 269 74 HOH HOH A . D 3 HOH 68 270 75 HOH HOH A . D 3 HOH 69 271 76 HOH HOH A . D 3 HOH 70 272 77 HOH HOH A . D 3 HOH 71 273 78 HOH HOH A . D 3 HOH 72 274 79 HOH HOH A . D 3 HOH 73 275 80 HOH HOH A . D 3 HOH 74 276 81 HOH HOH A . D 3 HOH 75 277 82 HOH HOH A . D 3 HOH 76 278 83 HOH HOH A . D 3 HOH 77 279 84 HOH HOH A . D 3 HOH 78 280 85 HOH HOH A . D 3 HOH 79 281 86 HOH HOH A . D 3 HOH 80 282 90 HOH HOH A . D 3 HOH 81 283 91 HOH HOH A . D 3 HOH 82 284 92 HOH HOH A . D 3 HOH 83 285 93 HOH HOH A . D 3 HOH 84 286 94 HOH HOH A . D 3 HOH 85 287 95 HOH HOH A . D 3 HOH 86 288 96 HOH HOH A . D 3 HOH 87 289 97 HOH HOH A . D 3 HOH 88 290 98 HOH HOH A . D 3 HOH 89 291 99 HOH HOH A . D 3 HOH 90 292 100 HOH HOH A . D 3 HOH 91 293 101 HOH HOH A . D 3 HOH 92 294 102 HOH HOH A . D 3 HOH 93 295 104 HOH HOH A . D 3 HOH 94 296 105 HOH HOH A . D 3 HOH 95 297 106 HOH HOH A . D 3 HOH 96 298 107 HOH HOH A . D 3 HOH 97 299 108 HOH HOH A . D 3 HOH 98 300 109 HOH HOH A . D 3 HOH 99 301 110 HOH HOH A . D 3 HOH 100 302 111 HOH HOH A . D 3 HOH 101 303 112 HOH HOH A . D 3 HOH 102 304 113 HOH HOH A . D 3 HOH 103 305 114 HOH HOH A . D 3 HOH 104 306 115 HOH HOH A . D 3 HOH 105 307 116 HOH HOH A . D 3 HOH 106 308 117 HOH HOH A . D 3 HOH 107 309 118 HOH HOH A . D 3 HOH 108 310 125 HOH HOH A . D 3 HOH 109 311 126 HOH HOH A . D 3 HOH 110 312 127 HOH HOH A . D 3 HOH 111 313 128 HOH HOH A . D 3 HOH 112 314 129 HOH HOH A . D 3 HOH 113 315 130 HOH HOH A . D 3 HOH 114 316 131 HOH HOH A . D 3 HOH 115 317 132 HOH HOH A . D 3 HOH 116 318 134 HOH HOH A . D 3 HOH 117 319 135 HOH HOH A . D 3 HOH 118 320 137 HOH HOH A . D 3 HOH 119 321 139 HOH HOH A . D 3 HOH 120 322 140 HOH HOH A . D 3 HOH 121 323 142 HOH HOH A . D 3 HOH 122 324 143 HOH HOH A . D 3 HOH 123 325 144 HOH HOH A . D 3 HOH 124 326 145 HOH HOH A . D 3 HOH 125 327 146 HOH HOH A . D 3 HOH 126 328 148 HOH HOH A . D 3 HOH 127 329 149 HOH HOH A . D 3 HOH 128 330 150 HOH HOH A . D 3 HOH 129 331 151 HOH HOH A . D 3 HOH 130 332 152 HOH HOH A . D 3 HOH 131 333 153 HOH HOH A . D 3 HOH 132 334 154 HOH HOH A . D 3 HOH 133 335 155 HOH HOH A . D 3 HOH 134 336 156 HOH HOH A . D 3 HOH 135 337 157 HOH HOH A . D 3 HOH 136 338 158 HOH HOH A . D 3 HOH 137 339 159 HOH HOH A . D 3 HOH 138 340 160 HOH HOH A . D 3 HOH 139 341 161 HOH HOH A . D 3 HOH 140 342 162 HOH HOH A . D 3 HOH 141 343 163 HOH HOH A . D 3 HOH 142 344 164 HOH HOH A . D 3 HOH 143 345 165 HOH HOH A . D 3 HOH 144 346 166 HOH HOH A . D 3 HOH 145 347 167 HOH HOH A . D 3 HOH 146 348 168 HOH HOH A . D 3 HOH 147 349 170 HOH HOH A . D 3 HOH 148 350 171 HOH HOH A . D 3 HOH 149 351 172 HOH HOH A . D 3 HOH 150 352 173 HOH HOH A . D 3 HOH 151 353 174 HOH HOH A . D 3 HOH 152 354 175 HOH HOH A . D 3 HOH 153 355 176 HOH HOH A . D 3 HOH 154 356 177 HOH HOH A . D 3 HOH 155 357 178 HOH HOH A . D 3 HOH 156 358 179 HOH HOH A . D 3 HOH 157 359 180 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 13 ? MET SELENOMETHIONINE 2 A MSE 22 A MSE 21 ? MET SELENOMETHIONINE 3 A MSE 56 A MSE 55 ? MET SELENOMETHIONINE 4 A MSE 57 A MSE 56 ? MET SELENOMETHIONINE 5 A MSE 60 A MSE 59 ? MET SELENOMETHIONINE 6 A MSE 82 A MSE 81 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2920 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.0776666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2018-11-14 5 'Structure model' 1 4 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 5 'Structure model' '_audit_author.identifier_ORCID' 3 5 'Structure model' '_citation_author.identifier_ORCID' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXD phasing . ? 1 SHELXE 'model building' . ? 2 REFMAC refinement 5.3.0034 ? 3 ADSC 'data collection' Quantum ? 4 HKL-2000 'data reduction' . ? 5 SCALEPACK 'data scaling' . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 3 ? ? 82.83 129.59 2 1 MSE A 55 ? A -78.39 -136.83 3 1 MSE A 55 ? B -109.99 71.33 4 1 MSE A 56 ? A 90.24 159.56 5 1 ASP A 101 ? ? -176.45 -172.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 0 ? A MSE 1 2 1 Y 1 A HIS 124 ? A HIS 125 3 1 Y 1 A SER 125 ? A SER 126 4 1 Y 1 A ILE 126 ? A ILE 127 5 1 Y 1 A ALA 127 ? A ALA 128 6 1 Y 1 A ALA 128 ? A ALA 129 7 1 Y 1 A ASP 129 ? A ASP 130 8 1 Y 1 A GLU 130 ? A GLU 131 9 1 Y 1 A GLY 131 ? A GLY 132 10 1 Y 1 A HIS 132 ? A HIS 133 11 1 Y 1 A HIS 133 ? A HIS 134 12 1 Y 1 A HIS 134 ? A HIS 135 13 1 Y 1 A HIS 135 ? A HIS 136 14 1 Y 1 A HIS 136 ? A HIS 137 15 1 Y 1 A HIS 137 ? A HIS 138 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #