data_3C44 # _entry.id 3C44 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3C44 pdb_00003c44 10.2210/pdb3c44/pdb NDB DR0042 ? ? RCSB RCSB046316 ? ? WWPDB D_1000046316 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2QEK 'Free subtype F HIV-1 DIS extended duplex RNA' unspecified PDB 3C3Z . unspecified PDB 3C5D . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3C44 _pdbx_database_status.recvd_initial_deposition_date 2008-01-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Freisz, S.' 1 'Ennifar, E.' 2 'Dumas, P.' 3 # _citation.id primary _citation.title 'Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 47 _citation.page_first 4110 _citation.page_last 4113 _citation.year 2008 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18435520 _citation.pdbx_database_id_DOI 10.1002/anie.200800726 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Freisz, S.' 1 ? primary 'Lang, K.' 2 ? primary 'Micura, R.' 3 ? primary 'Dumas, P.' 4 ? primary 'Ennifar, E.' 5 ? # _cell.entry_id 3C44 _cell.length_a 30.818 _cell.length_b 95.703 _cell.length_c 47.856 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C44 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HIV-1 subtype F genomic RNA' 7386.472 2 ? ? ? ? 2 non-polymer syn PAROMOMYCIN 615.628 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 water nat water 18.015 139 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUUGCUGAAGUGCACACAGCAAG _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAAGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3C44 _struct_ref.pdbx_db_accession 3C44 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3C44 A 1 ? 23 ? 3C44 1 ? 23 ? 1 23 2 1 3C44 B 1 ? 23 ? 3C44 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 PAR non-polymer . PAROMOMYCIN 'PAROMOMYCIN I; AMMINOSIDIN; CATENULIN; CRESTOMYCIN; MONOMYCIN A; NEOMYCIN E' 'C23 H45 N5 O14' 615.628 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3C44 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details 'MPD, MgCl2, KCl, Na cacodylate, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Na cacodylate' ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 KCl ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'Na cacodylate' ? ? ? 1 6 2 MgCl2 ? ? ? 1 7 2 KCl ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2004-07-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator crystal _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9195 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9195 # _reflns.entry_id 3C44 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 9333 _reflns.number_all ? _reflns.percent_possible_obs 92.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI 25.7 _reflns.B_iso_Wilson_estimate 24.4 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 77.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.17 _reflns_shell.meanI_over_sigI_obs 6.2 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 759 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3C44 _refine.ls_number_reflns_obs 9315 _refine.ls_number_reflns_all 9333 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 834219.64 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.55 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 92.0 _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.224 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.2 _refine.ls_number_reflns_R_free 762 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.7 _refine.aniso_B[1][1] -0.40 _refine.aniso_B[2][2] -0.51 _refine.aniso_B[3][3] 0.91 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.444731 _refine.solvent_model_param_bsol 66.5866 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3C3Z _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3C44 _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.29 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 978 _refine_hist.pdbx_number_atoms_ligand 90 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 1207 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 26.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 9.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.39 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 1267 _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.percent_reflns_obs 83.7 _refine_ls_shell.R_factor_R_free 0.33 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 7.9 _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rna_multi_end.param dna-rna_multi_end.top 'X-RAY DIFFRACTION' 2 paromomycine.param paromomycine.top 'X-RAY DIFFRACTION' 3 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 3C44 _struct.title 'Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C44 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, antibiotic, paromomycin, extended duplex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 3 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 8 "O4'" ? ? ? 1_555 D K . K ? ? A A 8 A K 25 1_555 ? ? ? ? ? ? ? 2.952 ? ? metalc2 metalc ? ? D K . K ? ? ? 1_555 K HOH . O ? ? A K 25 A HOH 91 1_555 ? ? ? ? ? ? ? 2.845 ? ? metalc3 metalc ? ? B U 3 O4 ? ? ? 1_555 G K . K ? ? B U 3 B K 25 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc4 metalc ? ? B G 4 O6 ? ? ? 1_555 G K . K ? ? B G 4 B K 25 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc5 metalc ? ? F PAR . N32 ? ? ? 1_555 H K . K ? ? B PAR 24 B K 26 1_555 ? ? ? ? ? ? ? 2.882 ? ? metalc6 metalc ? ? G K . K ? ? ? 1_555 L HOH . O ? ? B K 25 B HOH 34 1_555 ? ? ? ? ? ? ? 2.742 ? ? metalc7 metalc ? ? H K . K ? ? ? 1_555 L HOH . O ? ? B K 26 B HOH 62 1_555 ? ? ? ? ? ? ? 2.867 ? ? metalc8 metalc ? ? J K . K ? ? ? 1_555 L HOH . O ? ? B K 28 B HOH 66 1_555 ? ? ? ? ? ? ? 2.906 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 22 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 22 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 23 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 23 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 23 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B PAR 24 ? 12 'BINDING SITE FOR RESIDUE PAR B 24' AC2 Software A PAR 24 ? 6 'BINDING SITE FOR RESIDUE PAR A 24' AC3 Software A K 25 ? 1 'BINDING SITE FOR RESIDUE K A 25' AC4 Software B K 25 ? 1 'BINDING SITE FOR RESIDUE K B 25' AC5 Software B K 26 ? 1 'BINDING SITE FOR RESIDUE K B 26' AC6 Software B CL 27 ? 1 'BINDING SITE FOR RESIDUE CL B 27' AC7 Software B K 28 ? 1 'BINDING SITE FOR RESIDUE K B 28' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 HOH K . ? HOH A 31 . ? 1_555 ? 2 AC1 12 HOH K . ? HOH A 68 . ? 1_555 ? 3 AC1 12 HOH L . ? HOH B 30 . ? 1_555 ? 4 AC1 12 HOH L . ? HOH B 31 . ? 1_555 ? 5 AC1 12 HOH L . ? HOH B 35 . ? 1_555 ? 6 AC1 12 HOH L . ? HOH B 36 . ? 1_555 ? 7 AC1 12 HOH L . ? HOH B 43 . ? 1_555 ? 8 AC1 12 HOH L . ? HOH B 47 . ? 1_555 ? 9 AC1 12 HOH L . ? HOH B 58 . ? 1_555 ? 10 AC1 12 HOH L . ? HOH B 59 . ? 1_555 ? 11 AC1 12 HOH L . ? HOH B 62 . ? 1_555 ? 12 AC1 12 HOH L . ? HOH B 96 . ? 1_555 ? 13 AC2 6 HOH K . ? HOH A 29 . ? 1_555 ? 14 AC2 6 HOH K . ? HOH A 36 . ? 1_555 ? 15 AC2 6 HOH K . ? HOH A 72 . ? 1_555 ? 16 AC2 6 HOH L . ? HOH B 33 . ? 1_555 ? 17 AC2 6 HOH L . ? HOH B 43 . ? 1_555 ? 18 AC2 6 HOH L . ? HOH B 92 . ? 1_555 ? 19 AC3 1 HOH K . ? HOH A 91 . ? 1_555 ? 20 AC4 1 HOH L . ? HOH B 34 . ? 1_555 ? 21 AC5 1 HOH L . ? HOH B 62 . ? 1_555 ? 22 AC6 1 HOH L . ? HOH B 48 . ? 1_555 ? 23 AC7 1 HOH L . ? HOH B 66 . ? 1_555 ? # _database_PDB_matrix.entry_id 3C44 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3C44 _atom_sites.fract_transf_matrix[1][1] 0.032449 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010449 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020896 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C CYT A . n A 1 2 U 2 2 2 U URI A . n A 1 3 U 3 3 3 U URI A . n A 1 4 G 4 4 4 G GUA A . n A 1 5 C 5 5 5 C CYT A . n A 1 6 U 6 6 6 U URI A . n A 1 7 G 7 7 7 G GUA A . n A 1 8 A 8 8 8 A ADE A . n A 1 9 A 9 9 9 A ADE A . n A 1 10 G 10 10 10 G GUA A . n A 1 11 U 11 11 11 U URI A . n A 1 12 G 12 12 12 G GUA A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 A 14 14 14 A ADE A . n A 1 15 C 15 15 15 C CYT A . n A 1 16 A 16 16 16 A ADE A . n A 1 17 C 17 17 17 C CYT A . n A 1 18 A 18 18 18 A ADE A . n A 1 19 G 19 19 19 G GUA A . n A 1 20 C 20 20 20 C CYT A . n A 1 21 A 21 21 21 A ADE A . n A 1 22 A 22 22 22 A ADE A . n A 1 23 G 23 23 23 G GUA A . n B 1 1 C 1 1 1 C CYT B . n B 1 2 U 2 2 2 U URI B . n B 1 3 U 3 3 3 U URI B . n B 1 4 G 4 4 4 G GUA B . n B 1 5 C 5 5 5 C CYT B . n B 1 6 U 6 6 6 U URI B . n B 1 7 G 7 7 7 G GUA B . n B 1 8 A 8 8 8 A ADE B . n B 1 9 A 9 9 9 A ADE B . n B 1 10 G 10 10 10 G GUA B . n B 1 11 U 11 11 11 U URI B . n B 1 12 G 12 12 12 G GUA B . n B 1 13 C 13 13 13 C CYT B . n B 1 14 A 14 14 14 A ADE B . n B 1 15 C 15 15 15 C CYT B . n B 1 16 A 16 16 16 A ADE B . n B 1 17 C 17 17 17 C CYT B . n B 1 18 A 18 18 18 A ADE B . n B 1 19 G 19 19 19 G GUA B . n B 1 20 C 20 20 20 C CYT B . n B 1 21 A 21 21 21 A ADE B . n B 1 22 A 22 22 22 A ADE B . n B 1 23 G 23 23 23 G GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PAR 1 24 1 PAR PAR A . D 3 K 1 25 1 K K1 A . E 4 CL 1 26 4 CL CL1 A . F 2 PAR 1 24 1 PAR PAR B . G 3 K 1 25 2 K K1 B . H 3 K 1 26 3 K K1 B . I 4 CL 1 27 5 CL CL1 B . J 3 K 1 28 6 K K1 B . K 5 HOH 1 27 1 HOH TIP A . K 5 HOH 2 28 3 HOH TIP A . K 5 HOH 3 29 5 HOH TIP A . K 5 HOH 4 30 6 HOH TIP A . K 5 HOH 5 31 9 HOH TIP A . K 5 HOH 6 32 10 HOH TIP A . K 5 HOH 7 33 11 HOH TIP A . K 5 HOH 8 34 12 HOH TIP A . K 5 HOH 9 35 14 HOH TIP A . K 5 HOH 10 36 15 HOH TIP A . K 5 HOH 11 37 16 HOH TIP A . K 5 HOH 12 38 17 HOH TIP A . K 5 HOH 13 39 18 HOH TIP A . K 5 HOH 14 40 20 HOH TIP A . K 5 HOH 15 41 21 HOH TIP A . K 5 HOH 16 42 23 HOH TIP A . K 5 HOH 17 43 24 HOH TIP A . K 5 HOH 18 44 26 HOH TIP A . K 5 HOH 19 45 28 HOH TIP A . K 5 HOH 20 46 29 HOH TIP A . K 5 HOH 21 47 30 HOH TIP A . K 5 HOH 22 48 37 HOH TIP A . K 5 HOH 23 49 41 HOH TIP A . K 5 HOH 24 50 42 HOH TIP A . K 5 HOH 25 51 44 HOH TIP A . K 5 HOH 26 52 45 HOH TIP A . K 5 HOH 27 53 46 HOH TIP A . K 5 HOH 28 54 48 HOH TIP A . K 5 HOH 29 55 50 HOH TIP A . K 5 HOH 30 56 54 HOH TIP A . K 5 HOH 31 57 56 HOH TIP A . K 5 HOH 32 58 59 HOH TIP A . K 5 HOH 33 59 60 HOH TIP A . K 5 HOH 34 60 62 HOH TIP A . K 5 HOH 35 61 66 HOH TIP A . K 5 HOH 36 62 70 HOH TIP A . K 5 HOH 37 63 71 HOH TIP A . K 5 HOH 38 64 73 HOH TIP A . K 5 HOH 39 65 74 HOH TIP A . K 5 HOH 40 66 75 HOH TIP A . K 5 HOH 41 67 76 HOH TIP A . K 5 HOH 42 68 77 HOH TIP A . K 5 HOH 43 69 78 HOH TIP A . K 5 HOH 44 70 80 HOH TIP A . K 5 HOH 45 71 81 HOH TIP A . K 5 HOH 46 72 85 HOH TIP A . K 5 HOH 47 73 86 HOH TIP A . K 5 HOH 48 74 87 HOH TIP A . K 5 HOH 49 75 89 HOH TIP A . K 5 HOH 50 76 92 HOH TIP A . K 5 HOH 51 77 95 HOH TIP A . K 5 HOH 52 78 100 HOH TIP A . K 5 HOH 53 79 103 HOH TIP A . K 5 HOH 54 80 105 HOH TIP A . K 5 HOH 55 81 106 HOH TIP A . K 5 HOH 56 82 107 HOH TIP A . K 5 HOH 57 83 108 HOH TIP A . K 5 HOH 58 84 109 HOH TIP A . K 5 HOH 59 85 112 HOH TIP A . K 5 HOH 60 86 113 HOH TIP A . K 5 HOH 61 87 114 HOH TIP A . K 5 HOH 62 88 115 HOH TIP A . K 5 HOH 63 89 116 HOH TIP A . K 5 HOH 64 90 117 HOH TIP A . K 5 HOH 65 91 119 HOH TIP A . K 5 HOH 66 92 123 HOH TIP A . K 5 HOH 67 93 124 HOH TIP A . K 5 HOH 68 94 129 HOH TIP A . K 5 HOH 69 95 130 HOH TIP A . K 5 HOH 70 96 138 HOH TIP A . L 5 HOH 1 29 2 HOH TIP B . L 5 HOH 2 30 4 HOH TIP B . L 5 HOH 3 31 7 HOH TIP B . L 5 HOH 4 32 8 HOH TIP B . L 5 HOH 5 33 13 HOH TIP B . L 5 HOH 6 34 19 HOH TIP B . L 5 HOH 7 35 22 HOH TIP B . L 5 HOH 8 36 25 HOH TIP B . L 5 HOH 9 37 27 HOH TIP B . L 5 HOH 10 38 31 HOH TIP B . L 5 HOH 11 39 32 HOH TIP B . L 5 HOH 12 40 33 HOH TIP B . L 5 HOH 13 41 34 HOH TIP B . L 5 HOH 14 42 35 HOH TIP B . L 5 HOH 15 43 36 HOH TIP B . L 5 HOH 16 44 38 HOH TIP B . L 5 HOH 17 45 39 HOH TIP B . L 5 HOH 18 46 40 HOH TIP B . L 5 HOH 19 47 43 HOH TIP B . L 5 HOH 20 48 47 HOH TIP B . L 5 HOH 21 49 49 HOH TIP B . L 5 HOH 22 50 51 HOH TIP B . L 5 HOH 23 51 52 HOH TIP B . L 5 HOH 24 52 53 HOH TIP B . L 5 HOH 25 53 55 HOH TIP B . L 5 HOH 26 54 57 HOH TIP B . L 5 HOH 27 55 58 HOH TIP B . L 5 HOH 28 56 61 HOH TIP B . L 5 HOH 29 57 63 HOH TIP B . L 5 HOH 30 58 64 HOH TIP B . L 5 HOH 31 59 65 HOH TIP B . L 5 HOH 32 60 67 HOH TIP B . L 5 HOH 33 61 68 HOH TIP B . L 5 HOH 34 62 69 HOH TIP B . L 5 HOH 35 63 72 HOH TIP B . L 5 HOH 36 64 79 HOH TIP B . L 5 HOH 37 65 82 HOH TIP B . L 5 HOH 38 66 83 HOH TIP B . L 5 HOH 39 67 84 HOH TIP B . L 5 HOH 40 68 88 HOH TIP B . L 5 HOH 41 69 90 HOH TIP B . L 5 HOH 42 70 91 HOH TIP B . L 5 HOH 43 71 93 HOH TIP B . L 5 HOH 44 72 94 HOH TIP B . L 5 HOH 45 73 96 HOH TIP B . L 5 HOH 46 74 97 HOH TIP B . L 5 HOH 47 75 98 HOH TIP B . L 5 HOH 48 76 99 HOH TIP B . L 5 HOH 49 77 101 HOH TIP B . L 5 HOH 50 78 102 HOH TIP B . L 5 HOH 51 79 104 HOH TIP B . L 5 HOH 52 80 110 HOH TIP B . L 5 HOH 53 81 111 HOH TIP B . L 5 HOH 54 82 118 HOH TIP B . L 5 HOH 55 83 120 HOH TIP B . L 5 HOH 56 84 121 HOH TIP B . L 5 HOH 57 85 122 HOH TIP B . L 5 HOH 58 86 125 HOH TIP B . L 5 HOH 59 87 126 HOH TIP B . L 5 HOH 60 88 127 HOH TIP B . L 5 HOH 61 89 128 HOH TIP B . L 5 HOH 62 90 131 HOH TIP B . L 5 HOH 63 91 132 HOH TIP B . L 5 HOH 64 92 133 HOH TIP B . L 5 HOH 65 93 134 HOH TIP B . L 5 HOH 66 94 135 HOH TIP B . L 5 HOH 67 95 136 HOH TIP B . L 5 HOH 68 96 137 HOH TIP B . L 5 HOH 69 97 139 HOH TIP B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5750 ? 1 MORE -71 ? 1 'SSA (A^2)' 7860 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 96 ? K HOH . 2 1 B HOH 63 ? L HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O4'" ? A A 8 ? A A 8 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? K HOH . ? A HOH 91 ? 1_555 137.0 ? 2 O4 ? B U 3 ? B U 3 ? 1_555 K ? G K . ? B K 25 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 70.3 ? 3 O4 ? B U 3 ? B U 3 ? 1_555 K ? G K . ? B K 25 ? 1_555 O ? L HOH . ? B HOH 34 ? 1_555 76.3 ? 4 O6 ? B G 4 ? B G 4 ? 1_555 K ? G K . ? B K 25 ? 1_555 O ? L HOH . ? B HOH 34 ? 1_555 83.4 ? 5 N32 ? F PAR . ? B PAR 24 ? 1_555 K ? H K . ? B K 26 ? 1_555 O ? L HOH . ? B HOH 62 ? 1_555 101.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_struct_conn.pdbx_dist_value' 5 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DNA 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CL CL CL N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 K K K N N 115 PAR C11 C N S 116 PAR O11 O N N 117 PAR C21 C N R 118 PAR N21 N N N 119 PAR C31 C N R 120 PAR O31 O N N 121 PAR C41 C N S 122 PAR O41 O N N 123 PAR C51 C N R 124 PAR O51 O N N 125 PAR C61 C N N 126 PAR O61 O N N 127 PAR C12 C N R 128 PAR N12 N N N 129 PAR C22 C N N 130 PAR C32 C N S 131 PAR N32 N N N 132 PAR C42 C N R 133 PAR C52 C N R 134 PAR O52 O N N 135 PAR C62 C N S 136 PAR O62 O N N 137 PAR C13 C N S 138 PAR C23 C N R 139 PAR O23 O N N 140 PAR C33 C N S 141 PAR O33 O N N 142 PAR C43 C N R 143 PAR O43 O N N 144 PAR C53 C N N 145 PAR O53 O N N 146 PAR C14 C N R 147 PAR C24 C N R 148 PAR N24 N N N 149 PAR C34 C N R 150 PAR O34 O N N 151 PAR C44 C N S 152 PAR O44 O N N 153 PAR C54 C N S 154 PAR O54 O N N 155 PAR C64 C N N 156 PAR N64 N N N 157 PAR H11 H N N 158 PAR H21 H N N 159 PAR HN21 H N N 160 PAR HN22 H N N 161 PAR H31 H N N 162 PAR HO31 H N N 163 PAR H41 H N N 164 PAR HO41 H N N 165 PAR H51 H N N 166 PAR H611 H N N 167 PAR H612 H N N 168 PAR HO61 H N N 169 PAR H12 H N N 170 PAR H121 H N N 171 PAR H122 H N N 172 PAR H221 H N N 173 PAR H222 H N N 174 PAR H32 H N N 175 PAR H321 H N N 176 PAR H322 H N N 177 PAR H42 H N N 178 PAR H52 H N N 179 PAR H62 H N N 180 PAR HO62 H N N 181 PAR H13 H N N 182 PAR H23 H N N 183 PAR HO23 H N N 184 PAR H33 H N N 185 PAR H43 H N N 186 PAR H531 H N N 187 PAR H532 H N N 188 PAR HO53 H N N 189 PAR H14 H N N 190 PAR H24 H N N 191 PAR H241 H N N 192 PAR H242 H N N 193 PAR H34 H N N 194 PAR HO34 H N N 195 PAR H44 H N N 196 PAR HO44 H N N 197 PAR H54 H N N 198 PAR H641 H N N 199 PAR H642 H N N 200 PAR HN61 H N N 201 PAR HN62 H N N 202 U OP3 O N N 203 U P P N N 204 U OP1 O N N 205 U OP2 O N N 206 U "O5'" O N N 207 U "C5'" C N N 208 U "C4'" C N R 209 U "O4'" O N N 210 U "C3'" C N S 211 U "O3'" O N N 212 U "C2'" C N R 213 U "O2'" O N N 214 U "C1'" C N R 215 U N1 N N N 216 U C2 C N N 217 U O2 O N N 218 U N3 N N N 219 U C4 C N N 220 U O4 O N N 221 U C5 C N N 222 U C6 C N N 223 U HOP3 H N N 224 U HOP2 H N N 225 U "H5'" H N N 226 U "H5''" H N N 227 U "H4'" H N N 228 U "H3'" H N N 229 U "HO3'" H N N 230 U "H2'" H N N 231 U "HO2'" H N N 232 U "H1'" H N N 233 U H3 H N N 234 U H5 H N N 235 U H6 H N N 236 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PAR C11 O11 sing N N 118 PAR C11 C21 sing N N 119 PAR C11 O51 sing N N 120 PAR C11 H11 sing N N 121 PAR O11 C42 sing N N 122 PAR C21 N21 sing N N 123 PAR C21 C31 sing N N 124 PAR C21 H21 sing N N 125 PAR N21 HN21 sing N N 126 PAR N21 HN22 sing N N 127 PAR C31 O31 sing N N 128 PAR C31 C41 sing N N 129 PAR C31 H31 sing N N 130 PAR O31 HO31 sing N N 131 PAR C41 O41 sing N N 132 PAR C41 C51 sing N N 133 PAR C41 H41 sing N N 134 PAR O41 HO41 sing N N 135 PAR C51 O51 sing N N 136 PAR C51 C61 sing N N 137 PAR C51 H51 sing N N 138 PAR C61 O61 sing N N 139 PAR C61 H611 sing N N 140 PAR C61 H612 sing N N 141 PAR O61 HO61 sing N N 142 PAR C12 N12 sing N N 143 PAR C12 C22 sing N N 144 PAR C12 C62 sing N N 145 PAR C12 H12 sing N N 146 PAR N12 H121 sing N N 147 PAR N12 H122 sing N N 148 PAR C22 C32 sing N N 149 PAR C22 H221 sing N N 150 PAR C22 H222 sing N N 151 PAR C32 N32 sing N N 152 PAR C32 C42 sing N N 153 PAR C32 H32 sing N N 154 PAR N32 H321 sing N N 155 PAR N32 H322 sing N N 156 PAR C42 C52 sing N N 157 PAR C42 H42 sing N N 158 PAR C52 O52 sing N N 159 PAR C52 C62 sing N N 160 PAR C52 H52 sing N N 161 PAR O52 C13 sing N N 162 PAR C62 O62 sing N N 163 PAR C62 H62 sing N N 164 PAR O62 HO62 sing N N 165 PAR C13 C23 sing N N 166 PAR C13 O43 sing N N 167 PAR C13 H13 sing N N 168 PAR C23 O23 sing N N 169 PAR C23 C33 sing N N 170 PAR C23 H23 sing N N 171 PAR O23 HO23 sing N N 172 PAR C33 O33 sing N N 173 PAR C33 C43 sing N N 174 PAR C33 H33 sing N N 175 PAR O33 C14 sing N N 176 PAR C43 O43 sing N N 177 PAR C43 C53 sing N N 178 PAR C43 H43 sing N N 179 PAR C53 O53 sing N N 180 PAR C53 H531 sing N N 181 PAR C53 H532 sing N N 182 PAR O53 HO53 sing N N 183 PAR C14 C24 sing N N 184 PAR C14 O54 sing N N 185 PAR C14 H14 sing N N 186 PAR C24 N24 sing N N 187 PAR C24 C34 sing N N 188 PAR C24 H24 sing N N 189 PAR N24 H241 sing N N 190 PAR N24 H242 sing N N 191 PAR C34 O34 sing N N 192 PAR C34 C44 sing N N 193 PAR C34 H34 sing N N 194 PAR O34 HO34 sing N N 195 PAR C44 O44 sing N N 196 PAR C44 C54 sing N N 197 PAR C44 H44 sing N N 198 PAR O44 HO44 sing N N 199 PAR C54 O54 sing N N 200 PAR C54 C64 sing N N 201 PAR C54 H54 sing N N 202 PAR C64 N64 sing N N 203 PAR C64 H641 sing N N 204 PAR C64 H642 sing N N 205 PAR N64 HN61 sing N N 206 PAR N64 HN62 sing N N 207 U OP3 P sing N N 208 U OP3 HOP3 sing N N 209 U P OP1 doub N N 210 U P OP2 sing N N 211 U P "O5'" sing N N 212 U OP2 HOP2 sing N N 213 U "O5'" "C5'" sing N N 214 U "C5'" "C4'" sing N N 215 U "C5'" "H5'" sing N N 216 U "C5'" "H5''" sing N N 217 U "C4'" "O4'" sing N N 218 U "C4'" "C3'" sing N N 219 U "C4'" "H4'" sing N N 220 U "O4'" "C1'" sing N N 221 U "C3'" "O3'" sing N N 222 U "C3'" "C2'" sing N N 223 U "C3'" "H3'" sing N N 224 U "O3'" "HO3'" sing N N 225 U "C2'" "O2'" sing N N 226 U "C2'" "C1'" sing N N 227 U "C2'" "H2'" sing N N 228 U "O2'" "HO2'" sing N N 229 U "C1'" N1 sing N N 230 U "C1'" "H1'" sing N N 231 U N1 C2 sing N N 232 U N1 C6 sing N N 233 U C2 O2 doub N N 234 U C2 N3 sing N N 235 U N3 C4 sing N N 236 U N3 H3 sing N N 237 U C4 O4 doub N N 238 U C4 C5 sing N N 239 U C5 C6 doub N N 240 U C5 H5 sing N N 241 U C6 H6 sing N N 242 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3C44 'double helix' 3C44 'a-form double helix' 3C44 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 23 1_555 -0.023 -0.160 0.004 5.628 -22.253 -4.421 1 A_C1:G23_B A 1 ? B 23 ? 19 1 1 A U 2 1_555 B A 22 1_555 0.252 -0.229 0.395 -6.883 -20.139 1.127 2 A_U2:A22_B A 2 ? B 22 ? 20 1 1 A U 3 1_555 B A 21 1_555 -1.002 -0.128 -0.064 -2.287 -11.234 0.173 3 A_U3:A21_B A 3 ? B 21 ? 20 1 1 A G 4 1_555 B C 20 1_555 0.344 -0.274 0.008 2.223 -12.095 -1.947 4 A_G4:C20_B A 4 ? B 20 ? 19 1 1 A C 5 1_555 B G 19 1_555 0.193 -0.102 -0.067 10.164 -14.875 0.653 5 A_C5:G19_B A 5 ? B 19 ? 19 1 1 A U 6 1_555 B A 18 1_555 -0.159 0.028 0.135 2.542 -21.127 4.635 6 A_U6:A18_B A 6 ? B 18 ? 20 1 1 A G 7 1_555 B C 17 1_555 -0.135 -0.162 -0.171 -12.832 -23.187 4.721 7 A_G7:C17_B A 7 ? B 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.240 -0.253 0.074 -1.325 -7.258 -3.225 8 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.224 -0.264 -0.021 -1.577 -11.171 -4.379 9 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.419 -0.258 -0.227 -4.145 -9.716 1.608 10 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.246 -0.175 -0.154 4.422 -9.210 -0.152 11 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.206 -0.170 -0.039 1.345 -5.506 -0.585 12 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.374 -0.290 -0.082 5.686 -2.260 -0.408 13 A_C15:G10_B A 15 ? B 10 ? 19 1 1 A C 17 1_555 B G 7 1_555 0.553 -0.214 0.156 2.015 -16.185 2.117 14 A_C17:G7_B A 17 ? B 7 ? 19 1 1 A A 18 1_555 B U 6 1_555 0.098 -0.278 0.449 3.547 -5.760 0.773 15 A_A18:U6_B A 18 ? B 6 ? 20 1 1 A G 19 1_555 B C 5 1_555 -0.406 -0.219 0.272 4.477 -14.790 -0.843 16 A_G19:C5_B A 19 ? B 5 ? 19 1 1 A C 20 1_555 B G 4 1_555 0.154 -0.049 0.246 -1.764 -12.401 2.894 17 A_C20:G4_B A 20 ? B 4 ? 19 1 1 A A 21 1_555 B U 3 1_555 -0.178 -0.226 0.227 -0.506 -14.643 -4.346 18 A_A21:U3_B A 21 ? B 3 ? 20 1 1 A A 22 1_555 B U 2 1_555 0.550 -0.123 0.752 0.739 -13.703 5.247 19 A_A22:U2_B A 22 ? B 2 ? 20 1 1 A G 23 1_555 B C 1 1_555 0.684 -0.465 0.371 -6.972 -14.927 -5.066 20 A_G23:C1_B A 23 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 23 1_555 A U 2 1_555 B A 22 1_555 0.188 -1.305 3.586 -2.285 16.630 34.295 -4.138 -0.582 2.677 26.338 3.619 38.071 1 AA_C1U2:A22G23_BB A 1 ? B 23 ? A 2 ? B 22 ? 1 A U 2 1_555 B A 22 1_555 A U 3 1_555 B A 21 1_555 -0.531 -0.716 3.054 -0.413 12.991 27.181 -3.747 0.948 2.470 25.850 0.822 30.076 2 AA_U2U3:A21A22_BB A 2 ? B 22 ? A 3 ? B 21 ? 1 A U 3 1_555 B A 21 1_555 A G 4 1_555 B C 20 1_555 0.022 -1.331 3.128 -4.578 16.767 35.715 -3.682 -0.502 2.284 25.558 6.978 39.595 3 AA_U3G4:C20A21_BB A 3 ? B 21 ? A 4 ? B 20 ? 1 A G 4 1_555 B C 20 1_555 A C 5 1_555 B G 19 1_555 0.291 -1.549 3.111 0.727 0.525 31.210 -2.972 -0.411 3.091 0.976 -1.350 31.222 4 AA_G4C5:G19C20_BB A 4 ? B 20 ? A 5 ? B 19 ? 1 A C 5 1_555 B G 19 1_555 A U 6 1_555 B A 18 1_555 0.277 -1.807 3.297 0.721 9.969 31.163 -4.809 -0.377 2.615 17.985 -1.301 32.689 5 AA_C5U6:A18G19_BB A 5 ? B 19 ? A 6 ? B 18 ? 1 A U 6 1_555 B A 18 1_555 A G 7 1_555 B C 17 1_555 0.130 -1.583 3.397 2.286 17.006 33.023 -4.608 0.081 2.337 27.712 -3.726 37.105 6 AA_U6G7:C17A18_BB A 6 ? B 18 ? A 7 ? B 17 ? 1 A G 7 1_555 B C 17 1_555 A G 10 1_555 B C 15 1_555 -1.585 -3.826 5.949 5.534 23.930 78.494 -3.944 1.448 4.728 18.499 -4.278 81.651 7 AA_G7G10:C15C17_BB A 7 ? B 17 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.761 -2.553 3.250 -2.166 0.842 29.962 -5.095 1.027 3.225 1.625 4.181 30.050 8 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 -0.008 -1.736 3.301 1.396 10.477 29.621 -5.019 0.256 2.551 19.719 -2.628 31.411 9 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 -0.133 -0.828 2.997 -0.623 9.608 34.037 -2.619 0.138 2.674 16.020 1.039 35.334 10 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.536 -1.723 3.283 -0.598 14.234 28.987 -5.351 -1.060 2.206 26.511 1.113 32.231 11 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.710 -2.640 3.163 0.765 1.383 25.318 -6.391 -1.407 3.037 3.152 -1.742 25.367 12 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A C 17 1_555 B G 7 1_555 A A 18 1_555 B U 6 1_555 -0.524 -1.551 2.998 -3.994 10.924 31.102 -4.279 0.348 2.381 19.537 7.143 33.155 13 AA_C17A18:U6G7_BB A 17 ? B 7 ? A 18 ? B 6 ? 1 A A 18 1_555 B U 6 1_555 A G 19 1_555 B C 5 1_555 -0.109 -1.213 3.148 1.667 4.330 29.065 -3.255 0.549 2.929 8.559 -3.296 29.426 14 AA_A18G19:C5U6_BB A 18 ? B 6 ? A 19 ? B 5 ? 1 A G 19 1_555 B C 5 1_555 A C 20 1_555 B G 4 1_555 0.608 -1.417 3.295 0.944 7.026 35.451 -3.246 -0.851 2.984 11.397 -1.532 36.130 15 AA_G19C20:G4C5_BB A 19 ? B 5 ? A 20 ? B 4 ? 1 A C 20 1_555 B G 4 1_555 A A 21 1_555 B U 3 1_555 -0.632 -1.823 2.946 0.399 10.544 31.521 -4.628 1.161 2.229 18.763 -0.711 33.197 16 AA_C20A21:U3G4_BB A 20 ? B 4 ? A 21 ? B 3 ? 1 A A 21 1_555 B U 3 1_555 A A 22 1_555 B U 2 1_555 0.557 -1.328 3.122 -1.586 3.944 34.989 -2.738 -1.139 2.932 6.531 2.625 35.238 17 AA_A21A22:U2U3_BB A 21 ? B 3 ? A 22 ? B 2 ? 1 A A 22 1_555 B U 2 1_555 A G 23 1_555 B C 1 1_555 -0.307 -1.507 3.278 5.408 5.686 36.232 -3.106 1.181 2.941 9.013 -8.572 37.044 18 AA_A22G23:C1U2_BB A 22 ? B 2 ? A 23 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 PAROMOMYCIN PAR 3 'POTASSIUM ION' K 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3C3Z _pdbx_initial_refinement_model.details ? #