HEADER TRANSFERASE 30-JAN-08 3C4Z TITLE CRYSTAL STRUCTURE OF G PROTEIN COUPLED RECEPTOR KINASE 1 BOUND TO ADP TITLE 2 AND MAGNESIUM CHLORIDE AT 1.84A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-535; COMPND 5 SYNONYM: RK, G PROTEIN-COUPLED RECEPTOR KINASE 1; COMPND 6 EC: 2.7.11.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GRK1, RHOK; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH 5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PFASTBAC DUAL KEYWDS SER/THR KINASE, RGS HOMOLOGY DOMAIN, G PROTEIN COUPLED RECEPTOR KEYWDS 2 KINASE, GRK, GRK1, RHODOPSIN KINASE, P-LOOP, AUTOPHOSPHORYLATION, KEYWDS 3 ADP, ATP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, NUCLEOTIDE- KEYWDS 4 BINDING, PHOSPHOPROTEIN, PRENYLATION, SERINE/THREONINE-PROTEIN KEYWDS 5 KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SINGH,J.J.G.TESMER REVDAT 6 30-AUG-23 3C4Z 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 3C4Z 1 VERSN REVDAT 4 24-FEB-09 3C4Z 1 VERSN REVDAT 3 20-MAY-08 3C4Z 1 JRNL REVDAT 2 18-MAR-08 3C4Z 1 JRNL REVDAT 1 11-MAR-08 3C4Z 0 JRNL AUTH P.SINGH,B.WANG,T.MAEDA,K.PALCZEWSKI,J.J.TESMER JRNL TITL STRUCTURES OF RHODOPSIN KINASE IN DIFFERENT LIGAND STATES JRNL TITL 2 REVEAL KEY ELEMENTS INVOLVED IN G PROTEIN-COUPLED RECEPTOR JRNL TITL 3 KINASE ACTIVATION. JRNL REF J.BIOL.CHEM. V. 283 14053 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18339619 JRNL DOI 10.1074/JBC.M708974200 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 49338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4147 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2928 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5608 ; 1.175 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7081 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 5.368 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;34.674 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 716 ;13.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;12.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4629 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 787 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2888 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2007 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2116 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 293 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3261 ; 1.368 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1011 ; 0.173 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3986 ; 1.700 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1981 ; 3.261 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1622 ; 4.320 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 533 REMARK 3 RESIDUE RANGE : A 567 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7840 -20.8150 22.3320 REMARK 3 T TENSOR REMARK 3 T11: -.0239 T22: -.1412 REMARK 3 T33: -.0254 T12: -.0188 REMARK 3 T13: .0232 T23: -.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.5199 L22: .2004 REMARK 3 L33: .7682 L12: .0234 REMARK 3 L13: .8661 L23: .0637 REMARK 3 S TENSOR REMARK 3 S11: -.0569 S12: .1374 S13: .0362 REMARK 3 S21: .0093 S22: .0112 S23: -.0002 REMARK 3 S31: -.0228 S32: .1442 S33: .0456 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3C4W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, NACL, GLYCEROL, MES PH 6.25, REMARK 280 ADP, MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.47350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.47350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -5.62616 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.99618 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 ASN A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 PHE A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 PHE A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 ALA A 138 REMARK 465 GLY A 139 REMARK 465 ASP A 140 REMARK 465 ILE A 481 REMARK 465 GLN A 482 REMARK 465 ASP A 483 REMARK 465 VAL A 484 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 LYS A 491 REMARK 465 ASP A 534 REMARK 465 GLY A 535 REMARK 465 VAL A 536 REMARK 465 ASP A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 612 O HOH A 897 1.69 REMARK 500 OD1 ASN A 398 O HOH A 900 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 831 O HOH A 832 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 156 -110.24 -101.92 REMARK 500 ASP A 314 37.66 -148.15 REMARK 500 ASP A 332 78.39 70.91 REMARK 500 ASP A 367 -146.80 -126.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 563 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 332 OD2 REMARK 620 2 ADP A 562 O3B 89.7 REMARK 620 3 ADP A 562 O2A 92.8 86.7 REMARK 620 4 HOH A 582 O 96.9 171.5 87.7 REMARK 620 5 HOH A 583 O 92.0 89.1 173.5 95.9 REMARK 620 6 HOH A 761 O 173.7 84.0 88.1 89.4 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 564 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 332 OD1 REMARK 620 2 ADP A 562 O2B 96.6 REMARK 620 3 HOH A 584 O 86.2 175.7 REMARK 620 4 HOH A 585 O 93.9 94.6 88.5 REMARK 620 5 HOH A 586 O 84.3 84.1 92.8 177.7 REMARK 620 6 HOH A 587 O 170.1 88.0 88.8 94.5 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 563 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 564 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 566 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 562 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C4X RELATED DB: PDB REMARK 900 RELATED ID: 3C4Y RELATED DB: PDB REMARK 900 RELATED ID: 3C50 RELATED DB: PDB REMARK 900 RELATED ID: 3C51 RELATED DB: PDB REMARK 900 RELATED ID: 3C4W RELATED DB: PDB DBREF 3C4Z A 1 535 UNP P28327 RK_BOVIN 1 535 SEQADV 3C4Z VAL A 536 UNP P28327 EXPRESSION TAG SEQADV 3C4Z ASP A 537 UNP P28327 EXPRESSION TAG SEQADV 3C4Z HIS A 538 UNP P28327 EXPRESSION TAG SEQADV 3C4Z HIS A 539 UNP P28327 EXPRESSION TAG SEQADV 3C4Z HIS A 540 UNP P28327 EXPRESSION TAG SEQADV 3C4Z HIS A 541 UNP P28327 EXPRESSION TAG SEQADV 3C4Z HIS A 542 UNP P28327 EXPRESSION TAG SEQADV 3C4Z HIS A 543 UNP P28327 EXPRESSION TAG SEQRES 1 A 543 MET ASP PHE GLY SER LEU GLU THR VAL VAL ALA ASN SER SEQRES 2 A 543 ALA PHE ILE ALA ALA ARG GLY SER PHE ASP ALA SER SER SEQRES 3 A 543 GLY PRO ALA SER ARG ASP ARG LYS TYR LEU ALA ARG LEU SEQRES 4 A 543 LYS LEU PRO PRO LEU SER LYS CYS GLU ALA LEU ARG GLU SEQRES 5 A 543 SER LEU ASP LEU GLY PHE GLU GLY MET CYS LEU GLU GLN SEQRES 6 A 543 PRO ILE GLY LYS ARG LEU PHE GLN GLN PHE LEU ARG THR SEQRES 7 A 543 HIS GLU GLN HIS GLY PRO ALA LEU GLN LEU TRP LYS ASP SEQRES 8 A 543 ILE GLU ASP TYR ASP THR ALA ASP ASP ALA LEU ARG PRO SEQRES 9 A 543 GLN LYS ALA GLN ALA LEU ARG ALA ALA TYR LEU GLU PRO SEQRES 10 A 543 GLN ALA GLN LEU PHE CYS SER PHE LEU ASP ALA GLU THR SEQRES 11 A 543 VAL ALA ARG ALA ARG ALA GLY ALA GLY ASP GLY LEU PHE SEQRES 12 A 543 GLN PRO LEU LEU ARG ALA VAL LEU ALA HIS LEU GLY GLN SEQRES 13 A 543 ALA PRO PHE GLN GLU PHE LEU ASP SER LEU TYR PHE LEU SEQRES 14 A 543 ARG PHE LEU GLN TRP LYS TRP LEU GLU ALA GLN PRO MET SEQRES 15 A 543 GLY GLU ASP TRP PHE LEU ASP PHE ARG VAL LEU GLY ARG SEQRES 16 A 543 GLY GLY PHE GLY GLU VAL PHE ALA CYS GLN MET LYS ALA SEQRES 17 A 543 THR GLY LYS LEU TYR ALA CYS LYS LYS LEU ASN LYS LYS SEQRES 18 A 543 ARG LEU LYS LYS ARG LYS GLY TYR GLN GLY ALA MET VAL SEQRES 19 A 543 GLU LYS LYS ILE LEU ALA LYS VAL HIS SER ARG PHE ILE SEQRES 20 A 543 VAL SER LEU ALA TYR ALA PHE GLU THR LYS THR ASP LEU SEQRES 21 A 543 CYS LEU VAL MET THR ILE MET ASN GLY GLY ASP ILE ARG SEQRES 22 A 543 TYR HIS ILE TYR ASN VAL ASP GLU ASP ASN PRO GLY PHE SEQRES 23 A 543 GLN GLU PRO ARG ALA ILE PHE TYR THR ALA GLN ILE VAL SEQRES 24 A 543 SER GLY LEU GLU HIS LEU HIS GLN ARG ASN ILE ILE TYR SEQRES 25 A 543 ARG ASP LEU LYS PRO GLU ASN VAL LEU LEU ASP ASP ASP SEQRES 26 A 543 GLY ASN VAL ARG ILE SER ASP LEU GLY LEU ALA VAL GLU SEQRES 27 A 543 LEU LYS ALA GLY GLN THR LYS THR LYS GLY TYR ALA GLY SEQRES 28 A 543 THR PRO GLY PHE MET ALA PRO GLU LEU LEU LEU GLY GLU SEQRES 29 A 543 GLU TYR ASP PHE SER VAL ASP TYR PHE ALA LEU GLY VAL SEQRES 30 A 543 THR LEU TYR GLU MET ILE ALA ALA ARG GLY PRO PHE ARG SEQRES 31 A 543 ALA ARG GLY GLU LYS VAL GLU ASN LYS GLU LEU LYS GLN SEQRES 32 A 543 ARG VAL LEU GLU GLN ALA VAL THR TYR PRO ASP LYS PHE SEQRES 33 A 543 SER PRO ALA SER LYS ASP PHE CYS GLU ALA LEU LEU GLN SEQRES 34 A 543 LYS ASP PRO GLU LYS ARG LEU GLY PHE ARG ASP GLY SER SEQRES 35 A 543 CYS ASP GLY LEU ARG THR HIS PRO LEU PHE ARG ASP ILE SEQRES 36 A 543 SER TRP ARG GLN LEU GLU ALA GLY MET LEU THR PRO PRO SEQRES 37 A 543 PHE VAL PRO ASP SER ARG THR VAL TYR ALA LYS ASN ILE SEQRES 38 A 543 GLN ASP VAL GLY ALA PHE SER THR VAL LYS GLY VAL ALA SEQRES 39 A 543 PHE GLU LYS ALA ASP THR GLU PHE PHE GLN GLU PHE ALA SEQRES 40 A 543 SER GLY THR CYS PRO ILE PRO TRP GLN GLU GLU MET ILE SEQRES 41 A 543 GLU THR GLY VAL PHE GLY ASP LEU ASN VAL TRP ARG PRO SEQRES 42 A 543 ASP GLY VAL ASP HIS HIS HIS HIS HIS HIS HET MG A 563 1 HET MG A 564 1 HET CL A 565 1 HET CL A 566 1 HET ADP A 562 27 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 ADP C10 H15 N5 O10 P2 FORMUL 7 HOH *335(H2 O) HELIX 1 1 ASP A 32 ALA A 37 1 6 HELIX 2 2 PRO A 43 LYS A 46 5 4 HELIX 3 3 CYS A 47 LEU A 54 1 8 HELIX 4 4 GLY A 57 LEU A 63 1 7 HELIX 5 5 GLN A 65 HIS A 79 1 15 HELIX 6 6 HIS A 82 THR A 97 1 16 HELIX 7 7 LEU A 102 LEU A 115 1 14 HELIX 8 8 ASP A 127 ALA A 136 1 10 HELIX 9 9 PHE A 143 GLY A 155 1 13 HELIX 10 10 GLN A 156 ASP A 164 1 9 HELIX 11 11 SER A 165 ALA A 179 1 15 HELIX 12 12 GLY A 183 ASP A 185 5 3 HELIX 13 13 LYS A 220 ARG A 226 1 7 HELIX 14 14 GLY A 228 VAL A 242 1 15 HELIX 15 15 ASP A 271 ASN A 278 1 8 HELIX 16 16 GLN A 287 ARG A 308 1 22 HELIX 17 17 LYS A 316 GLU A 318 5 3 HELIX 18 18 ALA A 357 LEU A 362 1 6 HELIX 19 19 PHE A 368 ALA A 385 1 18 HELIX 20 20 GLU A 397 GLN A 408 1 12 HELIX 21 21 SER A 417 LEU A 428 1 12 HELIX 22 22 ASP A 431 ARG A 435 5 5 HELIX 23 23 CYS A 443 THR A 448 1 6 HELIX 24 24 HIS A 449 ARG A 453 5 5 HELIX 25 25 SER A 456 ALA A 462 1 7 HELIX 26 26 GLU A 496 ALA A 507 1 12 HELIX 27 27 CYS A 511 THR A 522 1 12 HELIX 28 28 GLY A 523 ASN A 529 1 7 SHEET 1 A 6 PHE A 187 ARG A 195 0 SHEET 2 A 6 GLU A 200 MET A 206 -1 O VAL A 201 N LEU A 193 SHEET 3 A 6 LEU A 212 ASN A 219 -1 O CYS A 215 N PHE A 202 SHEET 4 A 6 ASP A 259 MET A 264 -1 O MET A 264 N ALA A 214 SHEET 5 A 6 LEU A 250 GLU A 255 -1 N ALA A 251 O VAL A 263 SHEET 6 A 6 GLY A 509 THR A 510 -1 O GLY A 509 N ALA A 253 SHEET 1 B 2 ILE A 310 ILE A 311 0 SHEET 2 B 2 VAL A 337 GLU A 338 -1 O VAL A 337 N ILE A 311 SHEET 1 C 2 VAL A 320 LEU A 322 0 SHEET 2 C 2 VAL A 328 ILE A 330 -1 O ARG A 329 N LEU A 321 LINK OD2 ASP A 332 MG MG A 563 1555 1555 2.16 LINK OD1 ASP A 332 MG MG A 564 1555 1555 2.14 LINK O3B ADP A 562 MG MG A 563 1555 1555 2.14 LINK O2A ADP A 562 MG MG A 563 1555 1555 2.14 LINK O2B ADP A 562 MG MG A 564 1555 1555 2.14 LINK MG MG A 563 O HOH A 582 1555 1555 1.99 LINK MG MG A 563 O HOH A 583 1555 1555 2.05 LINK MG MG A 563 O HOH A 761 1555 1555 2.09 LINK MG MG A 564 O HOH A 584 1555 1555 2.02 LINK MG MG A 564 O HOH A 585 1555 1555 2.16 LINK MG MG A 564 O HOH A 586 1555 1555 2.19 LINK MG MG A 564 O HOH A 587 1555 1555 2.12 SITE 1 AC1 4 ASP A 332 HOH A 582 HOH A 583 HOH A 761 SITE 1 AC2 5 ASP A 332 HOH A 584 HOH A 585 HOH A 586 SITE 2 AC2 5 HOH A 587 SITE 1 AC3 3 LEU A 166 GLN A 173 HOH A 654 SITE 1 AC4 3 GLY A 387 PHE A 389 ARG A 390 SITE 1 AC5 26 LEU A 193 GLY A 194 ARG A 195 GLY A 196 SITE 2 AC5 26 GLY A 197 ALA A 214 LYS A 216 MET A 264 SITE 3 AC5 26 THR A 265 MET A 267 LEU A 321 ASP A 332 SITE 4 AC5 26 HOH A 581 HOH A 582 HOH A 583 HOH A 585 SITE 5 AC5 26 HOH A 586 HOH A 587 HOH A 588 HOH A 666 SITE 6 AC5 26 HOH A 671 HOH A 699 HOH A 759 HOH A 760 SITE 7 AC5 26 HOH A 761 HOH A 838 CRYST1 65.540 82.947 107.144 90.00 93.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015258 0.000000 0.000801 0.00000 SCALE2 0.000000 0.012056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009346 0.00000