HEADER HYDROLASE 04-FEB-08 3C6C TITLE CRYSTAL STRUCTURE OF A PUTATIVE 3-KETO-5-AMINOHEXANOATE CLEAVAGE TITLE 2 ENZYME (REUT_C6226) FROM RALSTONIA EUTROPHA JMP134 AT 1.72 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 STRAIN: JMP134; SOURCE 5 GENE: YP_293392.1, REUT_C6226; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DUF849 FAMILY PROTEIN, TIM BETA/ALPHA-BARREL FOLD, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3C6C 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3C6C 1 REMARK LINK REVDAT 5 25-OCT-17 3C6C 1 REMARK REVDAT 4 13-JUL-11 3C6C 1 VERSN REVDAT 3 23-MAR-11 3C6C 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3C6C 1 VERSN REVDAT 1 19-FEB-08 3C6C 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME JRNL TITL 2 (YP_293392.1) FROM RALSTONIA EUTROPHA JMP134 AT 1.72 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3051 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 391 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2316 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1569 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3154 ; 1.469 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3849 ; 1.634 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 5.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;34.875 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;12.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2602 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1492 ; 1.527 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 603 ; 0.444 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2412 ; 2.300 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 824 ; 3.740 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 733 ; 5.445 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9292 39.8619 49.9412 REMARK 3 T TENSOR REMARK 3 T11: -0.0298 T22: -0.0315 REMARK 3 T33: -0.0195 T12: 0.0160 REMARK 3 T13: -0.0291 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.1893 L22: 0.6633 REMARK 3 L33: 0.9667 L12: -0.0274 REMARK 3 L13: -0.2387 L23: 0.1958 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.0158 S13: -0.0156 REMARK 3 S21: 0.1012 S22: 0.0247 S23: -0.0920 REMARK 3 S31: 0.1132 S32: 0.0396 S33: -0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO REMARK 3 ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. AN X-RAY EMISSION SPECTRUM AND AN X-RAY FLUORESCENCE SCAN REMARK 3 NEAR NI ABSORPTION EDGE TAKEN FROM THE SAMPLE VERIFY THE REMARK 3 PRESENCE OF NI METAL. THE OCCUPANCY WAS ADJUSTED TO REFLECT REMARK 3 THE DENSITY AND TO PROVIDE A SIMILAR B-FACTOR AS THE REMARK 3 COORDINATING PROTEIN ATOMS. REMARK 3 5. EDO, ACT AND PEG FROM THE CRYSTALLIZATION BUFFER WERE REMARK 3 MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 3C6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97964 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43691 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 38.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M LITHIUM ACETATE, 20.0% REMARK 280 PEG 3350, NO BUFFER PH 7.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.16950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.69850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.51400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.16950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.69850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.51400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.16950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.69850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.51400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.16950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.69850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.51400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.33900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 121.39700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 50.33900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 133.02800 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 121.39700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 133.02800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 296 REMARK 465 ALA A 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 470 LYS A 4 CE NZ REMARK 470 GLU A 104 CD OE1 OE2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 ARG A 229 CD NE CZ NH1 NH2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 547 O HOH A 568 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -43.71 -150.22 REMARK 500 LYS A 54 -74.90 -81.43 REMARK 500 ASP A 97 94.12 -171.42 REMARK 500 ILE A 129 57.11 -91.77 REMARK 500 TRP A 200 62.66 -113.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 298 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HIS A 49 NE2 98.0 REMARK 620 3 GLU A 250 OE2 110.5 90.0 REMARK 620 4 HOH A 351 O 89.8 95.8 158.0 REMARK 620 5 HOH A 353 O 93.5 167.0 91.6 78.1 REMARK 620 6 HOH A 440 O 172.9 85.8 75.4 83.9 82.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381418 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3C6C A 1 297 UNP Q46MU0 Q46MU0_RALEJ 1 297 SEQADV 3C6C MSE A -18 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C GLY A -17 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C SER A -16 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C ASP A -15 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C LYS A -14 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C ILE A -13 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C HIS A -12 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C HIS A -11 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C HIS A -10 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C HIS A -9 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C HIS A -8 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C HIS A -7 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C GLU A -6 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C ASN A -5 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C LEU A -4 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C TYR A -3 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C PHE A -2 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C GLN A -1 UNP Q46MU0 EXPRESSION TAG SEQADV 3C6C GLY A 0 UNP Q46MU0 EXPRESSION TAG SEQRES 1 A 316 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 316 ASN LEU TYR PHE GLN GLY MSE SER ARG LYS VAL ILE LEU SEQRES 3 A 316 THR CYS ALA VAL THR GLY ASN ALA PRO PHE ASN PRO LYS SEQRES 4 A 316 HIS PRO SER MSE PRO ILE THR PRO ALA GLN ILE ALA ASP SEQRES 5 A 316 ALA CYS VAL GLU ALA ALA LYS ALA GLY ALA SER VAL ALA SEQRES 6 A 316 HIS ILE HIS VAL ARG ASP PRO LYS THR GLY GLY GLY SER SEQRES 7 A 316 ARG ASP PRO VAL LEU PHE LYS GLU VAL VAL ASP ARG VAL SEQRES 8 A 316 ARG SER SER GLY THR ASP ILE VAL LEU ASN LEU THR CYS SEQRES 9 A 316 GLY LEU GLY ALA PHE LEU LEU PRO ASP PRO GLU ASP GLU SEQRES 10 A 316 SER LYS ALA LEU PRO GLU SER ASP VAL VAL PRO VAL ALA SEQRES 11 A 316 GLU ARG VAL LYS HIS LEU GLU ASP CYS LEU PRO GLU ILE SEQRES 12 A 316 ALA SER LEU ASP ILE THR THR GLY ASN GLN VAL GLU GLY SEQRES 13 A 316 LYS LEU GLU PHE VAL TYR LEU ASN THR THR ARG THR LEU SEQRES 14 A 316 ARG ALA MSE ALA ARG ARG PHE GLN GLU LEU GLY ILE LYS SEQRES 15 A 316 PRO GLU LEU GLU VAL PHE SER PRO GLY ASP ILE LEU PHE SEQRES 16 A 316 GLY LYS GLN LEU ILE GLU GLU GLY LEU ILE ASP GLY VAL SEQRES 17 A 316 PRO LEU PHE GLN MSE VAL LEU GLY VAL LEU TRP GLY ALA SEQRES 18 A 316 PRO ALA SER THR GLU THR MSE ILE TYR GLN ARG ASN LEU SEQRES 19 A 316 ILE PRO ALA ASN ALA GLN TRP ALA ALA PHE GLY ILE GLY SEQRES 20 A 316 ARG ASP GLN MSE PRO MSE MSE ALA GLN ALA ALA LEU LEU SEQRES 21 A 316 GLY GLY ASN VAL ARG VAL GLY LEU GLU ASP ASN LEU TYR SEQRES 22 A 316 LEU SER ARG GLY VAL PHE ALA THR ASN GLY GLN LEU VAL SEQRES 23 A 316 GLU ARG ALA ARG THR VAL ILE GLU HIS LEU GLY MSE SER SEQRES 24 A 316 VAL ALA THR PRO ASP GLU ALA ARG ASP ILE MSE GLY LEU SEQRES 25 A 316 SER ARG PRO ALA MODRES 3C6C MSE A 24 MET SELENOMETHIONINE MODRES 3C6C MSE A 153 MET SELENOMETHIONINE MODRES 3C6C MSE A 194 MET SELENOMETHIONINE MODRES 3C6C MSE A 209 MET SELENOMETHIONINE MODRES 3C6C MSE A 232 MET SELENOMETHIONINE MODRES 3C6C MSE A 234 MET SELENOMETHIONINE MODRES 3C6C MSE A 235 MET SELENOMETHIONINE MODRES 3C6C MSE A 279 MET SELENOMETHIONINE MODRES 3C6C MSE A 291 MET SELENOMETHIONINE HET MSE A 24 8 HET MSE A 153 13 HET MSE A 194 8 HET MSE A 209 8 HET MSE A 232 8 HET MSE A 234 8 HET MSE A 235 8 HET MSE A 279 8 HET MSE A 291 8 HET NI A 298 1 HET ACT A 299 4 HET EDO A 300 4 HET EDO A 301 4 HET EDO A 302 4 HET PEG A 303 7 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *391(H2 O) HELIX 1 1 THR A 27 GLY A 42 1 16 HELIX 2 2 ASP A 61 SER A 74 1 14 HELIX 3 3 PRO A 109 VAL A 114 1 6 HELIX 4 4 VAL A 114 LEU A 121 1 8 HELIX 5 5 THR A 146 GLY A 161 1 16 HELIX 6 6 SER A 170 GLU A 183 1 14 HELIX 7 7 SER A 205 ASN A 214 1 10 HELIX 8 8 ILE A 227 ARG A 229 5 3 HELIX 9 9 ASP A 230 LEU A 241 1 12 HELIX 10 10 THR A 262 LEU A 277 1 16 HELIX 11 11 THR A 283 GLY A 292 1 10 SHEET 1 A 2 LYS A 4 VAL A 5 0 SHEET 2 A 2 SER A 280 VAL A 281 1 O SER A 280 N VAL A 5 SHEET 1 B 8 GLN A 221 PHE A 225 0 SHEET 2 B 8 LEU A 191 VAL A 195 1 N MSE A 194 O ALA A 223 SHEET 3 B 8 LYS A 163 VAL A 168 1 N LEU A 166 O LEU A 191 SHEET 4 B 8 ILE A 124 ASP A 128 1 N LEU A 127 O GLU A 167 SHEET 5 B 8 VAL A 80 THR A 84 1 N LEU A 81 O ILE A 124 SHEET 6 B 8 VAL A 45 ILE A 48 1 N ALA A 46 O ASN A 82 SHEET 7 B 8 LEU A 7 ALA A 10 1 N CYS A 9 O VAL A 45 SHEET 8 B 8 VAL A 245 VAL A 247 1 O VAL A 247 N ALA A 10 SHEET 1 C 2 VAL A 50 ARG A 51 0 SHEET 2 C 2 GLY A 58 SER A 59 -1 O SER A 59 N VAL A 50 SHEET 1 D 4 ASP A 106 VAL A 107 0 SHEET 2 D 4 ALA A 89 LEU A 91 -1 N PHE A 90 O ASP A 106 SHEET 3 D 4 LEU A 139 TYR A 143 -1 O VAL A 142 N LEU A 91 SHEET 4 D 4 GLY A 132 GLU A 136 -1 N GLN A 134 O PHE A 141 SHEET 1 E 2 PRO A 93 ASP A 94 0 SHEET 2 E 2 ASP A 97 ALA A 101 -1 O LYS A 100 N ASP A 94 SHEET 1 F 2 TYR A 254 SER A 256 0 SHEET 2 F 2 VAL A 259 PHE A 260 -1 O VAL A 259 N SER A 256 LINK C SER A 23 N MSE A 24 1555 1555 1.32 LINK C MSE A 24 N PRO A 25 1555 1555 1.37 LINK C ALA A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N ALA A 154 1555 1555 1.32 LINK C GLN A 193 N MSE A 194 1555 1555 1.32 LINK C MSE A 194 N VAL A 195 1555 1555 1.32 LINK C THR A 208 N MSE A 209 1555 1555 1.32 LINK C MSE A 209 N ILE A 210 1555 1555 1.33 LINK C GLN A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N PRO A 233 1555 1555 1.35 LINK C PRO A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N MSE A 235 1555 1555 1.32 LINK C MSE A 235 N ALA A 236 1555 1555 1.33 LINK C GLY A 278 N MSE A 279 1555 1555 1.32 LINK C MSE A 279 N SER A 280 1555 1555 1.33 LINK C ILE A 290 N MSE A 291 1555 1555 1.32 LINK C MSE A 291 N GLY A 292 1555 1555 1.32 LINK NE2 HIS A 47 NI NI A 298 1555 1555 2.26 LINK NE2 HIS A 49 NI NI A 298 1555 1555 2.33 LINK OE2 GLU A 250 NI NI A 298 1555 1555 2.20 LINK NI NI A 298 O HOH A 351 1555 1555 2.10 LINK NI NI A 298 O HOH A 353 1555 1555 2.40 LINK NI NI A 298 O HOH A 440 1555 1555 2.19 CISPEP 1 LEU A 199 TRP A 200 0 4.53 SITE 1 AC1 6 HIS A 47 HIS A 49 GLU A 250 HOH A 351 SITE 2 AC1 6 HOH A 353 HOH A 440 SITE 1 AC2 5 VAL A 198 ILE A 227 GLU A 250 ASP A 251 SITE 2 AC2 5 HOH A 407 SITE 1 AC3 4 ASP A 70 ARG A 73 HOH A 354 HOH A 572 SITE 1 AC4 4 LEU A 121 PRO A 122 LEU A 160 GLY A 161 SITE 1 AC5 6 SER A 23 PHE A 260 THR A 262 HOH A 499 SITE 2 AC5 6 HOH A 559 HOH A 562 SITE 1 AC6 12 THR A 12 ALA A 15 ILE A 227 GLY A 228 SITE 2 AC6 12 LEU A 249 GLU A 250 ASP A 251 LEU A 253 SITE 3 AC6 12 HOH A 323 HOH A 359 HOH A 366 HOH A 591 CRYST1 50.339 121.397 133.028 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019865 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007517 0.00000