HEADER SIGNALING PROTEIN 04-FEB-08 3C6O TITLE SMALL MOLECULE AGONISTS AND ANTAGONISTS OF F-BOX PROTEIN-SUBSTRATE TITLE 2 INTERACTIONS IN AUXIN PERCEPTION AND SIGNALING COMPND MOL_ID: 1; COMPND 2 MOLECULE: SKP1-LIKE PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SKP1-LIKE 1, UFO-BINDING PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSPORT INHIBITOR RESPONSE 1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: F-BOX/LRR-REPEAT PROTEIN 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SKP1A, ASK1, SKP1, UIP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: THALE CRESS; SOURCE 12 ORGANISM_TAXID: 3702; SOURCE 13 GENE: TIR1, FBL1, WEI1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AUXIN, UBIQUITIN LIGASE, F-BOX, SMALL MOLECULE, CHEMICAL BIOLOGY, KEYWDS 2 PLANT PHYSIOLOGY, AUXIN SIGNALING PATHWAY, CHROMOSOME PARTITION, KEYWDS 3 CYTOSKELETON, DEVELOPMENTAL PROTEIN, ETHYLENE SIGNALING PATHWAY, KEYWDS 4 NUCLEUS, UBL CONJUGATION PATHWAY, CELL CYCLE, LEUCINE-RICH REPEAT, KEYWDS 5 PLANT DEFENSE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.TAN REVDAT 5 30-AUG-23 3C6O 1 REMARK REVDAT 4 14-OCT-20 3C6O 1 REMARK HETSYN REVDAT 3 23-NOV-11 3C6O 1 VERSN REVDAT 2 24-FEB-09 3C6O 1 VERSN REVDAT 1 22-APR-08 3C6O 0 JRNL AUTH K.HAYASHI,X.TAN,N.ZHENG,T.HATATE,Y.KIMURA,S.KEPINSKI, JRNL AUTH 2 H.NOZAKI JRNL TITL SMALL-MOLECULE AGONISTS AND ANTAGONISTS OF F-BOX JRNL TITL 2 PROTEIN-SUBSTRATE INTERACTIONS IN AUXIN PERCEPTION AND JRNL TITL 3 SIGNALING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 5632 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18391211 JRNL DOI 10.1073/PNAS.0711146105 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 46.1 REMARK 3 NUMBER OF REFLECTIONS : 23841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1119 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 29.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -3.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.971 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.458 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5236 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7104 ; 2.767 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 639 ; 7.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;35.979 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 921 ;20.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;20.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 817 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3850 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2893 ; 0.283 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3650 ; 0.333 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3286 ; 0.981 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5197 ; 1.683 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2211 ; 2.792 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1907 ; 4.558 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-14% PEG 40,000, 100MM BTP PH6.0, REMARK 280 200MM NACL, EVAPORATION, TEMPERATURE 277K, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.41800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 ASP A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 PHE A 16 REMARK 465 GLU A 17 REMARK 465 VAL A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 VAL A 22 REMARK 465 HIS A 31 REMARK 465 MET A 32 REMARK 465 VAL A 33 REMARK 465 GLU A 34 REMARK 465 ASP A 35 REMARK 465 ASP A 36 REMARK 465 CYS A 37 REMARK 465 VAL A 38 REMARK 465 ASP A 39 REMARK 465 ASN A 40 REMARK 465 GLY A 41 REMARK 465 VAL A 42 REMARK 465 PRO A 43 REMARK 465 LEU A 44 REMARK 465 PRO A 45 REMARK 465 ASN A 46 REMARK 465 VAL A 47 REMARK 465 THR A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 CYS A 59 REMARK 465 LYS A 60 REMARK 465 ARG A 61 REMARK 465 HIS A 62 REMARK 465 VAL A 63 REMARK 465 GLU A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 SER A 68 REMARK 465 LYS A 69 REMARK 465 ALA A 70 REMARK 465 GLU A 71 REMARK 465 ALA A 72 REMARK 465 VAL A 73 REMARK 465 GLU A 74 REMARK 465 GLY A 75 REMARK 465 ALA A 76 REMARK 465 ALA A 77 REMARK 465 THR A 78 REMARK 465 SER A 79 REMARK 465 ASP A 80 REMARK 465 ASP A 81 REMARK 465 ASP A 82 REMARK 465 LEU A 83 REMARK 465 LYS A 84 REMARK 465 ALA A 85 REMARK 465 TRP A 86 REMARK 465 ASP A 87 REMARK 465 ALA A 88 REMARK 465 ASP A 89 REMARK 465 PHE A 90 REMARK 465 MET A 91 REMARK 465 LYS A 92 REMARK 465 ILE A 93 REMARK 465 ASP A 94 REMARK 465 GLN A 95 REMARK 465 ALA A 96 REMARK 465 THR A 97 REMARK 465 LEU A 98 REMARK 465 PHE A 99 REMARK 465 GLU A 100 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 ILE B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 PHE B 9 REMARK 465 ASP B 577 REMARK 465 GLN B 578 REMARK 465 ASP B 579 REMARK 465 SER B 580 REMARK 465 THR B 581 REMARK 465 MET B 582 REMARK 465 ARG B 583 REMARK 465 PHE B 584 REMARK 465 SER B 585 REMARK 465 ARG B 586 REMARK 465 GLN B 587 REMARK 465 ILE B 588 REMARK 465 ILE B 589 REMARK 465 THR B 590 REMARK 465 THR B 591 REMARK 465 ASN B 592 REMARK 465 GLY B 593 REMARK 465 LEU B 594 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O34 IHP B 1000 O HOH B 1027 1.46 REMARK 500 NZ LYS B 74 O26 IHP B 1000 1.84 REMARK 500 O43 IHP B 1000 O HOH B 1160 1.87 REMARK 500 NE2 HIS B 178 O HOH B 1165 1.99 REMARK 500 CB SER A 26 N ASN A 109 2.00 REMARK 500 O HOH B 1005 O HOH B 1160 2.02 REMARK 500 O ALA A 105 O LEU A 108 2.08 REMARK 500 O VAL B 352 NH2 ARG B 382 2.17 REMARK 500 CD PRO B 10 O HOH B 1050 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 311 CB CYS B 311 SG -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 311 CA - CB - SG ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU B 364 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG B 394 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU B 404 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU B 420 CB - CG - CD1 ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG B 435 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 436 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 436 NH1 - CZ - NH2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG B 436 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 436 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU B 526 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 24 108.78 95.81 REMARK 500 GLU A 25 -72.32 -168.87 REMARK 500 SER A 26 89.21 -41.32 REMARK 500 GLN A 27 -11.10 -36.49 REMARK 500 THR A 28 54.54 -68.96 REMARK 500 ILE A 29 -138.11 -164.11 REMARK 500 LEU A 52 -1.54 -48.16 REMARK 500 LYS A 54 -7.50 61.67 REMARK 500 GLU A 57 40.09 -70.83 REMARK 500 LEU A 103 78.44 -18.87 REMARK 500 ALA A 104 48.15 -167.26 REMARK 500 ALA A 105 -74.18 -7.18 REMARK 500 ASN A 106 -41.32 -23.87 REMARK 500 TYR A 107 -113.44 -63.41 REMARK 500 LEU A 108 126.69 8.29 REMARK 500 LYS A 111 -66.20 -22.16 REMARK 500 MET A 124 -27.17 -34.41 REMARK 500 LYS A 126 128.31 -36.12 REMARK 500 THR A 135 -77.73 -47.30 REMARK 500 THR A 136 2.65 -62.28 REMARK 500 PHE A 137 -138.35 -110.57 REMARK 500 ASN A 138 37.54 -142.46 REMARK 500 PRO A 145 -41.02 -20.60 REMARK 500 GLU B 11 -70.16 -2.23 REMARK 500 GLU B 15 -58.45 -29.05 REMARK 500 ASN B 28 -46.57 -29.98 REMARK 500 LYS B 76 154.42 -38.56 REMARK 500 PHE B 79 5.32 -64.76 REMARK 500 TYR B 104 69.58 -108.15 REMARK 500 TRP B 106 21.53 -66.01 REMARK 500 ASN B 131 21.46 -74.07 REMARK 500 GLU B 165 8.47 57.98 REMARK 500 ASP B 181 -18.15 -38.58 REMARK 500 ALA B 234 56.37 -119.43 REMARK 500 ALA B 247 151.98 175.50 REMARK 500 GLU B 248 126.05 -39.39 REMARK 500 LEU B 267 117.34 -37.40 REMARK 500 THR B 300 42.31 -102.85 REMARK 500 LEU B 316 121.45 -39.24 REMARK 500 LEU B 322 172.66 -59.83 REMARK 500 GLU B 326 177.08 66.47 REMARK 500 GLU B 349 60.41 -156.45 REMARK 500 PRO B 355 94.50 -41.71 REMARK 500 ALA B 358 52.71 -109.33 REMARK 500 THR B 360 -156.56 -125.05 REMARK 500 GLU B 375 -16.63 -147.77 REMARK 500 ASP B 413 125.46 -36.37 REMARK 500 CYS B 431 71.89 -109.23 REMARK 500 SER B 440 -178.42 -170.48 REMARK 500 CYS B 516 -156.12 -93.65 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 23 LEU A 24 -102.85 REMARK 500 GLN A 27 THR A 28 147.88 REMARK 500 ILE A 29 ALA A 30 84.85 REMARK 500 ILE A 102 LEU A 103 126.50 REMARK 500 ALA A 104 ALA A 105 117.42 REMARK 500 ASN A 106 TYR A 107 -132.79 REMARK 500 TYR A 107 LEU A 108 86.44 REMARK 500 LEU A 108 ASN A 109 -130.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2S2 B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C6N RELATED DB: PDB REMARK 900 RELATED ID: 3C6P RELATED DB: PDB DBREF 3C6O A 1 160 UNP Q39255 SKP1A_ARATH 1 160 DBREF 3C6O B 1 594 UNP Q570C0 TIR1_ARATH 1 594 SEQRES 1 A 160 MET SER ALA LYS LYS ILE VAL LEU LYS SER SER ASP GLY SEQRES 2 A 160 GLU SER PHE GLU VAL GLU GLU ALA VAL ALA LEU GLU SER SEQRES 3 A 160 GLN THR ILE ALA HIS MET VAL GLU ASP ASP CYS VAL ASP SEQRES 4 A 160 ASN GLY VAL PRO LEU PRO ASN VAL THR SER LYS ILE LEU SEQRES 5 A 160 ALA LYS VAL ILE GLU TYR CYS LYS ARG HIS VAL GLU ALA SEQRES 6 A 160 ALA ALA SER LYS ALA GLU ALA VAL GLU GLY ALA ALA THR SEQRES 7 A 160 SER ASP ASP ASP LEU LYS ALA TRP ASP ALA ASP PHE MET SEQRES 8 A 160 LYS ILE ASP GLN ALA THR LEU PHE GLU LEU ILE LEU ALA SEQRES 9 A 160 ALA ASN TYR LEU ASN ILE LYS ASN LEU LEU ASP LEU THR SEQRES 10 A 160 CYS GLN THR VAL ALA ASP MET ILE LYS GLY LYS THR PRO SEQRES 11 A 160 GLU GLU ILE ARG THR THR PHE ASN ILE LYS ASN ASP PHE SEQRES 12 A 160 THR PRO GLU GLU GLU GLU GLU VAL ARG ARG GLU ASN GLN SEQRES 13 A 160 TRP ALA PHE GLU SEQRES 1 B 594 MET GLN LYS ARG ILE ALA LEU SER PHE PRO GLU GLU VAL SEQRES 2 B 594 LEU GLU HIS VAL PHE SER PHE ILE GLN LEU ASP LYS ASP SEQRES 3 B 594 ARG ASN SER VAL SER LEU VAL CYS LYS SER TRP TYR GLU SEQRES 4 B 594 ILE GLU ARG TRP CYS ARG ARG LYS VAL PHE ILE GLY ASN SEQRES 5 B 594 CYS TYR ALA VAL SER PRO ALA THR VAL ILE ARG ARG PHE SEQRES 6 B 594 PRO LYS VAL ARG SER VAL GLU LEU LYS GLY LYS PRO HIS SEQRES 7 B 594 PHE ALA ASP PHE ASN LEU VAL PRO ASP GLY TRP GLY GLY SEQRES 8 B 594 TYR VAL TYR PRO TRP ILE GLU ALA MET SER SER SER TYR SEQRES 9 B 594 THR TRP LEU GLU GLU ILE ARG LEU LYS ARG MET VAL VAL SEQRES 10 B 594 THR ASP ASP CYS LEU GLU LEU ILE ALA LYS SER PHE LYS SEQRES 11 B 594 ASN PHE LYS VAL LEU VAL LEU SER SER CYS GLU GLY PHE SEQRES 12 B 594 SER THR ASP GLY LEU ALA ALA ILE ALA ALA THR CYS ARG SEQRES 13 B 594 ASN LEU LYS GLU LEU ASP LEU ARG GLU SER ASP VAL ASP SEQRES 14 B 594 ASP VAL SER GLY HIS TRP LEU SER HIS PHE PRO ASP THR SEQRES 15 B 594 TYR THR SER LEU VAL SER LEU ASN ILE SER CYS LEU ALA SEQRES 16 B 594 SER GLU VAL SER PHE SER ALA LEU GLU ARG LEU VAL THR SEQRES 17 B 594 ARG CYS PRO ASN LEU LYS SER LEU LYS LEU ASN ARG ALA SEQRES 18 B 594 VAL PRO LEU GLU LYS LEU ALA THR LEU LEU GLN ARG ALA SEQRES 19 B 594 PRO GLN LEU GLU GLU LEU GLY THR GLY GLY TYR THR ALA SEQRES 20 B 594 GLU VAL ARG PRO ASP VAL TYR SER GLY LEU SER VAL ALA SEQRES 21 B 594 LEU SER GLY CYS LYS GLU LEU ARG CYS LEU SER GLY PHE SEQRES 22 B 594 TRP ASP ALA VAL PRO ALA TYR LEU PRO ALA VAL TYR SER SEQRES 23 B 594 VAL CYS SER ARG LEU THR THR LEU ASN LEU SER TYR ALA SEQRES 24 B 594 THR VAL GLN SER TYR ASP LEU VAL LYS LEU LEU CYS GLN SEQRES 25 B 594 CYS PRO LYS LEU GLN ARG LEU TRP VAL LEU ASP TYR ILE SEQRES 26 B 594 GLU ASP ALA GLY LEU GLU VAL LEU ALA SER THR CYS LYS SEQRES 27 B 594 ASP LEU ARG GLU LEU ARG VAL PHE PRO SER GLU PRO PHE SEQRES 28 B 594 VAL MET GLU PRO ASN VAL ALA LEU THR GLU GLN GLY LEU SEQRES 29 B 594 VAL SER VAL SER MET GLY CYS PRO LYS LEU GLU SER VAL SEQRES 30 B 594 LEU TYR PHE CYS ARG GLN MET THR ASN ALA ALA LEU ILE SEQRES 31 B 594 THR ILE ALA ARG ASN ARG PRO ASN MET THR ARG PHE ARG SEQRES 32 B 594 LEU CYS ILE ILE GLU PRO LYS ALA PRO ASP TYR LEU THR SEQRES 33 B 594 LEU GLU PRO LEU ASP ILE GLY PHE GLY ALA ILE VAL GLU SEQRES 34 B 594 HIS CYS LYS ASP LEU ARG ARG LEU SER LEU SER GLY LEU SEQRES 35 B 594 LEU THR ASP LYS VAL PHE GLU TYR ILE GLY THR TYR ALA SEQRES 36 B 594 LYS LYS MET GLU MET LEU SER VAL ALA PHE ALA GLY ASP SEQRES 37 B 594 SER ASP LEU GLY MET HIS HIS VAL LEU SER GLY CYS ASP SEQRES 38 B 594 SER LEU ARG LYS LEU GLU ILE ARG ASP CYS PRO PHE GLY SEQRES 39 B 594 ASP LYS ALA LEU LEU ALA ASN ALA SER LYS LEU GLU THR SEQRES 40 B 594 MET ARG SER LEU TRP MET SER SER CYS SER VAL SER PHE SEQRES 41 B 594 GLY ALA CYS LYS LEU LEU GLY GLN LYS MET PRO LYS LEU SEQRES 42 B 594 ASN VAL GLU VAL ILE ASP GLU ARG GLY ALA PRO ASP SER SEQRES 43 B 594 ARG PRO GLU SER CYS PRO VAL GLU ARG VAL PHE ILE TYR SEQRES 44 B 594 ARG THR VAL ALA GLY PRO ARG PHE ASP MET PRO GLY PHE SEQRES 45 B 594 VAL TRP ASN MET ASP GLN ASP SER THR MET ARG PHE SER SEQRES 46 B 594 ARG GLN ILE ILE THR THR ASN GLY LEU HET IHP B1000 36 HET 2S2 B1001 17 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM 2S2 (2S)-2-(1H-INDOL-3-YL)HEXANOIC ACID HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 IHP C6 H18 O24 P6 FORMUL 4 2S2 C14 H17 N O2 FORMUL 5 HOH *226(H2 O) HELIX 1 1 ILE A 110 LYS A 126 1 17 HELIX 2 2 THR A 129 PHE A 137 1 9 HELIX 3 3 THR A 144 PHE A 159 1 16 HELIX 4 4 GLU B 11 PHE B 20 1 10 HELIX 5 5 LEU B 23 LEU B 32 1 10 HELIX 6 6 CYS B 34 CYS B 44 1 11 HELIX 7 7 ASN B 52 VAL B 56 5 5 HELIX 8 8 SER B 57 PHE B 65 1 9 HELIX 9 9 PRO B 77 ASP B 81 5 5 HELIX 10 10 VAL B 93 TYR B 104 1 12 HELIX 11 11 THR B 118 PHE B 129 1 12 HELIX 12 12 THR B 145 CYS B 155 1 11 HELIX 13 13 SER B 172 PHE B 179 5 8 HELIX 14 14 SER B 199 CYS B 210 1 12 HELIX 15 15 PRO B 223 ALA B 234 1 12 HELIX 16 16 ARG B 250 GLY B 263 1 14 HELIX 17 17 VAL B 277 TYR B 285 5 9 HELIX 18 18 GLN B 302 GLN B 312 1 11 HELIX 19 19 ILE B 325 CYS B 337 1 13 HELIX 20 20 THR B 360 CYS B 371 1 12 HELIX 21 21 THR B 385 ARG B 396 1 12 HELIX 22 22 LEU B 420 CYS B 431 1 12 HELIX 23 23 THR B 444 ALA B 455 1 12 HELIX 24 24 SER B 469 CYS B 480 1 12 HELIX 25 25 GLY B 494 ASN B 501 1 8 HELIX 26 26 ALA B 502 MET B 508 5 7 HELIX 27 27 SER B 519 MET B 530 1 12 HELIX 28 28 ALA B 543 ARG B 547 5 5 SHEET 1 A21 LYS B 47 ILE B 50 0 SHEET 2 A21 SER B 70 LYS B 74 1 O GLU B 72 N ILE B 50 SHEET 3 A21 GLU B 109 LYS B 113 1 O LYS B 113 N LEU B 73 SHEET 4 A21 VAL B 134 SER B 138 1 O VAL B 134 N ILE B 110 SHEET 5 A21 GLU B 160 ASP B 162 1 O ASP B 162 N LEU B 137 SHEET 6 A21 SER B 188 ASN B 190 1 O ASN B 190 N LEU B 161 SHEET 7 A21 SER B 215 LYS B 217 1 O SER B 215 N LEU B 189 SHEET 8 A21 GLU B 239 GLY B 241 1 O GLY B 241 N LEU B 216 SHEET 9 A21 CYS B 269 SER B 271 1 O CYS B 269 N LEU B 240 SHEET 10 A21 THR B 293 LEU B 296 1 O ASN B 295 N LEU B 270 SHEET 11 A21 ARG B 318 LEU B 322 1 O TRP B 320 N LEU B 296 SHEET 12 A21 GLU B 342 PHE B 346 1 O GLU B 342 N LEU B 319 SHEET 13 A21 SER B 376 CYS B 381 1 O LEU B 378 N VAL B 345 SHEET 14 A21 ARG B 401 ILE B 406 1 O ARG B 401 N VAL B 377 SHEET 15 A21 ARG B 436 SER B 438 1 O ARG B 436 N PHE B 402 SHEET 16 A21 MET B 460 ALA B 464 1 O MET B 460 N LEU B 437 SHEET 17 A21 LYS B 485 ARG B 489 1 O LYS B 485 N LEU B 461 SHEET 18 A21 SER B 510 SER B 514 1 O TRP B 512 N ILE B 488 SHEET 19 A21 ARG B 555 ARG B 560 -1 O ILE B 558 N LEU B 511 SHEET 20 A21 LEU B 533 ILE B 538 -1 N ASN B 534 O TYR B 559 SHEET 21 A21 VAL B 573 ASN B 575 -1 O TRP B 574 N VAL B 537 SHEET 1 B 2 GLU B 141 SER B 144 0 SHEET 2 B 2 ASP B 167 ASP B 169 1 O ASP B 169 N PHE B 143 CISPEP 1 LEU A 103 ALA A 104 0 11.23 SITE 1 AC1 11 LYS B 74 HIS B 78 LYS B 113 ARG B 114 SITE 2 AC1 11 ARG B 344 ARG B 401 ARG B 403 ARG B 436 SITE 3 AC1 11 MET B 460 ARG B 484 LYS B 485 SITE 1 AC2 8 HIS B 78 ARG B 403 LEU B 404 CYS B 405 SITE 2 AC2 8 ARG B 436 SER B 438 LEU B 439 ALA B 464 CRYST1 102.264 80.836 124.748 90.00 104.87 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009779 0.000000 0.002596 0.00000 SCALE2 0.000000 0.012371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008294 0.00000