HEADER TRANSFERASE 06-FEB-08 3C72 TITLE ENGINEERED RABGGTASE IN COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT ALPHA, RAB COMPND 5 GERANYLGERANYLTRANSFERASE SUBUNIT ALPHA, RAB GERANYL- COMPND 6 GERANYLTRANSFERASE SUBUNIT ALPHA, RAB GG TRANSFERASE ALPHA, RAB COMPND 7 GGTASE ALPHA; COMPND 8 EC: 2.5.1.60; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT BETA, RAB COMPND 14 GERANYLGERANYLTRANSFERASE SUBUNIT BETA, RAB GERANYL- COMPND 15 GERANYLTRANSFERASE SUBUNIT BETA, RAB GG TRANSFERASE BETA, RAB GGTASE COMPND 16 BETA; COMPND 17 EC: 2.5.1.60; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RABGGTA, GGTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGATEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: RABGGTB, GGTB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PEPTIDE INHIBITOR, RAB PRENYLATION, METAL-BINDING, PRENYLTRANSFERASE, KEYWDS 2 TRANSFERASE, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.GUO,Y.W.WU,K.T.TAN,R.S.BON,E.GUIU-ROZAS,C.DELON,U.T.NGUYEN, AUTHOR 2 S.WETZEL,S.ARNDT,R.S.GOODY,W.BLANKENFELDT,K.ALEXANDROV,H.WALDMANN REVDAT 5 30-AUG-23 3C72 1 REMARK SEQADV REVDAT 4 02-AUG-17 3C72 1 SOURCE REMARK REVDAT 3 13-JUL-11 3C72 1 VERSN REVDAT 2 24-FEB-09 3C72 1 VERSN REVDAT 1 22-JUL-08 3C72 0 JRNL AUTH Z.GUO,Y.W.WU,K.T.TAN,R.S.BON,E.GUIU-ROZAS,C.DELON, JRNL AUTH 2 T.U.NGUYEN,S.WETZEL,S.ARNDT,R.S.GOODY,W.BLANKENFELDT, JRNL AUTH 3 K.ALEXANDROV,H.WALDMANN JRNL TITL DEVELOPMENT OF SELECTIVE RABGGTASE INHIBITORS AND CRYSTAL JRNL TITL 2 STRUCTURE OF A RABGGTASE-INHIBITOR COMPLEX. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 47 3747 2008 JRNL REFN ISSN 1433-7851 JRNL PMID 18399557 JRNL DOI 10.1002/ANIE.200705795 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.187 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5187 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3474 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7050 ; 1.622 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8416 ; 1.061 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 633 ; 6.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;37.575 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 855 ;18.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 775 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5785 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1061 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1280 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3601 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2480 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2496 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.158 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.084 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3246 ; 0.878 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1271 ; 0.195 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5059 ; 1.451 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2250 ; 2.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1988 ; 2.958 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9602 18.1298 49.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1478 REMARK 3 T33: 0.1439 T12: 0.0002 REMARK 3 T13: 0.0042 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 59.8081 L22: 43.4898 REMARK 3 L33: 33.7313 L12: 27.1807 REMARK 3 L13: -6.8711 L23: -19.1301 REMARK 3 S TENSOR REMARK 3 S11: 1.1676 S12: -0.7535 S13: -2.0456 REMARK 3 S21: -0.7917 S22: -0.5897 S23: 0.5276 REMARK 3 S31: 0.8213 S32: -0.2110 S33: -0.5780 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5924 13.2708 32.6668 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.1507 REMARK 3 T33: 0.1731 T12: 0.0471 REMARK 3 T13: -0.0194 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 1.3703 L22: 2.0434 REMARK 3 L33: 4.9028 L12: -0.4976 REMARK 3 L13: 1.5750 L23: 0.5384 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: -0.1379 S13: -0.0530 REMARK 3 S21: 0.3919 S22: 0.0864 S23: -0.3359 REMARK 3 S31: -0.0689 S32: 0.0901 S33: 0.0442 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6433 -0.8840 -3.0884 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0684 REMARK 3 T33: 0.1556 T12: 0.0629 REMARK 3 T13: 0.0159 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.8481 L22: 1.5877 REMARK 3 L33: 2.4554 L12: -0.6896 REMARK 3 L13: 0.7991 L23: 0.3672 REMARK 3 S TENSOR REMARK 3 S11: 0.1599 S12: 0.2331 S13: -0.1511 REMARK 3 S21: -0.1691 S22: -0.0591 S23: 0.0593 REMARK 3 S31: 0.3580 S32: 0.0854 S33: -0.1008 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1991 30.0521 21.0606 REMARK 3 T TENSOR REMARK 3 T11: -0.0265 T22: 0.0445 REMARK 3 T33: 0.0525 T12: 0.0586 REMARK 3 T13: 0.0338 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.4149 L22: 1.9630 REMARK 3 L33: 1.8851 L12: -0.0896 REMARK 3 L13: 0.1304 L23: 0.5739 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: -0.1979 S13: 0.1900 REMARK 3 S21: 0.2427 S22: -0.0583 S23: 0.0798 REMARK 3 S31: -0.1461 S32: -0.3114 S33: 0.1267 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 209 B 331 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2132 20.7860 13.6511 REMARK 3 T TENSOR REMARK 3 T11: -0.0292 T22: 0.2704 REMARK 3 T33: 0.1443 T12: 0.0597 REMARK 3 T13: 0.0240 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.1238 L22: 2.6752 REMARK 3 L33: 2.1907 L12: 0.5493 REMARK 3 L13: 0.7631 L23: 1.1729 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.2882 S13: 0.1672 REMARK 3 S21: -0.0227 S22: -0.1670 S23: 0.4015 REMARK 3 S31: 0.0464 S32: -0.7225 S33: 0.1376 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 334 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3825 20.7407 23.2462 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: 0.0013 REMARK 3 T33: -0.0032 T12: 0.0009 REMARK 3 T13: 0.0003 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 8.2640 L22: 29.9989 REMARK 3 L33: 11.7534 L12: -8.1425 REMARK 3 L13: -0.1549 L23: -15.9169 REMARK 3 S TENSOR REMARK 3 S11: 1.0647 S12: -1.1808 S13: -1.5741 REMARK 3 S21: -1.1592 S22: 0.1374 S23: 4.8601 REMARK 3 S31: -1.4777 S32: 0.8380 S33: -1.2021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS BODIES HAVE BEEN ASSIGNED WITH TLSMD REMARK 4 REMARK 4 3C72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 5.20000 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 40.7000 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LTX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% (W/V) PEG 3350, 0.2 M CA-ACETATE, REMARK 280 0.1 M HEPES, COCRYSTALLIZATION WITH 5 MM INHIBITOR, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.09600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.71950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.83550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.71950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.09600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.83550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 GLY A 198 REMARK 465 PRO A 199 REMARK 465 GLN A 200 REMARK 465 GLY A 201 REMARK 465 ARG A 202 REMARK 465 SER A 240 REMARK 465 GLY A 241 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 LEU A 170 CG CD1 CD2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 LYS B 76 CD CE NZ REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 341 O HOH A 394 2.01 REMARK 500 OD1 ASN A 174 O HOH A 408 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 303 CB VAL A 303 CG2 -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 232 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 19 -73.13 -40.95 REMARK 500 GLU A 43 73.90 -100.12 REMARK 500 PHE A 175 -148.53 -97.39 REMARK 500 SER A 176 71.47 45.17 REMARK 500 ALA A 238 1.96 -69.19 REMARK 500 CYS A 243 74.43 -107.32 REMARK 500 ASP A 285 95.67 -166.44 REMARK 500 GLU A 328 -4.75 -57.95 REMARK 500 TYR A 329 177.20 -54.40 REMARK 500 SER B 12 -156.10 -96.01 REMARK 500 LEU B 19 57.67 -112.72 REMARK 500 GLU B 21 -72.75 -24.20 REMARK 500 SER B 110 28.01 -146.78 REMARK 500 ASP B 136 -175.16 -176.28 REMARK 500 ASP B 280 -66.10 -27.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 242 CYS A 243 44.16 REMARK 500 CYS A 243 GLU A 244 134.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 333 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 O REMARK 620 2 MET B 66 O 88.3 REMARK 620 3 HOH B 370 O 79.0 105.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CX1 B 334 DBREF 3C72 A 1 236 UNP Q08602 PGTA_RAT 1 236 DBREF 3C72 A 242 330 UNP Q08602 PGTA_RAT 353 441 DBREF 3C72 B 1 331 UNP Q08603 PGTB_RAT 1 331 SEQADV 3C72 GLY A -3 UNP Q08602 EXPRESSION TAG SEQADV 3C72 HIS A -2 UNP Q08602 EXPRESSION TAG SEQADV 3C72 GLY A -1 UNP Q08602 EXPRESSION TAG SEQADV 3C72 HIS A 0 UNP Q08602 EXPRESSION TAG SEQADV 3C72 GLY A 237 UNP Q08602 LINKER SEQADV 3C72 ALA A 238 UNP Q08602 LINKER SEQADV 3C72 GLY A 239 UNP Q08602 LINKER SEQADV 3C72 SER A 240 UNP Q08602 LINKER SEQADV 3C72 GLY A 241 UNP Q08602 LINKER SEQRES 1 A 334 GLY HIS GLY HIS MET HIS GLY ARG LEU LYS VAL LYS THR SEQRES 2 A 334 SER GLU GLU GLN ALA GLU ALA LYS ARG LEU GLU ARG GLU SEQRES 3 A 334 GLN LYS LEU LYS LEU TYR GLN SER ALA THR GLN ALA VAL SEQRES 4 A 334 PHE GLN LYS ARG GLN ALA GLY GLU LEU ASP GLU SER VAL SEQRES 5 A 334 LEU GLU LEU THR SER GLN ILE LEU GLY ALA ASN PRO ASP SEQRES 6 A 334 PHE ALA THR LEU TRP ASN CYS ARG ARG GLU VAL LEU GLN SEQRES 7 A 334 HIS LEU GLU THR GLU LYS SER PRO GLU GLU SER ALA ALA SEQRES 8 A 334 LEU VAL LYS ALA GLU LEU GLY PHE LEU GLU SER CYS LEU SEQRES 9 A 334 ARG VAL ASN PRO LYS SER TYR GLY THR TRP HIS HIS ARG SEQRES 10 A 334 CYS TRP LEU LEU SER ARG LEU PRO GLU PRO ASN TRP ALA SEQRES 11 A 334 ARG GLU LEU GLU LEU CYS ALA ARG PHE LEU GLU ALA ASP SEQRES 12 A 334 GLU ARG ASN PHE HIS CYS TRP ASP TYR ARG ARG PHE VAL SEQRES 13 A 334 ALA ALA GLN ALA ALA VAL ALA PRO ALA GLU GLU LEU ALA SEQRES 14 A 334 PHE THR ASP SER LEU ILE THR ARG ASN PHE SER ASN TYR SEQRES 15 A 334 SER SER TRP HIS TYR ARG SER CYS LEU LEU PRO GLN LEU SEQRES 16 A 334 HIS PRO GLN PRO ASP SER GLY PRO GLN GLY ARG LEU PRO SEQRES 17 A 334 GLU ASN VAL LEU LEU LYS GLU LEU GLU LEU VAL GLN ASN SEQRES 18 A 334 ALA PHE PHE THR ASP PRO ASN ASP GLN SER ALA TRP PHE SEQRES 19 A 334 TYR HIS ARG TRP LEU LEU GLY ALA GLY SER GLY ARG CYS SEQRES 20 A 334 GLU LEU SER VAL GLU LYS SER THR VAL LEU GLN SER GLU SEQRES 21 A 334 LEU GLU SER CYS LYS GLU LEU GLN GLU LEU GLU PRO GLU SEQRES 22 A 334 ASN LYS TRP CYS LEU LEU THR ILE ILE LEU LEU MET ARG SEQRES 23 A 334 ALA LEU ASP PRO LEU LEU TYR GLU LYS GLU THR LEU GLN SEQRES 24 A 334 TYR PHE SER THR LEU LYS ALA VAL ASP PRO MET ARG ALA SEQRES 25 A 334 ALA TYR LEU ASP ASP LEU ARG SER LYS PHE LEU LEU GLU SEQRES 26 A 334 ASN SER VAL LEU LYS MET GLU TYR ALA SEQRES 1 B 331 MET GLY THR GLN GLN LYS ASP VAL THR ILE LYS SER ASP SEQRES 2 B 331 ALA PRO ASP THR LEU LEU LEU GLU LYS HIS ALA ASP TYR SEQRES 3 B 331 ILE ALA SER TYR GLY SER LYS LYS ASP ASP TYR GLU TYR SEQRES 4 B 331 CYS MET SER GLU TYR LEU ARG MET SER GLY VAL TYR TRP SEQRES 5 B 331 GLY LEU THR VAL MET ASP LEU MET GLY GLN LEU HIS ARG SEQRES 6 B 331 MET ASN LYS GLU GLU ILE LEU VAL PHE ILE LYS SER CYS SEQRES 7 B 331 GLN HIS GLU CYS GLY GLY VAL SER ALA SER ILE GLY HIS SEQRES 8 B 331 ASP PRO HIS LEU LEU TYR THR LEU SER ALA VAL GLN ILE SEQRES 9 B 331 LEU THR LEU TYR ASP SER ILE HIS VAL ILE ASN VAL ASP SEQRES 10 B 331 LYS VAL VAL ALA TYR VAL GLN SER LEU GLN LYS GLU ASP SEQRES 11 B 331 GLY SER PHE ALA GLY ASP ILE TRP GLY GLU ILE ASP THR SEQRES 12 B 331 ARG PHE SER PHE CYS ALA VAL ALA THR LEU ALA LEU LEU SEQRES 13 B 331 GLY LYS LEU ASP ALA ILE ASN VAL GLU LYS ALA ILE GLU SEQRES 14 B 331 PHE VAL LEU SER CYS MET ASN PHE ASP GLY GLY PHE GLY SEQRES 15 B 331 CYS ARG PRO GLY SER GLU SER HIS ALA GLY GLN ILE TYR SEQRES 16 B 331 CYS CYS THR GLY PHE LEU ALA ILE THR SER GLN LEU HIS SEQRES 17 B 331 GLN VAL ASN SER ASP LEU LEU GLY TRP TRP LEU CYS GLU SEQRES 18 B 331 ARG GLN LEU PRO SER GLY GLY LEU ASN GLY ARG PRO GLU SEQRES 19 B 331 LYS LEU PRO ASP VAL CYS TYR SER TRP TRP VAL LEU ALA SEQRES 20 B 331 SER LEU LYS ILE ILE GLY ARG LEU HIS TRP ILE ASP ARG SEQRES 21 B 331 GLU LYS LEU ARG SER PHE ILE LEU ALA CYS GLN ASP GLU SEQRES 22 B 331 GLU THR GLY GLY PHE ALA ASP ARG PRO GLY ASP MET VAL SEQRES 23 B 331 ASP PRO PHE HIS THR LEU PHE GLY ILE ALA GLY LEU SER SEQRES 24 B 331 LEU LEU GLY GLU GLU GLN ILE LYS PRO VAL SER PRO VAL SEQRES 25 B 331 PHE CYS MET PRO GLU GLU VAL LEU GLN ARG VAL ASN VAL SEQRES 26 B 331 GLN PRO GLU LEU VAL SER HET ZN B 332 1 HET CA B 333 1 HET CX1 B 334 45 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CX1 N-[(BENZYLOXY)CARBONYL]-L-HISTIDYL-N-METHYL-L- HETNAM 2 CX1 PHENYLALANYL-L-TYROSINE FORMUL 3 ZN ZN 2+ FORMUL 4 CA CA 2+ FORMUL 5 CX1 C33 H35 N5 O7 FORMUL 6 HOH *191(H2 O) HELIX 1 1 ALA A 16 ALA A 41 1 26 HELIX 2 2 ASP A 45 ASN A 59 1 15 HELIX 3 3 PHE A 62 GLU A 77 1 16 HELIX 4 4 SER A 81 ASN A 103 1 23 HELIX 5 5 SER A 106 LEU A 120 1 15 HELIX 6 6 ASN A 124 ASP A 139 1 16 HELIX 7 7 ASN A 142 ALA A 156 1 15 HELIX 8 8 ALA A 159 ASN A 174 1 16 HELIX 9 9 ASN A 177 HIS A 192 1 16 HELIX 10 10 PRO A 204 PHE A 220 1 17 HELIX 11 11 ASP A 225 ALA A 238 1 14 HELIX 12 12 SER A 246 GLU A 267 1 22 HELIX 13 13 ASN A 270 ASP A 285 1 16 HELIX 14 14 TYR A 289 ASP A 304 1 16 HELIX 15 15 ARG A 307 GLU A 328 1 22 HELIX 16 16 LEU B 19 TYR B 30 1 12 HELIX 17 17 ASP B 36 SER B 42 1 7 HELIX 18 18 LEU B 45 MET B 60 1 16 HELIX 19 19 GLN B 62 MET B 66 5 5 HELIX 20 20 ASN B 67 GLN B 79 1 13 HELIX 21 21 HIS B 94 ASP B 109 1 16 HELIX 22 22 SER B 110 ILE B 114 5 5 HELIX 23 23 ASN B 115 LEU B 126 1 12 HELIX 24 24 ASP B 142 LEU B 156 1 15 HELIX 25 25 LYS B 158 ILE B 162 5 5 HELIX 26 26 ASN B 163 CYS B 174 1 12 HELIX 27 27 HIS B 190 THR B 204 1 15 HELIX 28 28 GLN B 206 VAL B 210 5 5 HELIX 29 29 ASN B 211 GLU B 221 1 11 HELIX 30 30 ASP B 238 ILE B 252 1 15 HELIX 31 31 ARG B 254 ILE B 258 5 5 HELIX 32 32 ASP B 259 CYS B 270 1 12 HELIX 33 33 PRO B 288 LEU B 301 1 14 HELIX 34 34 PRO B 316 VAL B 323 1 8 SHEET 1 A 2 PHE B 278 ALA B 279 0 SHEET 2 A 2 VAL B 286 ASP B 287 -1 O ASP B 287 N PHE B 278 LINK O HIS B 64 CA CA B 333 1555 1555 2.56 LINK O MET B 66 CA CA B 333 1555 1555 2.26 LINK NE2 HIS B 290 ZN ZN B 332 1555 1555 2.37 LINK CA CA B 333 O HOH B 370 1555 1555 2.52 SITE 1 AC1 4 ASP B 238 CYS B 240 ASP B 280 HIS B 290 SITE 1 AC2 4 ALA A 138 HIS B 64 MET B 66 HOH B 370 SITE 1 AC3 13 TYR A 107 LEU B 96 TYR B 97 ARG B 144 SITE 2 AC3 13 PHE B 147 HIS B 190 GLY B 192 GLN B 193 SITE 3 AC3 13 TYR B 195 CYS B 196 TYR B 241 TRP B 244 SITE 4 AC3 13 HOH B 359 CRYST1 66.192 91.671 115.439 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008663 0.00000