data_3C9J # _entry.id 3C9J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3C9J pdb_00003c9j 10.2210/pdb3c9j/pdb RCSB RCSB046511 ? ? WWPDB D_1000046511 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' struct_ncs_dom_lim 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 8 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' # _pdbx_database_status.entry_id 3C9J _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stouffer, A.L.' 1 'Acharya, R.' 2 'Salom, D.' 3 # _citation.id primary _citation.title 'Structural basis for the function and inhibition of an influenza virus proton channel' _citation.journal_abbrev Nature _citation.journal_volume 451 _citation.page_first 596 _citation.page_last 600 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18235504 _citation.pdbx_database_id_DOI 10.1038/nature06528 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stouffer, A.L.' 1 ? primary 'Acharya, R.' 2 ? primary 'Salom, D.' 3 ? primary 'Levine, A.S.' 4 ? primary 'Costanzo, L.D.' 5 ? primary 'Soto, C.S.' 6 ? primary 'Tereshko, V.' 7 ? primary 'Nanda, V.' 8 ? primary 'Stayrook, S.' 9 ? primary 'DeGrado, W.F.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Proton Channel protein M2, transmembrane segment' 2744.321 4 ? G34A 'residues 22-46' 'complexed with Amantadine, residue 308' 2 non-polymer syn '(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine' 151.249 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Matrix protein 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SSDPLVVAASIIAILHLILWILDRL _entity_poly.pdbx_seq_one_letter_code_can SSDPLVVAASIIAILHLILWILDRL _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine' _pdbx_entity_nonpoly.comp_id 308 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 ASP n 1 4 PRO n 1 5 LEU n 1 6 VAL n 1 7 VAL n 1 8 ALA n 1 9 ALA n 1 10 SER n 1 11 ILE n 1 12 ILE n 1 13 ALA n 1 14 ILE n 1 15 LEU n 1 16 HIS n 1 17 LEU n 1 18 ILE n 1 19 LEU n 1 20 TRP n 1 21 ILE n 1 22 LEU n 1 23 ASP n 1 24 ARG n 1 25 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'occurs bnaturally in Influenza A virus' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 308 non-polymer . '(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine' Amantadine 'C10 H17 N' 151.249 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LEU 25 25 25 LEU LEU A . n B 1 1 SER 1 1 1 SER SER B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 ASP 3 3 3 ASP ASP B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 HIS 16 16 16 HIS HIS B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 TRP 20 20 20 TRP TRP B . n B 1 21 ILE 21 21 21 ILE ILE B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 LEU 25 25 25 LEU LEU B . n C 1 1 SER 1 1 1 SER SER C . n C 1 2 SER 2 2 2 SER SER C . n C 1 3 ASP 3 3 3 ASP ASP C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 VAL 6 6 6 VAL VAL C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 ALA 8 8 8 ALA ALA C . n C 1 9 ALA 9 9 9 ALA ALA C . n C 1 10 SER 10 10 10 SER SER C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 ILE 12 12 12 ILE ILE C . n C 1 13 ALA 13 13 13 ALA ALA C . n C 1 14 ILE 14 14 14 ILE ILE C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 HIS 16 16 16 HIS HIS C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 ILE 18 18 18 ILE ILE C . n C 1 19 LEU 19 19 19 LEU LEU C . n C 1 20 TRP 20 20 20 TRP TRP C . n C 1 21 ILE 21 21 21 ILE ILE C . n C 1 22 LEU 22 22 22 LEU LEU C . n C 1 23 ASP 23 23 23 ASP ASP C . n C 1 24 ARG 24 24 24 ARG ARG C . n C 1 25 LEU 25 25 25 LEU LEU C . n D 1 1 SER 1 1 1 SER SER D . n D 1 2 SER 2 2 2 SER SER D . n D 1 3 ASP 3 3 3 ASP ASP D . n D 1 4 PRO 4 4 4 PRO PRO D . n D 1 5 LEU 5 5 5 LEU LEU D . n D 1 6 VAL 6 6 6 VAL VAL D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 ALA 8 8 8 ALA ALA D . n D 1 9 ALA 9 9 9 ALA ALA D . n D 1 10 SER 10 10 10 SER SER D . n D 1 11 ILE 11 11 11 ILE ILE D . n D 1 12 ILE 12 12 12 ILE ILE D . n D 1 13 ALA 13 13 13 ALA ALA D . n D 1 14 ILE 14 14 14 ILE ILE D . n D 1 15 LEU 15 15 15 LEU LEU D . n D 1 16 HIS 16 16 16 HIS HIS D . n D 1 17 LEU 17 17 17 LEU LEU D . n D 1 18 ILE 18 18 18 ILE ILE D . n D 1 19 LEU 19 19 19 LEU LEU D . n D 1 20 TRP 20 20 20 TRP TRP D . n D 1 21 ILE 21 21 21 ILE ILE D . n D 1 22 LEU 22 22 22 LEU LEU D . n D 1 23 ASP 23 23 23 ASP ASP D . n D 1 24 ARG 24 24 24 ARG ARG D . n D 1 25 LEU 25 25 25 LEU LEU D . n # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 308 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id 308 _pdbx_nonpoly_scheme.auth_mon_id 308 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3C9J _cell.length_a 60.397 _cell.length_b 57.833 _cell.length_c 38.105 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3C9J _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 3C9J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.03 _exptl_crystal.density_percent_sol 59.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.pdbx_details ;Sample solution: 0.8mM protein, 0.6mM Amantadine, 32mM n-octyl-beta-D-glucopyranoside and 5% w/v Xylitol. Reservoir solution:50mM Tris-Hcl, 500mM MgCl2, 30mM NiCl2, 22% PEG 350 MME, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2004-12-08 _diffrn_detector.details 'Osmic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3C9J _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 3.50 _reflns.d_resolution_low 15.0 _reflns.number_all 1999 _reflns.number_obs 1848 _reflns.percent_possible_obs 92.4 _reflns.pdbx_Rmerge_I_obs 0.105 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.B_iso_Wilson_estimate 63.1 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.50 _reflns_shell.d_res_low 3.61 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.362 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 163 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3C9J _refine.ls_number_reflns_obs 1530 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 3.50 _refine.ls_percent_reflns_obs 91.27 _refine.ls_R_factor_obs 0.29322 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.29054 _refine.ls_R_factor_R_free 0.31668 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.1 _refine.ls_number_reflns_R_free 154 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.865 _refine.correlation_coeff_Fo_to_Fc_free 0.851 _refine.B_iso_mean 35.151 _refine.aniso_B[1][1] 0.46 _refine.aniso_B[2][2] -2.02 _refine.aniso_B[3][3] 1.56 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Polyala, single alpha helix of length 23 residues' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.844 _refine.overall_SU_ML 0.687 _refine.overall_SU_B 95.716 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 772 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 783 _refine_hist.d_res_high 3.50 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.029 0.022 ? 797 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.165 2.015 ? 1097 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.541 5.000 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.455 22.000 ? 20 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.118 15.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.353 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.110 0.200 ? 156 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 516 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.334 0.200 ? 397 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.362 0.200 ? 589 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.160 0.200 ? 29 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.355 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.243 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.396 1.500 ? 510 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.432 2.000 ? 816 'X-RAY DIFFRACTION' ? r_scbond_it 0.651 3.000 ? 325 'X-RAY DIFFRACTION' ? r_scangle_it 1.165 4.500 ? 281 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 174 0.40 0.05 'tight positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 A 174 0.35 0.05 'tight positional' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? 1 A 174 0.45 0.05 'tight positional' 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? 1 A 174 0.15 0.50 'tight thermal' 1 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? 1 A 174 0.14 0.50 'tight thermal' 2 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? 1 A 174 0.17 0.50 'tight thermal' 3 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.500 _refine_ls_shell.d_res_low 3.586 _refine_ls_shell.number_reflns_R_work 74 _refine_ls_shell.R_factor_R_work 0.303 _refine_ls_shell.percent_reflns_obs 64.84 _refine_ls_shell.R_factor_R_free 0.279 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 C 3 1 A 3 2 D # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A SER 1 . A ASP 23 . A SER 1 A ASP 23 1 ? 1 2 1 B SER 1 . B ASP 23 . B SER 1 B ASP 23 1 ? 2 1 1 A SER 1 . A ASP 23 . A SER 1 A ASP 23 1 ? 2 2 1 C SER 1 . C ASP 23 . C SER 1 C ASP 23 1 ? 3 1 1 A SER 1 . A ASP 23 . A SER 1 A ASP 23 1 ? 3 2 1 D SER 1 . D ASP 23 . D SER 1 D ASP 23 1 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 3C9J _struct.title 'The Crystal structure of Transmembrane domain of M2 protein and Amantadine complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C9J _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'Proton Channel, Ion Channel, M2TM, M2-Amantadine Complex, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code M2_I97A1 _struct_ref.pdbx_db_accession O70632 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_seq_one_letter_code SSDPLVVAASIIGILHLILWILDRL _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3C9J A 1 ? 25 ? O70632 22 ? 46 ? 1 25 2 1 3C9J B 1 ? 25 ? O70632 22 ? 46 ? 1 25 3 1 3C9J C 1 ? 25 ? O70632 22 ? 46 ? 1 25 4 1 3C9J D 1 ? 25 ? O70632 22 ? 46 ? 1 25 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3C9J ALA A 13 ? UNP O70632 GLY 34 'engineered mutation' 13 1 2 3C9J ALA B 13 ? UNP O70632 GLY 34 'engineered mutation' 13 2 3 3C9J ALA C 13 ? UNP O70632 GLY 34 'engineered mutation' 13 3 4 3C9J ALA D 13 ? UNP O70632 GLY 34 'engineered mutation' 13 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 3050 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? LEU A 19 ? ASP A 3 LEU A 19 1 ? 17 HELX_P HELX_P2 2 ASP B 3 ? ARG B 24 ? ASP B 3 ARG B 24 1 ? 22 HELX_P HELX_P3 3 PRO C 4 ? ARG C 24 ? PRO C 4 ARG C 24 1 ? 21 HELX_P HELX_P4 4 ASP D 3 ? SER D 10 ? ASP D 3 SER D 10 1 ? 8 HELX_P HELX_P5 5 SER D 10 ? LEU D 15 ? SER D 10 LEU D 15 1 ? 6 HELX_P HELX_P6 6 LEU D 15 ? LEU D 22 ? LEU D 15 LEU D 22 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id 308 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE 308 B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ALA B 9 ? ALA B 9 . ? 1_555 ? 2 AC1 4 SER B 10 ? SER B 10 . ? 1_555 ? 3 AC1 4 SER C 10 ? SER C 10 . ? 1_555 ? 4 AC1 4 SER D 10 ? SER D 10 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CZ D ARG 24 ? ? NH1 D ARG 24 ? ? 1.418 1.326 0.092 0.013 N 2 1 C D LEU 25 ? ? O D LEU 25 ? ? 1.417 1.229 0.188 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B ASP 23 ? ? CG B ASP 23 ? ? OD1 B ASP 23 ? ? 123.74 118.30 5.44 0.90 N 2 1 CB C ASP 3 ? ? CG C ASP 3 ? ? OD2 C ASP 3 ? ? 124.23 118.30 5.93 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? -48.30 159.93 2 1 ILE A 21 ? ? -58.16 -0.25 3 1 ARG A 24 ? ? -156.52 45.31 4 1 ASP D 23 ? ? -137.69 -68.50 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -14.2696 _pdbx_refine_tls.origin_y 14.8826 _pdbx_refine_tls.origin_z -0.5157 _pdbx_refine_tls.T[1][1] 0.2588 _pdbx_refine_tls.T[2][2] 0.2360 _pdbx_refine_tls.T[3][3] 0.1137 _pdbx_refine_tls.T[1][2] 0.0273 _pdbx_refine_tls.T[1][3] 0.0044 _pdbx_refine_tls.T[2][3] 0.0055 _pdbx_refine_tls.L[1][1] 5.2007 _pdbx_refine_tls.L[2][2] 6.4697 _pdbx_refine_tls.L[3][3] 0.1547 _pdbx_refine_tls.L[1][2] 0.3516 _pdbx_refine_tls.L[1][3] -0.8314 _pdbx_refine_tls.L[2][3] -0.4312 _pdbx_refine_tls.S[1][1] -0.1308 _pdbx_refine_tls.S[1][2] -0.4044 _pdbx_refine_tls.S[1][3] 0.2209 _pdbx_refine_tls.S[2][1] 0.0673 _pdbx_refine_tls.S[2][2] 0.1975 _pdbx_refine_tls.S[2][3] 0.1282 _pdbx_refine_tls.S[3][1] -0.3913 _pdbx_refine_tls.S[3][2] 0.3921 _pdbx_refine_tls.S[3][3] -0.0667 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 25 A 25 ? 'X-RAY DIFFRACTION' ? 2 1 B 1 B 1 B 25 B 25 ? 'X-RAY DIFFRACTION' ? 3 1 C 1 C 1 C 25 C 25 ? 'X-RAY DIFFRACTION' ? 4 1 D 1 D 1 D 25 D 25 ? 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 308 N1 N N N 1 308 C10 C N N 2 308 C7 C N N 3 308 C1 C N N 4 308 C8 C N N 5 308 C5 C N N 6 308 C6 C N N 7 308 C4 C N N 8 308 C9 C N N 9 308 C3 C N N 10 308 C2 C N N 11 308 HN1 H N N 12 308 HN1A H N N 13 308 H7 H N N 14 308 H7A H N N 15 308 H1 H N N 16 308 H8 H N N 17 308 H8A H N N 18 308 H5 H N N 19 308 H6 H N N 20 308 H6A H N N 21 308 H4 H N N 22 308 H4A H N N 23 308 H9 H N N 24 308 H9A H N N 25 308 H3 H N N 26 308 H2 H N N 27 308 H2A H N N 28 ALA N N N N 29 ALA CA C N S 30 ALA C C N N 31 ALA O O N N 32 ALA CB C N N 33 ALA OXT O N N 34 ALA H H N N 35 ALA H2 H N N 36 ALA HA H N N 37 ALA HB1 H N N 38 ALA HB2 H N N 39 ALA HB3 H N N 40 ALA HXT H N N 41 ARG N N N N 42 ARG CA C N S 43 ARG C C N N 44 ARG O O N N 45 ARG CB C N N 46 ARG CG C N N 47 ARG CD C N N 48 ARG NE N N N 49 ARG CZ C N N 50 ARG NH1 N N N 51 ARG NH2 N N N 52 ARG OXT O N N 53 ARG H H N N 54 ARG H2 H N N 55 ARG HA H N N 56 ARG HB2 H N N 57 ARG HB3 H N N 58 ARG HG2 H N N 59 ARG HG3 H N N 60 ARG HD2 H N N 61 ARG HD3 H N N 62 ARG HE H N N 63 ARG HH11 H N N 64 ARG HH12 H N N 65 ARG HH21 H N N 66 ARG HH22 H N N 67 ARG HXT H N N 68 ASP N N N N 69 ASP CA C N S 70 ASP C C N N 71 ASP O O N N 72 ASP CB C N N 73 ASP CG C N N 74 ASP OD1 O N N 75 ASP OD2 O N N 76 ASP OXT O N N 77 ASP H H N N 78 ASP H2 H N N 79 ASP HA H N N 80 ASP HB2 H N N 81 ASP HB3 H N N 82 ASP HD2 H N N 83 ASP HXT H N N 84 GLY N N N N 85 GLY CA C N N 86 GLY C C N N 87 GLY O O N N 88 GLY OXT O N N 89 GLY H H N N 90 GLY H2 H N N 91 GLY HA2 H N N 92 GLY HA3 H N N 93 GLY HXT H N N 94 HIS N N N N 95 HIS CA C N S 96 HIS C C N N 97 HIS O O N N 98 HIS CB C N N 99 HIS CG C Y N 100 HIS ND1 N Y N 101 HIS CD2 C Y N 102 HIS CE1 C Y N 103 HIS NE2 N Y N 104 HIS OXT O N N 105 HIS H H N N 106 HIS H2 H N N 107 HIS HA H N N 108 HIS HB2 H N N 109 HIS HB3 H N N 110 HIS HD1 H N N 111 HIS HD2 H N N 112 HIS HE1 H N N 113 HIS HE2 H N N 114 HIS HXT H N N 115 ILE N N N N 116 ILE CA C N S 117 ILE C C N N 118 ILE O O N N 119 ILE CB C N S 120 ILE CG1 C N N 121 ILE CG2 C N N 122 ILE CD1 C N N 123 ILE OXT O N N 124 ILE H H N N 125 ILE H2 H N N 126 ILE HA H N N 127 ILE HB H N N 128 ILE HG12 H N N 129 ILE HG13 H N N 130 ILE HG21 H N N 131 ILE HG22 H N N 132 ILE HG23 H N N 133 ILE HD11 H N N 134 ILE HD12 H N N 135 ILE HD13 H N N 136 ILE HXT H N N 137 LEU N N N N 138 LEU CA C N S 139 LEU C C N N 140 LEU O O N N 141 LEU CB C N N 142 LEU CG C N N 143 LEU CD1 C N N 144 LEU CD2 C N N 145 LEU OXT O N N 146 LEU H H N N 147 LEU H2 H N N 148 LEU HA H N N 149 LEU HB2 H N N 150 LEU HB3 H N N 151 LEU HG H N N 152 LEU HD11 H N N 153 LEU HD12 H N N 154 LEU HD13 H N N 155 LEU HD21 H N N 156 LEU HD22 H N N 157 LEU HD23 H N N 158 LEU HXT H N N 159 PRO N N N N 160 PRO CA C N S 161 PRO C C N N 162 PRO O O N N 163 PRO CB C N N 164 PRO CG C N N 165 PRO CD C N N 166 PRO OXT O N N 167 PRO H H N N 168 PRO HA H N N 169 PRO HB2 H N N 170 PRO HB3 H N N 171 PRO HG2 H N N 172 PRO HG3 H N N 173 PRO HD2 H N N 174 PRO HD3 H N N 175 PRO HXT H N N 176 SER N N N N 177 SER CA C N S 178 SER C C N N 179 SER O O N N 180 SER CB C N N 181 SER OG O N N 182 SER OXT O N N 183 SER H H N N 184 SER H2 H N N 185 SER HA H N N 186 SER HB2 H N N 187 SER HB3 H N N 188 SER HG H N N 189 SER HXT H N N 190 TRP N N N N 191 TRP CA C N S 192 TRP C C N N 193 TRP O O N N 194 TRP CB C N N 195 TRP CG C Y N 196 TRP CD1 C Y N 197 TRP CD2 C Y N 198 TRP NE1 N Y N 199 TRP CE2 C Y N 200 TRP CE3 C Y N 201 TRP CZ2 C Y N 202 TRP CZ3 C Y N 203 TRP CH2 C Y N 204 TRP OXT O N N 205 TRP H H N N 206 TRP H2 H N N 207 TRP HA H N N 208 TRP HB2 H N N 209 TRP HB3 H N N 210 TRP HD1 H N N 211 TRP HE1 H N N 212 TRP HE3 H N N 213 TRP HZ2 H N N 214 TRP HZ3 H N N 215 TRP HH2 H N N 216 TRP HXT H N N 217 VAL N N N N 218 VAL CA C N S 219 VAL C C N N 220 VAL O O N N 221 VAL CB C N N 222 VAL CG1 C N N 223 VAL CG2 C N N 224 VAL OXT O N N 225 VAL H H N N 226 VAL H2 H N N 227 VAL HA H N N 228 VAL HB H N N 229 VAL HG11 H N N 230 VAL HG12 H N N 231 VAL HG13 H N N 232 VAL HG21 H N N 233 VAL HG22 H N N 234 VAL HG23 H N N 235 VAL HXT H N N 236 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 308 N1 C10 sing N N 1 308 C10 C7 sing N N 2 308 C10 C8 sing N N 3 308 C10 C9 sing N N 4 308 C7 C1 sing N N 5 308 C1 C6 sing N N 6 308 C1 C2 sing N N 7 308 C8 C5 sing N N 8 308 C5 C6 sing N N 9 308 C5 C4 sing N N 10 308 C4 C3 sing N N 11 308 C9 C3 sing N N 12 308 C3 C2 sing N N 13 308 N1 HN1 sing N N 14 308 N1 HN1A sing N N 15 308 C7 H7 sing N N 16 308 C7 H7A sing N N 17 308 C1 H1 sing N N 18 308 C8 H8 sing N N 19 308 C8 H8A sing N N 20 308 C5 H5 sing N N 21 308 C6 H6 sing N N 22 308 C6 H6A sing N N 23 308 C4 H4 sing N N 24 308 C4 H4A sing N N 25 308 C9 H9 sing N N 26 308 C9 H9A sing N N 27 308 C3 H3 sing N N 28 308 C2 H2 sing N N 29 308 C2 H2A sing N N 30 ALA N CA sing N N 31 ALA N H sing N N 32 ALA N H2 sing N N 33 ALA CA C sing N N 34 ALA CA CB sing N N 35 ALA CA HA sing N N 36 ALA C O doub N N 37 ALA C OXT sing N N 38 ALA CB HB1 sing N N 39 ALA CB HB2 sing N N 40 ALA CB HB3 sing N N 41 ALA OXT HXT sing N N 42 ARG N CA sing N N 43 ARG N H sing N N 44 ARG N H2 sing N N 45 ARG CA C sing N N 46 ARG CA CB sing N N 47 ARG CA HA sing N N 48 ARG C O doub N N 49 ARG C OXT sing N N 50 ARG CB CG sing N N 51 ARG CB HB2 sing N N 52 ARG CB HB3 sing N N 53 ARG CG CD sing N N 54 ARG CG HG2 sing N N 55 ARG CG HG3 sing N N 56 ARG CD NE sing N N 57 ARG CD HD2 sing N N 58 ARG CD HD3 sing N N 59 ARG NE CZ sing N N 60 ARG NE HE sing N N 61 ARG CZ NH1 sing N N 62 ARG CZ NH2 doub N N 63 ARG NH1 HH11 sing N N 64 ARG NH1 HH12 sing N N 65 ARG NH2 HH21 sing N N 66 ARG NH2 HH22 sing N N 67 ARG OXT HXT sing N N 68 ASP N CA sing N N 69 ASP N H sing N N 70 ASP N H2 sing N N 71 ASP CA C sing N N 72 ASP CA CB sing N N 73 ASP CA HA sing N N 74 ASP C O doub N N 75 ASP C OXT sing N N 76 ASP CB CG sing N N 77 ASP CB HB2 sing N N 78 ASP CB HB3 sing N N 79 ASP CG OD1 doub N N 80 ASP CG OD2 sing N N 81 ASP OD2 HD2 sing N N 82 ASP OXT HXT sing N N 83 GLY N CA sing N N 84 GLY N H sing N N 85 GLY N H2 sing N N 86 GLY CA C sing N N 87 GLY CA HA2 sing N N 88 GLY CA HA3 sing N N 89 GLY C O doub N N 90 GLY C OXT sing N N 91 GLY OXT HXT sing N N 92 HIS N CA sing N N 93 HIS N H sing N N 94 HIS N H2 sing N N 95 HIS CA C sing N N 96 HIS CA CB sing N N 97 HIS CA HA sing N N 98 HIS C O doub N N 99 HIS C OXT sing N N 100 HIS CB CG sing N N 101 HIS CB HB2 sing N N 102 HIS CB HB3 sing N N 103 HIS CG ND1 sing Y N 104 HIS CG CD2 doub Y N 105 HIS ND1 CE1 doub Y N 106 HIS ND1 HD1 sing N N 107 HIS CD2 NE2 sing Y N 108 HIS CD2 HD2 sing N N 109 HIS CE1 NE2 sing Y N 110 HIS CE1 HE1 sing N N 111 HIS NE2 HE2 sing N N 112 HIS OXT HXT sing N N 113 ILE N CA sing N N 114 ILE N H sing N N 115 ILE N H2 sing N N 116 ILE CA C sing N N 117 ILE CA CB sing N N 118 ILE CA HA sing N N 119 ILE C O doub N N 120 ILE C OXT sing N N 121 ILE CB CG1 sing N N 122 ILE CB CG2 sing N N 123 ILE CB HB sing N N 124 ILE CG1 CD1 sing N N 125 ILE CG1 HG12 sing N N 126 ILE CG1 HG13 sing N N 127 ILE CG2 HG21 sing N N 128 ILE CG2 HG22 sing N N 129 ILE CG2 HG23 sing N N 130 ILE CD1 HD11 sing N N 131 ILE CD1 HD12 sing N N 132 ILE CD1 HD13 sing N N 133 ILE OXT HXT sing N N 134 LEU N CA sing N N 135 LEU N H sing N N 136 LEU N H2 sing N N 137 LEU CA C sing N N 138 LEU CA CB sing N N 139 LEU CA HA sing N N 140 LEU C O doub N N 141 LEU C OXT sing N N 142 LEU CB CG sing N N 143 LEU CB HB2 sing N N 144 LEU CB HB3 sing N N 145 LEU CG CD1 sing N N 146 LEU CG CD2 sing N N 147 LEU CG HG sing N N 148 LEU CD1 HD11 sing N N 149 LEU CD1 HD12 sing N N 150 LEU CD1 HD13 sing N N 151 LEU CD2 HD21 sing N N 152 LEU CD2 HD22 sing N N 153 LEU CD2 HD23 sing N N 154 LEU OXT HXT sing N N 155 PRO N CA sing N N 156 PRO N CD sing N N 157 PRO N H sing N N 158 PRO CA C sing N N 159 PRO CA CB sing N N 160 PRO CA HA sing N N 161 PRO C O doub N N 162 PRO C OXT sing N N 163 PRO CB CG sing N N 164 PRO CB HB2 sing N N 165 PRO CB HB3 sing N N 166 PRO CG CD sing N N 167 PRO CG HG2 sing N N 168 PRO CG HG3 sing N N 169 PRO CD HD2 sing N N 170 PRO CD HD3 sing N N 171 PRO OXT HXT sing N N 172 SER N CA sing N N 173 SER N H sing N N 174 SER N H2 sing N N 175 SER CA C sing N N 176 SER CA CB sing N N 177 SER CA HA sing N N 178 SER C O doub N N 179 SER C OXT sing N N 180 SER CB OG sing N N 181 SER CB HB2 sing N N 182 SER CB HB3 sing N N 183 SER OG HG sing N N 184 SER OXT HXT sing N N 185 TRP N CA sing N N 186 TRP N H sing N N 187 TRP N H2 sing N N 188 TRP CA C sing N N 189 TRP CA CB sing N N 190 TRP CA HA sing N N 191 TRP C O doub N N 192 TRP C OXT sing N N 193 TRP CB CG sing N N 194 TRP CB HB2 sing N N 195 TRP CB HB3 sing N N 196 TRP CG CD1 doub Y N 197 TRP CG CD2 sing Y N 198 TRP CD1 NE1 sing Y N 199 TRP CD1 HD1 sing N N 200 TRP CD2 CE2 doub Y N 201 TRP CD2 CE3 sing Y N 202 TRP NE1 CE2 sing Y N 203 TRP NE1 HE1 sing N N 204 TRP CE2 CZ2 sing Y N 205 TRP CE3 CZ3 doub Y N 206 TRP CE3 HE3 sing N N 207 TRP CZ2 CH2 doub Y N 208 TRP CZ2 HZ2 sing N N 209 TRP CZ3 CH2 sing Y N 210 TRP CZ3 HZ3 sing N N 211 TRP CH2 HH2 sing N N 212 TRP OXT HXT sing N N 213 VAL N CA sing N N 214 VAL N H sing N N 215 VAL N H2 sing N N 216 VAL CA C sing N N 217 VAL CA CB sing N N 218 VAL CA HA sing N N 219 VAL C O doub N N 220 VAL C OXT sing N N 221 VAL CB CG1 sing N N 222 VAL CB CG2 sing N N 223 VAL CB HB sing N N 224 VAL CG1 HG11 sing N N 225 VAL CG1 HG12 sing N N 226 VAL CG1 HG13 sing N N 227 VAL CG2 HG21 sing N N 228 VAL CG2 HG22 sing N N 229 VAL CG2 HG23 sing N N 230 VAL OXT HXT sing N N 231 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Polyala, single alpha helix of length 23 residues' # _atom_sites.entry_id 3C9J _atom_sites.fract_transf_matrix[1][1] 0.016557 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026243 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_