HEADER TRANSCRIPTION 21-FEB-08 3CB5 TITLE CRYSTAL STRUCTURE OF THE S. POMBE PEPTIDASE HOMOLOGY DOMAIN OF FACT TITLE 2 COMPLEX SUBUNIT SPT16 (FORM A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FACT COMPLEX SUBUNIT SPT16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT, UNP RESIDUES 1-442; COMPND 5 SYNONYM: FACILITATES CHROMATIN TRANSCRIPTION COMPLEX SUBUNIT SPT16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: SPT16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS PEPTIDASE HOMOLOGY DOMAIN, HISTONE BINDING MODULE, HISTONE H3/H4 KEYWDS 2 CHAPERONE, PITA-BREAD FOLD, CHROMOSOMAL PROTEIN, DNA DAMAGE, DNA KEYWDS 3 REPAIR, DNA REPLICATION, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR T.STUWE,M.HOTHORN,E.LEJEUNE,M.BORTFELD-MILLER,K.SCHEFFZEK, AUTHOR 2 A.G.LADURNER REVDAT 5 16-OCT-24 3CB5 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3CB5 1 VERSN REVDAT 3 24-FEB-09 3CB5 1 VERSN REVDAT 2 25-NOV-08 3CB5 1 JRNL REVDAT 1 17-JUN-08 3CB5 0 JRNL AUTH T.STUWE,M.HOTHORN,E.LEJEUNE,V.RYBIN,M.BORTFELD,K.SCHEFFZEK, JRNL AUTH 2 A.G.LADURNER JRNL TITL THE FACT SPT16 "PEPTIDASE" DOMAIN IS A HISTONE H3-H4 BINDING JRNL TITL 2 MODULE JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 8884 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18579787 JRNL DOI 10.1073/PNAS.0712293105 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7169 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4900 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9688 ; 1.419 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12018 ; 1.399 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 889 ; 6.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 325 ;36.286 ;25.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1311 ;15.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;21.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1095 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7903 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1400 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4403 ; 0.503 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1798 ; 0.127 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7112 ; 0.926 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2766 ; 1.847 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2572 ; 2.576 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0906 7.1432 45.7558 REMARK 3 T TENSOR REMARK 3 T11: -0.1363 T22: -0.1254 REMARK 3 T33: -0.1140 T12: 0.0257 REMARK 3 T13: -0.0619 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.3407 L22: 3.1086 REMARK 3 L33: 2.4195 L12: -0.7992 REMARK 3 L13: 0.7481 L23: 0.1982 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: 0.1166 S13: -0.3014 REMARK 3 S21: -0.0299 S22: 0.0463 S23: -0.1733 REMARK 3 S31: 0.3969 S32: 0.1855 S33: -0.1734 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 442 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6178 24.6726 28.3814 REMARK 3 T TENSOR REMARK 3 T11: -0.1105 T22: -0.1988 REMARK 3 T33: -0.1571 T12: 0.0201 REMARK 3 T13: -0.0362 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.8288 L22: 1.6309 REMARK 3 L33: 1.7518 L12: -0.3486 REMARK 3 L13: 0.2421 L23: 0.1281 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.3431 S13: 0.0158 REMARK 3 S21: -0.3984 S22: -0.0895 S23: 0.1254 REMARK 3 S31: -0.0539 S32: -0.0734 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 70.7430 17.2777 17.6811 REMARK 3 T TENSOR REMARK 3 T11: -0.0518 T22: 0.0499 REMARK 3 T33: 0.0336 T12: -0.0339 REMARK 3 T13: 0.0355 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.7592 L22: 2.7063 REMARK 3 L33: 2.2496 L12: 0.6317 REMARK 3 L13: -0.4099 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.5712 S13: 0.0290 REMARK 3 S21: 0.2466 S22: -0.0770 S23: -0.2256 REMARK 3 S31: -0.0823 S32: 0.1446 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 168 B 442 REMARK 3 ORIGIN FOR THE GROUP (A): 49.2209 0.5641 -4.7651 REMARK 3 T TENSOR REMARK 3 T11: -0.0781 T22: -0.2377 REMARK 3 T33: -0.0388 T12: 0.0239 REMARK 3 T13: 0.0846 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 3.3028 L22: 1.7859 REMARK 3 L33: 1.6783 L12: 0.5408 REMARK 3 L13: 1.0623 L23: 0.2441 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0044 S13: -0.1746 REMARK 3 S21: -0.2434 S22: -0.0244 S23: 0.0100 REMARK 3 S31: 0.0627 S32: -0.0694 S33: 0.0431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-07; 26-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; SLS REMARK 200 BEAMLINE : BM16; X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931; 0.980, 0.976, 0.907 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; MARMOSAIC 225 REMARK 200 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 72.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.650 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 2000, 0.1M BIS-TRIS PROPANE, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.53500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.53500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 LYS B 400 REMARK 465 ASN B 401 REMARK 465 SER B 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 SER A 402 OG REMARK 470 GLN A 403 CG CD OE1 NE2 REMARK 470 PRO B 399 CG CD REMARK 470 GLN B 403 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 109 -158.26 -101.63 REMARK 500 THR A 129 -164.11 -106.24 REMARK 500 ASP A 277 -89.08 -127.15 REMARK 500 SER A 289 0.78 90.23 REMARK 500 THR A 418 -169.47 -122.03 REMARK 500 SER A 420 -138.20 -142.58 REMARK 500 GLU A 441 -3.41 91.38 REMARK 500 THR B 82 -164.85 -166.37 REMARK 500 GLU B 95 -89.44 -94.82 REMARK 500 THR B 96 -131.40 47.17 REMARK 500 LYS B 97 94.10 172.23 REMARK 500 LYS B 197 -70.81 -100.95 REMARK 500 ASP B 277 -83.07 -123.15 REMARK 500 SER B 289 5.27 92.16 REMARK 500 HIS B 398 -144.36 74.81 REMARK 500 THR B 418 -163.55 -128.04 REMARK 500 SER B 420 -125.24 -133.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BIQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE CORRESPONDING FRAGMENT IN S. CEREVISIAE SPT16 REMARK 900 RELATED ID: 3BIP RELATED DB: PDB REMARK 900 STRUCTURE OF THE CORRESPONDING FRAGMENT IN S. CEREVISIAE SPT16 REMARK 900 RELATED ID: 3BIT RELATED DB: PDB REMARK 900 STRUCTURE OF THE CORRESPONDING FRAGMENT IN S. CEREVISIAE SPT16 REMARK 900 RELATED ID: 3CB6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE S. POMBE PEPTIDASE HOMOLOGY DOMAIN OF FACT REMARK 900 COMPLEX SUBUNIT SPT16 (FORM B) DBREF 3CB5 A 1 442 UNP O94267 SPT16_SCHPO 1 442 DBREF 3CB5 B 1 442 UNP O94267 SPT16_SCHPO 1 442 SEQADV 3CB5 GLY A -1 UNP O94267 EXPRESSION TAG SEQADV 3CB5 ALA A 0 UNP O94267 EXPRESSION TAG SEQADV 3CB5 GLY B -1 UNP O94267 EXPRESSION TAG SEQADV 3CB5 ALA B 0 UNP O94267 EXPRESSION TAG SEQRES 1 A 444 GLY ALA MSE ALA GLU TYR GLU ILE ASP GLU ILE THR PHE SEQRES 2 A 444 HIS LYS ARG LEU GLY ILE LEU LEU THR SER TRP LYS ASN SEQRES 3 A 444 GLU GLU ASP GLY LYS THR LEU PHE GLN ASP CYS ASP SER SEQRES 4 A 444 ILE LEU VAL THR VAL GLY ALA HIS ASP ASP THR ASN PRO SEQRES 5 A 444 TYR GLN LYS SER THR ALA LEU HIS THR TRP LEU LEU GLY SEQRES 6 A 444 TYR GLU PHE PRO SER THR LEU ILE LEU LEU GLU LYS HIS SEQRES 7 A 444 ARG ILE THR ILE LEU THR SER VAL ASN LYS ALA ASN MSE SEQRES 8 A 444 LEU THR LYS LEU ALA GLU THR LYS GLY ALA ALA ALA ASP SEQRES 9 A 444 VAL ASN ILE LEU LYS ARG THR LYS ASP ALA GLU GLU ASN SEQRES 10 A 444 LYS LYS LEU PHE GLU LYS ILE ILE GLU TYR ILE ARG ALA SEQRES 11 A 444 THR ASN LYS LYS VAL GLY VAL PHE PRO LYS ASP LYS THR SEQRES 12 A 444 GLN GLY LYS PHE ILE ASN GLU TRP ASP SER ILE PHE GLU SEQRES 13 A 444 PRO VAL LYS SER GLU PHE ASN LEU VAL ASP ALA SER LEU SEQRES 14 A 444 GLY LEU ALA LYS CYS LEU ALA ILE LYS ASP GLU GLN GLU SEQRES 15 A 444 LEU ALA ASN ILE LYS GLY ALA SER ARG VAL SER VAL ALA SEQRES 16 A 444 VAL MSE SER LYS TYR PHE VAL ASP GLU LEU SER THR TYR SEQRES 17 A 444 ILE ASP GLN GLY LYS LYS ILE THR HIS SER LYS PHE SER SEQRES 18 A 444 ASP GLN MSE GLU SER LEU ILE ASP ASN GLU ALA PHE PHE SEQRES 19 A 444 GLN THR LYS SER LEU LYS LEU GLY ASP ILE ASP LEU ASP SEQRES 20 A 444 GLN LEU GLU TRP CYS TYR THR PRO ILE ILE GLN SER GLY SEQRES 21 A 444 GLY SER TYR ASP LEU LYS PRO SER ALA ILE THR ASP ASP SEQRES 22 A 444 ARG ASN LEU HIS GLY ASP VAL VAL LEU CYS SER LEU GLY SEQRES 23 A 444 PHE ARG TYR LYS SER TYR CYS SER ASN VAL GLY ARG THR SEQRES 24 A 444 TYR LEU PHE ASP PRO ASP SER GLU GLN GLN LYS ASN TYR SEQRES 25 A 444 SER PHE LEU VAL ALA LEU GLN LYS LYS LEU PHE GLU TYR SEQRES 26 A 444 CYS ARG ASP GLY ALA VAL ILE GLY ASP ILE TYR THR LYS SEQRES 27 A 444 ILE LEU GLY LEU ILE ARG ALA LYS ARG PRO ASP LEU GLU SEQRES 28 A 444 PRO ASN PHE VAL ARG ASN LEU GLY ALA GLY ILE GLY ILE SEQRES 29 A 444 GLU PHE ARG GLU SER SER LEU LEU VAL ASN ALA LYS ASN SEQRES 30 A 444 PRO ARG VAL LEU GLN ALA GLY MSE THR LEU ASN LEU SER SEQRES 31 A 444 ILE GLY PHE GLY ASN LEU ILE ASN PRO HIS PRO LYS ASN SEQRES 32 A 444 SER GLN SER LYS GLU TYR ALA LEU LEU LEU ILE ASP THR SEQRES 33 A 444 ILE GLN ILE THR ARG SER ASP PRO ILE VAL PHE THR ASP SEQRES 34 A 444 SER PRO LYS ALA GLN GLY ASP ILE SER TYR PHE PHE GLY SEQRES 35 A 444 GLU ASP SEQRES 1 B 444 GLY ALA MSE ALA GLU TYR GLU ILE ASP GLU ILE THR PHE SEQRES 2 B 444 HIS LYS ARG LEU GLY ILE LEU LEU THR SER TRP LYS ASN SEQRES 3 B 444 GLU GLU ASP GLY LYS THR LEU PHE GLN ASP CYS ASP SER SEQRES 4 B 444 ILE LEU VAL THR VAL GLY ALA HIS ASP ASP THR ASN PRO SEQRES 5 B 444 TYR GLN LYS SER THR ALA LEU HIS THR TRP LEU LEU GLY SEQRES 6 B 444 TYR GLU PHE PRO SER THR LEU ILE LEU LEU GLU LYS HIS SEQRES 7 B 444 ARG ILE THR ILE LEU THR SER VAL ASN LYS ALA ASN MSE SEQRES 8 B 444 LEU THR LYS LEU ALA GLU THR LYS GLY ALA ALA ALA ASP SEQRES 9 B 444 VAL ASN ILE LEU LYS ARG THR LYS ASP ALA GLU GLU ASN SEQRES 10 B 444 LYS LYS LEU PHE GLU LYS ILE ILE GLU TYR ILE ARG ALA SEQRES 11 B 444 THR ASN LYS LYS VAL GLY VAL PHE PRO LYS ASP LYS THR SEQRES 12 B 444 GLN GLY LYS PHE ILE ASN GLU TRP ASP SER ILE PHE GLU SEQRES 13 B 444 PRO VAL LYS SER GLU PHE ASN LEU VAL ASP ALA SER LEU SEQRES 14 B 444 GLY LEU ALA LYS CYS LEU ALA ILE LYS ASP GLU GLN GLU SEQRES 15 B 444 LEU ALA ASN ILE LYS GLY ALA SER ARG VAL SER VAL ALA SEQRES 16 B 444 VAL MSE SER LYS TYR PHE VAL ASP GLU LEU SER THR TYR SEQRES 17 B 444 ILE ASP GLN GLY LYS LYS ILE THR HIS SER LYS PHE SER SEQRES 18 B 444 ASP GLN MSE GLU SER LEU ILE ASP ASN GLU ALA PHE PHE SEQRES 19 B 444 GLN THR LYS SER LEU LYS LEU GLY ASP ILE ASP LEU ASP SEQRES 20 B 444 GLN LEU GLU TRP CYS TYR THR PRO ILE ILE GLN SER GLY SEQRES 21 B 444 GLY SER TYR ASP LEU LYS PRO SER ALA ILE THR ASP ASP SEQRES 22 B 444 ARG ASN LEU HIS GLY ASP VAL VAL LEU CYS SER LEU GLY SEQRES 23 B 444 PHE ARG TYR LYS SER TYR CYS SER ASN VAL GLY ARG THR SEQRES 24 B 444 TYR LEU PHE ASP PRO ASP SER GLU GLN GLN LYS ASN TYR SEQRES 25 B 444 SER PHE LEU VAL ALA LEU GLN LYS LYS LEU PHE GLU TYR SEQRES 26 B 444 CYS ARG ASP GLY ALA VAL ILE GLY ASP ILE TYR THR LYS SEQRES 27 B 444 ILE LEU GLY LEU ILE ARG ALA LYS ARG PRO ASP LEU GLU SEQRES 28 B 444 PRO ASN PHE VAL ARG ASN LEU GLY ALA GLY ILE GLY ILE SEQRES 29 B 444 GLU PHE ARG GLU SER SER LEU LEU VAL ASN ALA LYS ASN SEQRES 30 B 444 PRO ARG VAL LEU GLN ALA GLY MSE THR LEU ASN LEU SER SEQRES 31 B 444 ILE GLY PHE GLY ASN LEU ILE ASN PRO HIS PRO LYS ASN SEQRES 32 B 444 SER GLN SER LYS GLU TYR ALA LEU LEU LEU ILE ASP THR SEQRES 33 B 444 ILE GLN ILE THR ARG SER ASP PRO ILE VAL PHE THR ASP SEQRES 34 B 444 SER PRO LYS ALA GLN GLY ASP ILE SER TYR PHE PHE GLY SEQRES 35 B 444 GLU ASP MODRES 3CB5 MSE A 1 MET SELENOMETHIONINE MODRES 3CB5 MSE A 89 MET SELENOMETHIONINE MODRES 3CB5 MSE A 195 MET SELENOMETHIONINE MODRES 3CB5 MSE A 222 MET SELENOMETHIONINE MODRES 3CB5 MSE A 383 MET SELENOMETHIONINE MODRES 3CB5 MSE B 1 MET SELENOMETHIONINE MODRES 3CB5 MSE B 89 MET SELENOMETHIONINE MODRES 3CB5 MSE B 195 MET SELENOMETHIONINE MODRES 3CB5 MSE B 222 MET SELENOMETHIONINE MODRES 3CB5 MSE B 383 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 89 8 HET MSE A 195 8 HET MSE A 222 8 HET MSE A 383 8 HET MSE B 1 8 HET MSE B 89 13 HET MSE B 195 8 HET MSE B 222 8 HET MSE B 383 8 HET B3P A1000 19 HETNAM MSE SELENOMETHIONINE HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 B3P C11 H26 N2 O6 FORMUL 4 HOH *451(H2 O) HELIX 1 1 ASP A 7 ASN A 24 1 18 HELIX 2 2 ASN A 24 LEU A 31 1 8 HELIX 3 3 GLN A 52 GLY A 63 1 12 HELIX 4 4 VAL A 84 THR A 91 1 8 HELIX 5 5 LYS A 92 GLU A 95 5 4 HELIX 6 6 ASP A 111 ALA A 128 1 18 HELIX 7 7 GLY A 143 GLU A 154 1 12 HELIX 8 8 PRO A 155 PHE A 160 5 6 HELIX 9 9 ALA A 165 ILE A 175 1 11 HELIX 10 10 ASP A 177 GLN A 209 1 33 HELIX 11 11 THR A 214 LEU A 225 1 12 HELIX 12 12 ILE A 226 ASN A 228 5 3 HELIX 13 13 ALA A 230 THR A 234 5 5 HELIX 14 14 ASP A 243 ASP A 245 5 3 HELIX 15 15 ASP A 303 CYS A 324 1 22 HELIX 16 16 VAL A 329 ARG A 345 1 17 HELIX 17 17 PRO A 346 PHE A 352 5 7 HELIX 18 18 GLU A 366 LEU A 370 5 5 HELIX 19 19 ALA A 431 ILE A 435 1 5 HELIX 20 20 ASP B 7 ASN B 24 1 18 HELIX 21 21 ASN B 24 LEU B 31 1 8 HELIX 22 22 GLN B 52 GLY B 63 1 12 HELIX 23 23 SER B 83 MSE B 89 1 7 HELIX 24 24 LEU B 90 ALA B 94 5 5 HELIX 25 25 ASP B 111 ALA B 128 1 18 HELIX 26 26 GLY B 143 GLU B 154 1 12 HELIX 27 27 VAL B 156 PHE B 160 5 5 HELIX 28 28 ALA B 165 ILE B 175 1 11 HELIX 29 29 ASP B 177 LYS B 197 1 21 HELIX 30 30 LYS B 197 GLN B 209 1 13 HELIX 31 31 THR B 214 LEU B 225 1 12 HELIX 32 32 ILE B 226 PHE B 232 5 7 HELIX 33 33 ASP B 243 ASP B 245 5 3 HELIX 34 34 ASP B 303 CYS B 324 1 22 HELIX 35 35 VAL B 329 ARG B 345 1 17 HELIX 36 36 PRO B 346 PHE B 352 5 7 HELIX 37 37 GLU B 366 LEU B 370 5 5 HELIX 38 38 ALA B 431 ILE B 435 1 5 SHEET 1 A 6 ASP A 102 ARG A 108 0 SHEET 2 A 6 ARG A 77 SER A 83 1 N THR A 82 O ARG A 108 SHEET 3 A 6 THR A 69 GLU A 74 -1 N LEU A 70 O LEU A 81 SHEET 4 A 6 SER A 37 VAL A 42 -1 N VAL A 40 O ILE A 71 SHEET 5 A 6 LYS A 132 VAL A 135 1 O GLY A 134 N SER A 37 SHEET 6 A 6 ASN A 161 ASP A 164 1 O VAL A 163 N VAL A 135 SHEET 1 B 3 LEU A 247 TRP A 249 0 SHEET 2 B 3 PHE A 285 TYR A 287 -1 O ARG A 286 N GLU A 248 SHEET 3 B 3 TYR A 290 CYS A 291 -1 O TYR A 290 N TYR A 287 SHEET 1 C 4 ILE A 254 GLN A 256 0 SHEET 2 C 4 VAL A 278 LEU A 283 -1 O LEU A 280 N GLN A 256 SHEET 3 C 4 VAL A 294 PHE A 300 -1 O TYR A 298 N VAL A 279 SHEET 4 C 4 SER A 436 TYR A 437 1 O TYR A 437 N LEU A 299 SHEET 1 D 4 GLY A 357 GLY A 359 0 SHEET 2 D 4 THR A 384 ILE A 395 -1 O ASN A 386 N ALA A 358 SHEET 3 D 4 GLU A 406 GLN A 416 -1 O TYR A 407 N LEU A 394 SHEET 4 D 4 ILE A 423 VAL A 424 -1 O ILE A 423 N GLN A 416 SHEET 1 E 6 ASP B 102 LYS B 107 0 SHEET 2 E 6 ARG B 77 THR B 82 1 N ILE B 80 O LEU B 106 SHEET 3 E 6 THR B 69 GLU B 74 -1 N LEU B 70 O LEU B 81 SHEET 4 E 6 SER B 37 VAL B 42 -1 N ILE B 38 O LEU B 73 SHEET 5 E 6 LYS B 132 VAL B 135 1 O GLY B 134 N SER B 37 SHEET 6 E 6 ASN B 161 ASP B 164 1 O VAL B 163 N VAL B 135 SHEET 1 F 3 LEU B 247 TRP B 249 0 SHEET 2 F 3 PHE B 285 TYR B 287 -1 O ARG B 286 N GLU B 248 SHEET 3 F 3 TYR B 290 CYS B 291 -1 O TYR B 290 N TYR B 287 SHEET 1 G 4 ILE B 254 GLN B 256 0 SHEET 2 G 4 VAL B 278 LEU B 283 -1 O LEU B 280 N GLN B 256 SHEET 3 G 4 VAL B 294 PHE B 300 -1 O TYR B 298 N VAL B 279 SHEET 4 G 4 SER B 436 TYR B 437 1 O TYR B 437 N LEU B 299 SHEET 1 H 4 GLY B 357 GLY B 359 0 SHEET 2 H 4 THR B 384 ILE B 395 -1 O ASN B 386 N ALA B 358 SHEET 3 H 4 GLU B 406 GLN B 416 -1 O LEU B 409 N PHE B 391 SHEET 4 H 4 ILE B 423 VAL B 424 -1 O ILE B 423 N GLN B 416 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C ASN A 88 N MSE A 89 1555 1555 1.32 LINK C MSE A 89 N LEU A 90 1555 1555 1.32 LINK C VAL A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N SER A 196 1555 1555 1.32 LINK C GLN A 221 N MSE A 222 1555 1555 1.31 LINK C MSE A 222 N GLU A 223 1555 1555 1.32 LINK C GLY A 382 N MSE A 383 1555 1555 1.32 LINK C MSE A 383 N THR A 384 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.32 LINK C ASN B 88 N MSE B 89 1555 1555 1.32 LINK C MSE B 89 N LEU B 90 1555 1555 1.32 LINK C VAL B 194 N MSE B 195 1555 1555 1.33 LINK C MSE B 195 N SER B 196 1555 1555 1.32 LINK C GLN B 221 N MSE B 222 1555 1555 1.32 LINK C MSE B 222 N GLU B 223 1555 1555 1.32 LINK C GLY B 382 N MSE B 383 1555 1555 1.32 LINK C MSE B 383 N THR B 384 1555 1555 1.33 SITE 1 AC1 8 ILE A 226 ASP A 227 ASP A 245 LEU A 247 SITE 2 AC1 8 GLU A 248 HOH A1097 HIS B 45 ASP B 47 CRYST1 97.070 101.650 103.510 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009661 0.00000