HEADER TRANSFERASE 21-FEB-08 3CBF TITLE CRYSTAL STRUCTURE OF LYSN, ALPHA-AMINOADIPATE AMINOTRANSFERASE, FROM TITLE 2 THERMUS THERMOPHILUS HB27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMINODIPATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.39; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: LYSN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON-PLUS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-LYSN7 KEYWDS ALPHA-AMINOADIPATE AMINOTRANSFERASE, THERMUS THERMOPHILUS, SUBSTRATE KEYWDS 2 SPECIFITY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOMITA,T.MIYAZAKI,T.MIYAGAWA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA REVDAT 2 01-NOV-23 3CBF 1 REMARK REVDAT 1 13-JAN-09 3CBF 0 JRNL AUTH T.TOMITA,T.MIYAGAWA,T.MIYAZAKI,S.FUSHINOBU,T.KUZUYAMA, JRNL AUTH 2 M.NISHIYAMA JRNL TITL MECHANISM FOR MULTIPLE-SUBSTRATES RECOGNITION OF JRNL TITL 2 ALPHA-AMINOADIPATE AMINOTRANSFERASE FROM THERMUS JRNL TITL 3 THERMOPHILUS JRNL REF PROTEINS 2008 JRNL REFN ESSN 1097-0134 JRNL PMID 18831049 JRNL DOI 10.1002/PROT.22245 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.MIYAZAKI,J.MIYAZAKI,H.YAMANE,M.NISHIYAMA REMARK 1 TITL ALPHA-AMINOADIPATE AMINOTRANSFERASE FROM AN EXTREME REMARK 1 TITL 2 THERMOPHILIC BACTERIUM, THERMUS THERMOPHILUS REMARK 1 REF MICROBIOLOGY (READING, V. 150 2327 2004 REMARK 1 REF 2 ENGL.) REMARK 1 REFN ISSN 1350-0872 REMARK 1 PMID 15256574 REMARK 1 DOI 10.1099/MIC.0.27037-0 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELYHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 83725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4415 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 299 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6350 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8598 ; 1.491 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 800 ; 5.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;36.507 ;22.437 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1093 ;16.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;19.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 928 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4856 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3353 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4342 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 428 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4051 ; 0.854 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6281 ; 1.359 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2584 ; 2.212 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2308 ; 3.529 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : 0.55600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Z1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2M POTASSIUM FLUORIDE, REMARK 280 PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.63950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.63950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 397 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 LEU B 4 REMARK 465 VAL B 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 105 O HOH B 773 1.61 REMARK 500 O HOH B 639 O HOH B 791 1.95 REMARK 500 O HOH B 584 O HOH B 789 1.96 REMARK 500 NH2 ARG B 223 O HOH B 788 2.18 REMARK 500 NH1 ARG B 133 O HOH B 639 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU A 367 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -108.84 -94.53 REMARK 500 PHE A 172 62.56 65.15 REMARK 500 ASP A 203 42.89 -108.81 REMARK 500 LEU A 208 36.04 -96.27 REMARK 500 LEU A 240 -71.75 -143.76 REMARK 500 ARG A 245 60.24 62.73 REMARK 500 ASP A 267 10.46 -157.13 REMARK 500 LEU A 268 -69.51 68.22 REMARK 500 PRO A 332 106.86 -58.75 REMARK 500 LYS A 333 108.03 -23.57 REMARK 500 ALA B 38 -110.12 -96.19 REMARK 500 PHE B 172 62.26 66.96 REMARK 500 LEU B 208 37.16 -94.57 REMARK 500 LEU B 240 -66.64 -138.63 REMARK 500 ARG B 245 70.77 47.93 REMARK 500 ASP B 267 11.38 -157.49 REMARK 500 LEU B 268 -70.77 68.42 REMARK 500 LYS B 333 109.68 -55.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N5F A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N5F B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DTV RELATED DB: PDB REMARK 900 LEUCINE AND PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME REMARK 900 PROTEIN. REMARK 900 RELATED ID: 2EGY RELATED DB: PDB REMARK 900 PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME PROTEIN. REMARK 900 RELATED ID: 2Z1Y RELATED DB: PDB REMARK 900 N-(5'-PHOSPHOPYRIDOXYL)-L-LEUCINE COMPLEXED FORM OF THE SAME REMARK 900 PROTEIN. DBREF 3CBF A 1 397 UNP Q72LL6 Q72LL6_THET2 1 397 DBREF 3CBF B 1 397 UNP Q72LL6 Q72LL6_THET2 1 397 SEQRES 1 A 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY SEQRES 2 A 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU SEQRES 3 A 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY SEQRES 4 A 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA SEQRES 5 A 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU SEQRES 6 A 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO SEQRES 7 A 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO SEQRES 8 A 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU SEQRES 9 A 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO SEQRES 10 A 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN SEQRES 11 A 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO SEQRES 12 A 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU SEQRES 13 A 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE SEQRES 14 A 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU SEQRES 15 A 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG SEQRES 16 A 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU SEQRES 17 A 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU SEQRES 18 A 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY SEQRES 19 A 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA SEQRES 20 A 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL SEQRES 21 A 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU SEQRES 22 A 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE SEQRES 23 A 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU SEQRES 24 A 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL SEQRES 25 A 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET SEQRES 26 A 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU SEQRES 27 A 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE SEQRES 28 A 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU SEQRES 29 A 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU SEQRES 30 A 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU SEQRES 31 A 397 LYS GLY LEU LEU ALA LEU VAL SEQRES 1 B 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY SEQRES 2 B 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU SEQRES 3 B 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY SEQRES 4 B 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA SEQRES 5 B 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU SEQRES 6 B 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO SEQRES 7 B 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO SEQRES 8 B 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU SEQRES 9 B 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO SEQRES 10 B 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN SEQRES 11 B 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO SEQRES 12 B 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU SEQRES 13 B 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE SEQRES 14 B 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU SEQRES 15 B 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG SEQRES 16 B 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU SEQRES 17 B 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU SEQRES 18 B 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY SEQRES 19 B 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA SEQRES 20 B 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL SEQRES 21 B 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU SEQRES 22 B 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE SEQRES 23 B 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU SEQRES 24 B 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL SEQRES 25 B 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET SEQRES 26 B 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU SEQRES 27 B 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE SEQRES 28 B 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU SEQRES 29 B 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU SEQRES 30 B 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU SEQRES 31 B 397 LYS GLY LEU LEU ALA LEU VAL HET N5F A 500 26 HET N5F B 501 26 HETNAM N5F (2S)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 N5F METHYL]PYRIDIN-4-YL}METHYL)AMINO]HEXANEDIOIC ACID FORMUL 3 N5F 2(C14 H21 N2 O9 P) FORMUL 5 HOH *431(H2 O) HELIX 1 1 SER A 5 PHE A 10 1 6 HELIX 2 2 GLY A 11 ILE A 17 1 7 HELIX 3 3 SER A 20 GLN A 30 1 11 HELIX 4 4 ALA A 43 PHE A 47 5 5 HELIX 5 5 PRO A 48 LEU A 68 1 21 HELIX 6 6 TYR A 76 GLY A 88 1 13 HELIX 7 7 ARG A 90 GLU A 92 5 3 HELIX 8 8 GLY A 99 LEU A 112 1 14 HELIX 9 9 TYR A 125 LEU A 134 1 10 HELIX 10 10 ASP A 150 GLU A 161 1 12 HELIX 11 11 PRO A 181 GLY A 196 1 16 HELIX 12 12 SER A 217 GLY A 226 1 10 HELIX 13 13 HIS A 252 LEU A 268 1 17 HELIX 14 14 PRO A 271 LYS A 283 1 13 HELIX 15 15 GLY A 285 VAL A 312 1 28 HELIX 16 16 SER A 336 GLU A 347 1 12 HELIX 17 17 GLY A 355 PHE A 358 5 4 HELIX 18 18 ASP A 375 LEU A 396 1 22 HELIX 19 19 SER B 5 PHE B 10 1 6 HELIX 20 20 GLY B 11 ILE B 17 1 7 HELIX 21 21 SER B 20 GLN B 30 1 11 HELIX 22 22 ALA B 43 PHE B 47 5 5 HELIX 23 23 PRO B 48 LEU B 68 1 21 HELIX 24 24 TYR B 76 GLY B 88 1 13 HELIX 25 25 ARG B 90 GLU B 92 5 3 HELIX 26 26 THR B 98 LEU B 112 1 15 HELIX 27 27 TYR B 125 LEU B 134 1 10 HELIX 28 28 ASP B 150 GLU B 161 1 12 HELIX 29 29 PRO B 181 GLY B 196 1 16 HELIX 30 30 SER B 217 GLY B 226 1 10 HELIX 31 31 HIS B 252 LEU B 268 1 17 HELIX 32 32 PRO B 271 LYS B 283 1 13 HELIX 33 33 GLY B 285 VAL B 312 1 28 HELIX 34 34 SER B 336 GLU B 347 1 12 HELIX 35 35 GLY B 355 PHE B 358 5 4 HELIX 36 36 ASP B 375 LEU B 396 1 22 SHEET 1 A 5 LEU A 35 PHE A 37 0 SHEET 2 A 5 VAL A 349 PRO A 353 1 O ALA A 350 N PHE A 37 SHEET 3 A 5 THR A 366 SER A 370 -1 O ARG A 368 N VAL A 352 SHEET 4 A 5 PHE A 326 GLU A 330 -1 N VAL A 327 O LEU A 369 SHEET 5 A 5 ARG A 317 TYR A 318 -1 N ARG A 317 O GLU A 330 SHEET 1 B 8 VAL A 94 THR A 97 0 SHEET 2 B 8 ALA A 247 VAL A 250 -1 O ALA A 249 N LEU A 95 SHEET 3 B 8 VAL A 230 SER A 235 -1 N TYR A 232 O VAL A 250 SHEET 4 B 8 VAL A 199 ASP A 202 1 N VAL A 199 O ILE A 231 SHEET 5 B 8 LEU A 166 LEU A 168 1 N LEU A 166 O VAL A 200 SHEET 6 B 8 PRO A 117 ALA A 122 1 N LEU A 119 O TYR A 167 SHEET 7 B 8 ARG A 138 GLY A 145 1 O LEU A 140 N VAL A 118 SHEET 8 B 8 GLY A 148 PRO A 149 -1 O GLY A 148 N GLY A 145 SHEET 1 C 5 LEU B 35 PHE B 37 0 SHEET 2 C 5 VAL B 349 PRO B 353 1 O ALA B 350 N PHE B 37 SHEET 3 C 5 THR B 366 SER B 370 -1 O ARG B 368 N VAL B 352 SHEET 4 C 5 PHE B 326 GLU B 330 -1 N VAL B 327 O LEU B 369 SHEET 5 C 5 ARG B 317 TYR B 318 -1 N ARG B 317 O GLU B 330 SHEET 1 D 5 VAL B 94 THR B 97 0 SHEET 2 D 5 ALA B 247 VAL B 250 -1 O ALA B 249 N LEU B 95 SHEET 3 D 5 VAL B 230 SER B 235 -1 N GLY B 234 O PHE B 248 SHEET 4 D 5 VAL B 199 ASP B 202 1 N VAL B 199 O ILE B 231 SHEET 5 D 5 LEU B 166 LEU B 168 1 N LEU B 166 O VAL B 200 SHEET 1 E 3 PRO B 117 ALA B 122 0 SHEET 2 E 3 ARG B 138 GLY B 145 1 O LEU B 140 N VAL B 118 SHEET 3 E 3 GLY B 148 PRO B 149 -1 O GLY B 148 N GLY B 145 CISPEP 1 ALA A 122 PRO A 123 0 -0.27 CISPEP 2 ASN A 174 PRO A 175 0 9.72 CISPEP 3 ALA B 122 PRO B 123 0 -1.12 CISPEP 4 ASN B 174 PRO B 175 0 10.81 SITE 1 AC1 17 ILE A 22 ARG A 23 GLY A 39 GLY A 40 SITE 2 AC1 17 GLY A 99 SER A 100 GLN A 101 TYR A 125 SITE 3 AC1 17 ASN A 174 ASP A 202 TYR A 205 SER A 235 SITE 4 AC1 17 SER A 237 LYS A 238 ARG A 245 ARG A 368 SITE 5 AC1 17 TYR B 70 SITE 1 AC2 17 TYR A 70 ILE B 22 ARG B 23 GLY B 39 SITE 2 AC2 17 GLY B 40 GLY B 99 SER B 100 GLN B 101 SITE 3 AC2 17 TYR B 125 ASN B 174 ASP B 202 TYR B 205 SITE 4 AC2 17 SER B 235 SER B 237 LYS B 238 ARG B 245 SITE 5 AC2 17 ARG B 368 CRYST1 55.279 93.243 150.880 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006628 0.00000