HEADER TRANSFERASE 22-FEB-08 3CBU TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLUTATHIONE S-TRANSFERASE (REUT_A1011) TITLE 2 FROM RALSTONIA EUTROPHA JMP134 AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GST-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 STRAIN: JMP134; SOURCE 5 GENE: YP_295234.1, REUT_A1011; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THIOREDOXIN FOLD, GST C-TERMINAL DOMAIN-LIKE FOLD, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3CBU 1 REMARK SEQADV REVDAT 6 24-JUL-19 3CBU 1 REMARK LINK REVDAT 5 25-OCT-17 3CBU 1 REMARK REVDAT 4 13-JUL-11 3CBU 1 VERSN REVDAT 3 23-MAR-11 3CBU 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3CBU 1 VERSN REVDAT 1 04-MAR-08 3CBU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GLUTATHIONE S-TRANSFERASE JRNL TITL 2 (YP_295234.1) FROM RALSTONIA EUTROPHA JMP134 AT 2.05 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3361 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2262 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4568 ; 1.525 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5554 ; 1.487 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;36.544 ;24.219 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;13.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.469 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3678 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 644 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2133 ; 1.806 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 840 ; 0.644 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3440 ; 2.871 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1228 ; 4.690 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1126 ; 6.346 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 210 5 REMARK 3 1 B 1 B 210 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1233 ; 0.150 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 B (A): 1449 ; 0.330 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1233 ; 0.920 ; 2.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1449 ; 1.080 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 84.1470 42.4570 9.5640 REMARK 3 T TENSOR REMARK 3 T11: -0.0639 T22: -0.0354 REMARK 3 T33: -0.0384 T12: -0.0014 REMARK 3 T13: 0.0243 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.6471 L22: 0.5365 REMARK 3 L33: 0.7681 L12: 0.0779 REMARK 3 L13: -0.1243 L23: -0.1282 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0015 S13: -0.1254 REMARK 3 S21: 0.0375 S22: -0.0132 S23: 0.0162 REMARK 3 S31: 0.0869 S32: 0.0393 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 85.1400 58.3240 -8.0590 REMARK 3 T TENSOR REMARK 3 T11: -0.0616 T22: -0.0152 REMARK 3 T33: -0.0602 T12: 0.0070 REMARK 3 T13: 0.0260 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.7826 L22: 0.7102 REMARK 3 L33: 0.9228 L12: -0.2822 REMARK 3 L13: 0.2658 L23: -0.2873 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.0956 S13: -0.0186 REMARK 3 S21: -0.1083 S22: 0.0165 S23: 0.0358 REMARK 3 S31: -0.0472 S32: 0.0503 S33: -0.0424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. THERE IS UNMODELED DENSITY NEAR SER 10 IN EACH CHAIN, WHICH REMARK 3 IS THE PUTATIVE GLUTATHIONE BINDING SITE. REMARK 3 5. PO4 AND EDO WERE MODELED BASED ON CRYSTALLIZATION REMARK 3 AND CRYOPROTECTION CONDITIONS. REMARK 4 REMARK 4 3CBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 11.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97879, 0.97935 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 29.683 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M LITHIUM SULFATE, 0.79M REMARK 280 SODIUM DIHYDROGEN PHOSPHATE, 0.891M DI-POTASSIUM HYDROGEN REMARK 280 PHOSPHATE, 0.1M CAPS PH 11.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.21500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.40500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.81000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.40500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 212 REMARK 465 LYS A 213 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 125 CE NZ REMARK 470 LYS A 136 CD CE NZ REMARK 470 LYS A 173 CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS A 186 CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LYS B 125 CD CE NZ REMARK 470 LYS B 136 CD CE NZ REMARK 470 LYS B 182 CE NZ REMARK 470 LYS B 186 CD CE NZ REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 ASN B 212 CG OD1 ND2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 61 CB GLU B 61 CG 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377866 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CBU A 1 213 UNP Q473P3 Q473P3_RALEJ 1 213 DBREF 3CBU B 1 213 UNP Q473P3 Q473P3_RALEJ 1 213 SEQADV 3CBU GLY A 0 UNP Q473P3 EXPRESSION TAG SEQADV 3CBU GLY B 0 UNP Q473P3 EXPRESSION TAG SEQRES 1 A 214 GLY MSE LEU LYS LEU CYS GLY PHE ALA ALA SER ASN TYR SEQRES 2 A 214 TYR ASN LYS VAL LYS LEU ALA LEU LEU GLU LYS ASN VAL SEQRES 3 A 214 PRO PHE GLU GLU VAL LEU ALA TRP ILE GLY GLU THR ASP SEQRES 4 A 214 THR THR ALA THR PRO ALA GLY LYS VAL PRO TYR MSE ILE SEQRES 5 A 214 THR GLU SER GLY SER LEU CYS GLU SER GLU VAL ILE ASN SEQRES 6 A 214 GLU TYR LEU GLU ALA ALA TYR PRO GLN THR PRO LEU LEU SEQRES 7 A 214 PRO ARG ASP PRO MSE GLN ALA GLY LYS VAL ARG GLU ILE SEQRES 8 A 214 VAL THR PHE LEU GLU LEU TYR LEU GLU LEU THR ALA ARG SEQRES 9 A 214 GLU LEU TYR PRO GLU ALA PHE PHE GLY GLY LYS VAL SER SEQRES 10 A 214 ASP ASN VAL LYS GLU ARG GLN LEU LYS LEU LEU SER ARG SEQRES 11 A 214 TYR VAL PRO ALA PHE ALA LYS LEU ALA LYS PHE SER PRO SEQRES 12 A 214 TYR VAL ALA GLY ASP THR PHE THR LEU ALA ASP CYS ALA SEQRES 13 A 214 ALA ALA VAL HIS LEU PRO LEU VAL SER SER CYS THR LYS SEQRES 14 A 214 ILE ILE TYR GLY LYS ASP LEU LEU ALA ASP LEU PRO VAL SEQRES 15 A 214 LYS GLU TYR LEU LYS THR LEU SER GLU ARG PRO SER VAL SEQRES 16 A 214 GLN LYS VAL ASN ALA ASP ARG LYS ALA ASN THR GLU LEU SEQRES 17 A 214 MSE LEU SER ARG ASN LYS SEQRES 1 B 214 GLY MSE LEU LYS LEU CYS GLY PHE ALA ALA SER ASN TYR SEQRES 2 B 214 TYR ASN LYS VAL LYS LEU ALA LEU LEU GLU LYS ASN VAL SEQRES 3 B 214 PRO PHE GLU GLU VAL LEU ALA TRP ILE GLY GLU THR ASP SEQRES 4 B 214 THR THR ALA THR PRO ALA GLY LYS VAL PRO TYR MSE ILE SEQRES 5 B 214 THR GLU SER GLY SER LEU CYS GLU SER GLU VAL ILE ASN SEQRES 6 B 214 GLU TYR LEU GLU ALA ALA TYR PRO GLN THR PRO LEU LEU SEQRES 7 B 214 PRO ARG ASP PRO MSE GLN ALA GLY LYS VAL ARG GLU ILE SEQRES 8 B 214 VAL THR PHE LEU GLU LEU TYR LEU GLU LEU THR ALA ARG SEQRES 9 B 214 GLU LEU TYR PRO GLU ALA PHE PHE GLY GLY LYS VAL SER SEQRES 10 B 214 ASP ASN VAL LYS GLU ARG GLN LEU LYS LEU LEU SER ARG SEQRES 11 B 214 TYR VAL PRO ALA PHE ALA LYS LEU ALA LYS PHE SER PRO SEQRES 12 B 214 TYR VAL ALA GLY ASP THR PHE THR LEU ALA ASP CYS ALA SEQRES 13 B 214 ALA ALA VAL HIS LEU PRO LEU VAL SER SER CYS THR LYS SEQRES 14 B 214 ILE ILE TYR GLY LYS ASP LEU LEU ALA ASP LEU PRO VAL SEQRES 15 B 214 LYS GLU TYR LEU LYS THR LEU SER GLU ARG PRO SER VAL SEQRES 16 B 214 GLN LYS VAL ASN ALA ASP ARG LYS ALA ASN THR GLU LEU SEQRES 17 B 214 MSE LEU SER ARG ASN LYS MODRES 3CBU MSE A 1 MET SELENOMETHIONINE MODRES 3CBU MSE A 50 MET SELENOMETHIONINE MODRES 3CBU MSE A 82 MET SELENOMETHIONINE MODRES 3CBU MSE A 208 MET SELENOMETHIONINE MODRES 3CBU MSE B 1 MET SELENOMETHIONINE MODRES 3CBU MSE B 50 MET SELENOMETHIONINE MODRES 3CBU MSE B 82 MET SELENOMETHIONINE MODRES 3CBU MSE B 208 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 50 8 HET MSE A 82 8 HET MSE A 208 8 HET MSE B 1 8 HET MSE B 50 8 HET MSE B 82 8 HET MSE B 208 8 HET PO4 A 214 5 HET EDO A 215 4 HET EDO A 216 4 HET EDO A 217 4 HET EDO A 218 4 HET EDO B 214 4 HET EDO B 215 4 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 HOH *364(H2 O) HELIX 1 1 SER A 10 ASN A 24 1 15 HELIX 2 2 GLU A 59 TYR A 71 1 13 HELIX 3 3 ASP A 80 LEU A 98 1 19 HELIX 4 4 LEU A 98 GLU A 104 1 7 HELIX 5 5 LEU A 105 PHE A 111 1 7 HELIX 6 6 SER A 116 ALA A 138 1 23 HELIX 7 7 THR A 150 GLY A 172 1 23 HELIX 8 8 PRO A 180 GLU A 190 1 11 HELIX 9 9 ARG A 191 ARG A 211 1 21 HELIX 10 10 SER B 10 LYS B 23 1 14 HELIX 11 11 GLU B 59 TYR B 71 1 13 HELIX 12 12 ASP B 80 LEU B 98 1 19 HELIX 13 13 LEU B 98 GLU B 104 1 7 HELIX 14 14 LEU B 105 PHE B 111 1 7 HELIX 15 15 SER B 116 ALA B 138 1 23 HELIX 16 16 THR B 150 GLY B 172 1 23 HELIX 17 17 PRO B 180 GLU B 190 1 11 HELIX 18 18 ARG B 191 ARG B 211 1 21 SHEET 1 A 4 PHE A 27 LEU A 31 0 SHEET 2 A 4 LEU A 2 GLY A 6 1 N LEU A 4 O VAL A 30 SHEET 3 A 4 TYR A 49 THR A 52 -1 O TYR A 49 N CYS A 5 SHEET 4 A 4 GLY A 55 LEU A 57 -1 O LEU A 57 N MSE A 50 SHEET 1 B 4 PHE B 27 LEU B 31 0 SHEET 2 B 4 LEU B 2 GLY B 6 1 N LEU B 4 O GLU B 28 SHEET 3 B 4 TYR B 49 ILE B 51 -1 O TYR B 49 N CYS B 5 SHEET 4 B 4 SER B 56 LEU B 57 -1 O LEU B 57 N MSE B 50 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C TYR A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ILE A 51 1555 1555 1.32 LINK C PRO A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N GLN A 83 1555 1555 1.33 LINK C LEU A 207 N MSE A 208 1555 1555 1.32 LINK C MSE A 208 N LEU A 209 1555 1555 1.32 LINK C MSE B 1 N LEU B 2 1555 1555 1.32 LINK C TYR B 49 N MSE B 50 1555 1555 1.32 LINK C MSE B 50 N ILE B 51 1555 1555 1.32 LINK C PRO B 81 N MSE B 82 1555 1555 1.32 LINK C MSE B 82 N GLN B 83 1555 1555 1.32 LINK C LEU B 207 N MSE B 208 1555 1555 1.32 LINK C MSE B 208 N LEU B 209 1555 1555 1.33 CISPEP 1 VAL A 47 PRO A 48 0 2.18 CISPEP 2 SER A 141 PRO A 142 0 -0.38 CISPEP 3 VAL B 47 PRO B 48 0 11.82 CISPEP 4 SER B 141 PRO B 142 0 1.32 SITE 1 AC1 6 SER A 116 ASN A 118 ARG A 122 SER B 116 SITE 2 AC1 6 ASN B 118 ARG B 122 SITE 1 AC2 4 PHE A 7 TRP A 33 ILE A 34 ARG A 211 SITE 1 AC3 2 THR B 92 GLU B 95 SITE 1 AC4 4 TYR B 143 THR B 148 PHE B 149 ARG B 191 SITE 1 AC5 4 TYR A 143 THR A 148 PHE A 149 ARG A 191 SITE 1 AC6 6 PRO A 75 LEU A 76 LEU A 77 PRO A 78 SITE 2 AC6 6 THR A 148 PHE A 149 CRYST1 106.840 106.840 113.620 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008801 0.00000 HETATM 1 N MSE A 1 101.376 53.095 23.136 1.00 51.91 N HETATM 2 CA MSE A 1 100.499 51.929 22.739 1.00 51.05 C HETATM 3 C MSE A 1 99.259 52.347 21.970 1.00 46.95 C HETATM 4 O MSE A 1 98.616 53.350 22.294 1.00 48.40 O HETATM 5 CB MSE A 1 100.083 51.101 23.953 1.00 51.47 C HETATM 6 CG MSE A 1 99.508 49.760 23.563 1.00 51.17 C HETATM 7 SE MSE A 1 99.234 48.580 25.098 0.75 65.68 SE HETATM 8 CE MSE A 1 101.108 48.307 25.606 1.00 66.13 C