data_3CEB # _entry.id 3CEB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CEB pdb_00003ceb 10.2210/pdb3ceb/pdb RCSB RCSB046671 ? ? WWPDB D_1000046671 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 377935 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3CEB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-02-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of D-aminoacid Aminotransferase-Like PLP-Dependent Enzyme (YP_718332.1) from Haemophilus somnus 129PT at 2.40 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3CEB _cell.length_a 149.730 _cell.length_b 149.730 _cell.length_c 34.040 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CEB _symmetry.Int_Tables_number 169 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'D-aminoacid aminotransferase-like PLP-dependent enzyme' 23669.717 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 85 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)WQFPLFETILIEQGQAKNISYHQQRYEKSLLKFYPK(MSE)KLQPFDLAKIIAKHTALFTHREGLIRCRIDYNH HDYVLQCFPYQQKVYRTFKPVFCDHIDYSL(LLP)FSDRTLLNNLLKQKEECDEI(MSE)IIRQGKVTDCSIGNLIFRQN NQWITPDKPLLEGTQRAKLLEQKKIIAREIFFEDLAQYEEIRLINA(MSE)NGL ; _entity_poly.pdbx_seq_one_letter_code_can ;GMWQFPLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIRCRIDYNHHDYVLQCF PYQQKVYRTFKPVFCDHIDYSLKFSDRTLLNNLLKQKEECDEIMIIRQGKVTDCSIGNLIFRQNNQWITPDKPLLEGTQR AKLLEQKKIIAREIFFEDLAQYEEIRLINAMNGL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 377935 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 TRP n 1 4 GLN n 1 5 PHE n 1 6 PRO n 1 7 LEU n 1 8 PHE n 1 9 GLU n 1 10 THR n 1 11 ILE n 1 12 LEU n 1 13 ILE n 1 14 GLU n 1 15 GLN n 1 16 GLY n 1 17 GLN n 1 18 ALA n 1 19 LYS n 1 20 ASN n 1 21 ILE n 1 22 SER n 1 23 TYR n 1 24 HIS n 1 25 GLN n 1 26 GLN n 1 27 ARG n 1 28 TYR n 1 29 GLU n 1 30 LYS n 1 31 SER n 1 32 LEU n 1 33 LEU n 1 34 LYS n 1 35 PHE n 1 36 TYR n 1 37 PRO n 1 38 LYS n 1 39 MSE n 1 40 LYS n 1 41 LEU n 1 42 GLN n 1 43 PRO n 1 44 PHE n 1 45 ASP n 1 46 LEU n 1 47 ALA n 1 48 LYS n 1 49 ILE n 1 50 ILE n 1 51 ALA n 1 52 LYS n 1 53 HIS n 1 54 THR n 1 55 ALA n 1 56 LEU n 1 57 PHE n 1 58 THR n 1 59 HIS n 1 60 ARG n 1 61 GLU n 1 62 GLY n 1 63 LEU n 1 64 ILE n 1 65 ARG n 1 66 CYS n 1 67 ARG n 1 68 ILE n 1 69 ASP n 1 70 TYR n 1 71 ASN n 1 72 HIS n 1 73 HIS n 1 74 ASP n 1 75 TYR n 1 76 VAL n 1 77 LEU n 1 78 GLN n 1 79 CYS n 1 80 PHE n 1 81 PRO n 1 82 TYR n 1 83 GLN n 1 84 GLN n 1 85 LYS n 1 86 VAL n 1 87 TYR n 1 88 ARG n 1 89 THR n 1 90 PHE n 1 91 LYS n 1 92 PRO n 1 93 VAL n 1 94 PHE n 1 95 CYS n 1 96 ASP n 1 97 HIS n 1 98 ILE n 1 99 ASP n 1 100 TYR n 1 101 SER n 1 102 LEU n 1 103 LLP n 1 104 PHE n 1 105 SER n 1 106 ASP n 1 107 ARG n 1 108 THR n 1 109 LEU n 1 110 LEU n 1 111 ASN n 1 112 ASN n 1 113 LEU n 1 114 LEU n 1 115 LYS n 1 116 GLN n 1 117 LYS n 1 118 GLU n 1 119 GLU n 1 120 CYS n 1 121 ASP n 1 122 GLU n 1 123 ILE n 1 124 MSE n 1 125 ILE n 1 126 ILE n 1 127 ARG n 1 128 GLN n 1 129 GLY n 1 130 LYS n 1 131 VAL n 1 132 THR n 1 133 ASP n 1 134 CYS n 1 135 SER n 1 136 ILE n 1 137 GLY n 1 138 ASN n 1 139 LEU n 1 140 ILE n 1 141 PHE n 1 142 ARG n 1 143 GLN n 1 144 ASN n 1 145 ASN n 1 146 GLN n 1 147 TRP n 1 148 ILE n 1 149 THR n 1 150 PRO n 1 151 ASP n 1 152 LYS n 1 153 PRO n 1 154 LEU n 1 155 LEU n 1 156 GLU n 1 157 GLY n 1 158 THR n 1 159 GLN n 1 160 ARG n 1 161 ALA n 1 162 LYS n 1 163 LEU n 1 164 LEU n 1 165 GLU n 1 166 GLN n 1 167 LYS n 1 168 LYS n 1 169 ILE n 1 170 ILE n 1 171 ALA n 1 172 ARG n 1 173 GLU n 1 174 ILE n 1 175 PHE n 1 176 PHE n 1 177 GLU n 1 178 ASP n 1 179 LEU n 1 180 ALA n 1 181 GLN n 1 182 TYR n 1 183 GLU n 1 184 GLU n 1 185 ILE n 1 186 ARG n 1 187 LEU n 1 188 ILE n 1 189 ASN n 1 190 ALA n 1 191 MSE n 1 192 ASN n 1 193 GLY n 1 194 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Histophilus _entity_src_gen.pdbx_gene_src_gene 'YP_718332.1, HS_0128' _entity_src_gen.gene_src_species 'Histophilus somni' _entity_src_gen.gene_src_strain 129PT _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus somnus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 205914 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0I0Z6_HAES1 _struct_ref.pdbx_db_accession Q0I0Z6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MWQFPLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIRCRIDYNHHDYVLQCFP YQQKVYRTFKPVFCDHIDYSLKFSDRTLLNNLLKQKEECDEIMIIRQGKVTDCSIGNLIFRQNNQWITPDKPLLEGTQRA KLLEQKKIIAREIFFEDLAQYEEIRLINAMNGL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CEB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0I0Z6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 193 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 193 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CEB _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q0I0Z6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LLP 'L-peptide linking' n '(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid' "N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE" 'C14 H22 N3 O7 P' 375.314 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3CEB # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.65 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 73.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 20.0% Glycerol, 1.27M Ammonium sulfate, 0.1M Sodium acetate pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-01-23 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97928 1.0 3 0.97886 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97928, 0.97886' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3CEB _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 28.296 _reflns.number_obs 17363 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_netI_over_sigmaI 8.620 _reflns.percent_possible_obs 97.000 _reflns.B_iso_Wilson_estimate 41.996 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 2.946 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.40 2.49 5018 ? 3331 0.596 1.6 ? ? ? ? ? 94.30 1 1 2.49 2.58 4664 ? 2974 0.466 2.1 ? ? ? ? ? 98.50 2 1 2.58 2.70 5151 ? 3360 0.401 2.4 ? ? ? ? ? 97.70 3 1 2.70 2.84 5207 ? 3286 0.292 3.3 ? ? ? ? ? 97.90 4 1 2.84 3.02 5089 ? 3306 0.201 4.4 ? ? ? ? ? 98.20 5 1 3.02 3.25 5024 ? 3212 0.133 6.9 ? ? ? ? ? 97.70 6 1 3.25 3.58 5219 ? 3321 0.089 9.7 ? ? ? ? ? 97.40 7 1 3.58 4.09 5135 ? 3207 0.053 15.2 ? ? ? ? ? 96.90 8 1 4.09 5.14 5257 ? 3255 0.039 19.3 ? ? ? ? ? 96.70 9 1 5.14 28.296 5381 ? 3259 0.036 21.2 ? ? ? ? ? 95.20 10 1 # _refine.entry_id 3CEB _refine.ls_d_res_high 2.400 _refine.ls_d_res_low 28.296 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.720 _refine.ls_number_reflns_obs 17351 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. SULFATE IONS AND GLYCEROL MOLECULES FROM CRYSTALLIZATION ARE MODELED IN THIS STRUCTURE. PLP MOLECULE FORMED A COVALENT BOND WITH LYS 102 WITH CLEAR ELECTRON DENSITY SUPPORT. ; _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.225 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 879 _refine.B_iso_mean 26.710 _refine.aniso_B[1][1] -0.730 _refine.aniso_B[2][2] -0.730 _refine.aniso_B[3][3] 1.100 _refine.aniso_B[1][2] -0.370 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R 0.196 _refine.pdbx_overall_ESU_R_Free 0.179 _refine.overall_SU_ML 0.123 _refine.overall_SU_B 10.564 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1630 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 28.296 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1694 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1173 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2288 1.934 1.985 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2855 1.036 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 193 5.346 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 85 33.732 24.235 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 305 13.949 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 14.030 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 244 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1811 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 345 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 970 0.679 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 388 0.147 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1572 1.314 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 724 2.146 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 716 3.385 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.370 _refine_ls_shell.number_reflns_R_work 1200 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.301 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1266 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CEB _struct.title 'Crystal structure of a putative 4-amino-4-deoxychorismate lyase (hs_0128) from haemophilus somnus 129pt at 2.40 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;D-aminoacid aminotransferase-like plp-dependent enzymes fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, lyase ; _struct_keywords.pdbx_keywords LYASE _struct_keywords.entry_id 3CEB # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 20 ? TYR A 36 ? ASN A 19 TYR A 35 1 ? 17 HELX_P HELX_P2 2 ASP A 45 ? LYS A 52 ? ASP A 44 LYS A 51 1 ? 8 HELX_P HELX_P3 3 HIS A 53 ? THR A 58 ? HIS A 52 THR A 57 5 ? 6 HELX_P HELX_P4 4 ARG A 107 ? LYS A 115 ? ARG A 106 LYS A 114 1 ? 9 HELX_P HELX_P5 5 GLN A 116 ? GLU A 118 ? GLN A 115 GLU A 117 5 ? 3 HELX_P HELX_P6 6 GLY A 157 ? GLN A 166 ? GLY A 156 GLN A 165 1 ? 10 HELX_P HELX_P7 7 PHE A 175 ? TYR A 182 ? PHE A 174 TYR A 181 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A TRP 3 N ? ? A MSE 1 A TRP 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? A LYS 38 C ? ? ? 1_555 A MSE 39 N ? ? A LYS 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 39 C ? ? ? 1_555 A LYS 40 N ? ? A MSE 38 A LYS 39 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? A LEU 102 C ? ? ? 1_555 A LLP 103 N ? ? A LEU 101 A LLP 102 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale6 covale both ? A LLP 103 C ? ? ? 1_555 A PHE 104 N ? ? A LLP 102 A PHE 103 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A ILE 123 C ? ? ? 1_555 A MSE 124 N ? ? A ILE 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale8 covale both ? A MSE 124 C ? ? ? 1_555 A ILE 125 N ? ? A MSE 123 A ILE 124 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A ALA 190 C ? ? ? 1_555 A MSE 191 N ? ? A ALA 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale10 covale both ? A MSE 191 C ? ? ? 1_555 A ASN 192 N ? ? A MSE 190 A ASN 191 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 17 ? ALA A 18 ? GLN A 16 ALA A 17 A 2 LEU A 7 ? GLU A 14 ? LEU A 6 GLU A 13 A 3 LEU A 63 ? TYR A 70 ? LEU A 62 TYR A 69 A 4 TYR A 75 ? TYR A 82 ? TYR A 74 TYR A 81 B 1 PHE A 90 ? PHE A 94 ? PHE A 89 PHE A 93 B 2 GLU A 122 ? ARG A 127 ? GLU A 121 ARG A 126 B 3 LYS A 130 ? VAL A 131 ? LYS A 129 VAL A 130 C 1 ILE A 170 ? ARG A 172 ? ILE A 169 ARG A 171 C 2 GLN A 146 ? PRO A 150 ? GLN A 145 PRO A 149 C 3 ASN A 138 ? GLN A 143 ? ASN A 137 GLN A 142 C 4 ILE A 185 ? ILE A 188 ? ILE A 184 ILE A 187 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 17 ? O GLN A 16 N GLU A 14 ? N GLU A 13 A 2 3 N ILE A 11 ? N ILE A 10 O CYS A 66 ? O CYS A 65 A 3 4 N ARG A 65 ? N ARG A 64 O PHE A 80 ? O PHE A 79 B 1 2 N VAL A 93 ? N VAL A 92 O ILE A 126 ? O ILE A 125 B 2 3 N ARG A 127 ? N ARG A 126 O LYS A 130 ? O LYS A 129 C 1 2 O ILE A 170 ? O ILE A 169 N THR A 149 ? N THR A 148 C 2 3 O GLN A 146 ? O GLN A 145 N GLN A 143 ? N GLN A 142 C 3 4 N ILE A 140 ? N ILE A 139 O ARG A 186 ? O ARG A 185 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 194 ? 7 'BINDING SITE FOR RESIDUE SO4 A 194' AC2 Software A SO4 195 ? 6 'BINDING SITE FOR RESIDUE SO4 A 195' AC3 Software A SO4 196 ? 3 'BINDING SITE FOR RESIDUE SO4 A 196' AC4 Software A SO4 197 ? 3 'BINDING SITE FOR RESIDUE SO4 A 197' AC5 Software A SO4 198 ? 4 'BINDING SITE FOR RESIDUE SO4 A 198' AC6 Software A GOL 199 ? 5 'BINDING SITE FOR RESIDUE GOL A 199' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TYR A 36 ? TYR A 35 . ? 1_555 ? 2 AC1 7 HIS A 53 ? HIS A 52 . ? 3_564 ? 3 AC1 7 ASN A 71 ? ASN A 70 . ? 1_555 ? 4 AC1 7 HIS A 72 ? HIS A 71 . ? 1_555 ? 5 AC1 7 TYR A 75 ? TYR A 74 . ? 3_564 ? 6 AC1 7 LEU A 77 ? LEU A 76 . ? 3_564 ? 7 AC1 7 HOH H . ? HOH A 214 . ? 3_564 ? 8 AC2 6 ASN A 20 ? ASN A 19 . ? 1_555 ? 9 AC2 6 ILE A 21 ? ILE A 20 . ? 1_555 ? 10 AC2 6 SER A 22 ? SER A 21 . ? 1_555 ? 11 AC2 6 TYR A 23 ? TYR A 22 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 227 . ? 1_555 ? 13 AC2 6 HOH H . ? HOH A 261 . ? 1_555 ? 14 AC3 3 HIS A 59 ? HIS A 58 . ? 1_555 ? 15 AC3 3 ARG A 60 ? ARG A 59 . ? 1_555 ? 16 AC3 3 GLU A 61 ? GLU A 60 . ? 1_555 ? 17 AC4 3 CYS A 95 ? CYS A 94 . ? 1_555 ? 18 AC4 3 ASP A 96 ? ASP A 95 . ? 1_555 ? 19 AC4 3 HIS A 97 ? HIS A 96 . ? 1_555 ? 20 AC5 4 ARG A 107 ? ARG A 106 . ? 1_555 ? 21 AC5 4 ASN A 111 ? ASN A 110 . ? 1_555 ? 22 AC5 4 HOH H . ? HOH A 218 . ? 1_555 ? 23 AC5 4 HOH H . ? HOH A 240 . ? 1_555 ? 24 AC6 5 LYS A 85 ? LYS A 84 . ? 1_555 ? 25 AC6 5 TYR A 87 ? TYR A 86 . ? 1_555 ? 26 AC6 5 ARG A 186 ? ARG A 185 . ? 1_555 ? 27 AC6 5 LEU A 187 ? LEU A 186 . ? 1_555 ? 28 AC6 5 ASN A 192 ? ASN A 191 . ? 1_555 ? # _atom_sites.entry_id 3CEB _atom_sites.fract_transf_matrix[1][1] 0.006679 _atom_sites.fract_transf_matrix[1][2] 0.003856 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007712 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029377 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 TRP 3 2 2 TRP TRP A . n A 1 4 GLN 4 3 3 GLN GLN A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 PRO 6 5 5 PRO PRO A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 GLN 15 14 14 GLN GLN A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 ILE 21 20 20 ILE ILE A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 TYR 23 22 22 TYR TYR A . n A 1 24 HIS 24 23 23 HIS HIS A . n A 1 25 GLN 25 24 24 GLN GLN A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 MSE 39 38 38 MSE MSE A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 GLN 42 41 41 GLN GLN A . n A 1 43 PRO 43 42 42 PRO PRO A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 ASP 45 44 44 ASP ASP A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 HIS 53 52 52 HIS HIS A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 THR 58 57 57 THR THR A . n A 1 59 HIS 59 58 58 HIS HIS A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 CYS 66 65 65 CYS CYS A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 ASN 71 70 70 ASN ASN A . n A 1 72 HIS 72 71 71 HIS HIS A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 CYS 79 78 78 CYS CYS A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 PRO 81 80 80 PRO PRO A . n A 1 82 TYR 82 81 81 TYR TYR A . n A 1 83 GLN 83 82 82 GLN GLN A . n A 1 84 GLN 84 83 83 GLN GLN A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 LYS 91 90 90 LYS LYS A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 PHE 94 93 93 PHE PHE A . n A 1 95 CYS 95 94 94 CYS CYS A . n A 1 96 ASP 96 95 95 ASP ASP A . n A 1 97 HIS 97 96 96 HIS HIS A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 ASP 99 98 98 ASP ASP A . n A 1 100 TYR 100 99 99 TYR TYR A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 LLP 103 102 102 LLP LLP A . n A 1 104 PHE 104 103 103 PHE PHE A . n A 1 105 SER 105 104 104 SER SER A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 ASN 111 110 110 ASN ASN A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 CYS 120 119 119 CYS CYS A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 GLU 122 121 121 GLU GLU A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 MSE 124 123 123 MSE MSE A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 ARG 127 126 126 ARG ARG A . n A 1 128 GLN 128 127 127 GLN GLN A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 THR 132 131 131 THR THR A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 CYS 134 133 133 CYS CYS A . n A 1 135 SER 135 134 134 SER SER A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 GLY 137 136 136 GLY GLY A . n A 1 138 ASN 138 137 137 ASN ASN A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 PHE 141 140 140 PHE PHE A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 ASN 145 144 144 ASN ASN A . n A 1 146 GLN 146 145 145 GLN GLN A . n A 1 147 TRP 147 146 146 TRP TRP A . n A 1 148 ILE 148 147 147 ILE ILE A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 PRO 150 149 149 PRO PRO A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 LYS 152 151 151 LYS LYS A . n A 1 153 PRO 153 152 152 PRO PRO A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 GLY 157 156 156 GLY GLY A . n A 1 158 THR 158 157 157 THR THR A . n A 1 159 GLN 159 158 158 GLN GLN A . n A 1 160 ARG 160 159 159 ARG ARG A . n A 1 161 ALA 161 160 160 ALA ALA A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 LEU 163 162 162 LEU LEU A . n A 1 164 LEU 164 163 163 LEU LEU A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 GLN 166 165 165 GLN GLN A . n A 1 167 LYS 167 166 166 LYS LYS A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 ILE 169 168 168 ILE ILE A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 PHE 175 174 174 PHE PHE A . n A 1 176 PHE 176 175 175 PHE PHE A . n A 1 177 GLU 177 176 176 GLU GLU A . n A 1 178 ASP 178 177 177 ASP ASP A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 ALA 180 179 179 ALA ALA A . n A 1 181 GLN 181 180 180 GLN GLN A . n A 1 182 TYR 182 181 181 TYR TYR A . n A 1 183 GLU 183 182 182 GLU GLU A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 ILE 185 184 184 ILE ILE A . n A 1 186 ARG 186 185 185 ARG ARG A . n A 1 187 LEU 187 186 186 LEU LEU A . n A 1 188 ILE 188 187 187 ILE ILE A . n A 1 189 ASN 189 188 188 ASN ASN A . n A 1 190 ALA 190 189 189 ALA ALA A . n A 1 191 MSE 191 190 190 MSE MSE A . n A 1 192 ASN 192 191 191 ASN ASN A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 LEU 194 193 193 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 194 1 SO4 SO4 A . C 2 SO4 1 195 2 SO4 SO4 A . D 2 SO4 1 196 3 SO4 SO4 A . E 2 SO4 1 197 4 SO4 SO4 A . F 2 SO4 1 198 5 SO4 SO4 A . G 3 GOL 1 199 6 GOL GOL A . H 4 HOH 1 200 7 HOH HOH A . H 4 HOH 2 201 8 HOH HOH A . H 4 HOH 3 202 9 HOH HOH A . H 4 HOH 4 203 10 HOH HOH A . H 4 HOH 5 204 11 HOH HOH A . H 4 HOH 6 205 12 HOH HOH A . H 4 HOH 7 206 13 HOH HOH A . H 4 HOH 8 207 14 HOH HOH A . H 4 HOH 9 208 15 HOH HOH A . H 4 HOH 10 209 16 HOH HOH A . H 4 HOH 11 210 17 HOH HOH A . H 4 HOH 12 211 18 HOH HOH A . H 4 HOH 13 212 19 HOH HOH A . H 4 HOH 14 213 20 HOH HOH A . H 4 HOH 15 214 21 HOH HOH A . H 4 HOH 16 215 22 HOH HOH A . H 4 HOH 17 216 23 HOH HOH A . H 4 HOH 18 217 24 HOH HOH A . H 4 HOH 19 218 25 HOH HOH A . H 4 HOH 20 219 26 HOH HOH A . H 4 HOH 21 220 27 HOH HOH A . H 4 HOH 22 221 28 HOH HOH A . H 4 HOH 23 222 29 HOH HOH A . H 4 HOH 24 223 30 HOH HOH A . H 4 HOH 25 224 31 HOH HOH A . H 4 HOH 26 225 32 HOH HOH A . H 4 HOH 27 226 33 HOH HOH A . H 4 HOH 28 227 34 HOH HOH A . H 4 HOH 29 228 35 HOH HOH A . H 4 HOH 30 229 36 HOH HOH A . H 4 HOH 31 230 37 HOH HOH A . H 4 HOH 32 231 38 HOH HOH A . H 4 HOH 33 232 39 HOH HOH A . H 4 HOH 34 233 40 HOH HOH A . H 4 HOH 35 234 41 HOH HOH A . H 4 HOH 36 235 42 HOH HOH A . H 4 HOH 37 236 43 HOH HOH A . H 4 HOH 38 237 44 HOH HOH A . H 4 HOH 39 238 45 HOH HOH A . H 4 HOH 40 239 46 HOH HOH A . H 4 HOH 41 240 47 HOH HOH A . H 4 HOH 42 241 48 HOH HOH A . H 4 HOH 43 242 49 HOH HOH A . H 4 HOH 44 243 50 HOH HOH A . H 4 HOH 45 244 51 HOH HOH A . H 4 HOH 46 245 52 HOH HOH A . H 4 HOH 47 246 53 HOH HOH A . H 4 HOH 48 247 54 HOH HOH A . H 4 HOH 49 248 55 HOH HOH A . H 4 HOH 50 249 56 HOH HOH A . H 4 HOH 51 250 57 HOH HOH A . H 4 HOH 52 251 58 HOH HOH A . H 4 HOH 53 252 59 HOH HOH A . H 4 HOH 54 253 60 HOH HOH A . H 4 HOH 55 254 61 HOH HOH A . H 4 HOH 56 255 62 HOH HOH A . H 4 HOH 57 256 63 HOH HOH A . H 4 HOH 58 257 64 HOH HOH A . H 4 HOH 59 258 65 HOH HOH A . H 4 HOH 60 259 66 HOH HOH A . H 4 HOH 61 260 67 HOH HOH A . H 4 HOH 62 261 68 HOH HOH A . H 4 HOH 63 262 69 HOH HOH A . H 4 HOH 64 263 70 HOH HOH A . H 4 HOH 65 264 71 HOH HOH A . H 4 HOH 66 265 72 HOH HOH A . H 4 HOH 67 266 73 HOH HOH A . H 4 HOH 68 267 74 HOH HOH A . H 4 HOH 69 268 75 HOH HOH A . H 4 HOH 70 269 76 HOH HOH A . H 4 HOH 71 270 77 HOH HOH A . H 4 HOH 72 271 78 HOH HOH A . H 4 HOH 73 272 79 HOH HOH A . H 4 HOH 74 273 80 HOH HOH A . H 4 HOH 75 274 81 HOH HOH A . H 4 HOH 76 275 82 HOH HOH A . H 4 HOH 77 276 83 HOH HOH A . H 4 HOH 78 277 84 HOH HOH A . H 4 HOH 79 278 85 HOH HOH A . H 4 HOH 80 279 86 HOH HOH A . H 4 HOH 81 280 87 HOH HOH A . H 4 HOH 82 281 88 HOH HOH A . H 4 HOH 83 282 89 HOH HOH A . H 4 HOH 84 283 90 HOH HOH A . H 4 HOH 85 284 91 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 38 ? MET SELENOMETHIONINE 3 A LLP 103 A LLP 102 ? LYS ? 4 A MSE 124 A MSE 123 ? MET SELENOMETHIONINE 5 A MSE 191 A MSE 190 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -6.1985 74.4278 -3.7471 -0.1221 -0.0842 -0.1365 -0.0214 0.0297 -0.0199 3.1363 2.8719 3.4943 -0.4536 1.2684 -1.4198 -0.0687 0.0607 0.0080 -0.2035 -0.2115 0.0024 -0.0209 -0.0378 0.0136 'X-RAY DIFFRACTION' 2 ? refined -27.0265 68.8139 -0.4283 -0.1134 -0.1001 -0.0497 -0.0220 -0.0029 -0.0131 4.6799 3.4123 1.5653 1.2674 -0.7898 -0.1321 0.0103 -0.0919 0.0816 -0.0972 -0.2471 0.4382 0.0133 0.1375 -0.1184 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 83 ? A 0 A 82 'X-RAY DIFFRACTION' ? 2 2 A 84 A 194 ? A 83 A 193 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHARP . ? ? ? ? phasing ? ? ? 9 SHELXD . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3CEB _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 98 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 98 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 98 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 125.22 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.92 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 37 ? ? 79.23 -8.45 2 1 ASN A 70 ? ? -130.03 -156.24 3 1 GLU A 117 ? ? 51.67 -112.77 4 1 GLU A 121 ? ? -176.28 -173.23 5 1 THR A 131 ? ? -116.53 -105.25 6 1 ASN A 143 ? ? 61.31 -119.60 7 1 LYS A 151 ? ? -119.57 73.21 8 1 GLU A 183 ? ? -174.56 146.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 29 ? CE ? A LYS 30 CE 2 1 Y 1 A LYS 29 ? NZ ? A LYS 30 NZ 3 1 Y 1 A LYS 37 ? CG ? A LYS 38 CG 4 1 Y 1 A LYS 37 ? CD ? A LYS 38 CD 5 1 Y 1 A LYS 37 ? CE ? A LYS 38 CE 6 1 Y 1 A LYS 37 ? NZ ? A LYS 38 NZ 7 1 Y 1 A ARG 59 ? CG ? A ARG 60 CG 8 1 Y 1 A ARG 59 ? CD ? A ARG 60 CD 9 1 Y 1 A ARG 59 ? NE ? A ARG 60 NE 10 1 Y 1 A ARG 59 ? CZ ? A ARG 60 CZ 11 1 Y 1 A ARG 59 ? NH1 ? A ARG 60 NH1 12 1 Y 1 A ARG 59 ? NH2 ? A ARG 60 NH2 13 1 Y 1 A GLU 60 ? CD ? A GLU 61 CD 14 1 Y 1 A GLU 60 ? OE1 ? A GLU 61 OE1 15 1 Y 1 A GLU 60 ? OE2 ? A GLU 61 OE2 16 1 Y 1 A GLN 83 ? CD ? A GLN 84 CD 17 1 Y 1 A GLN 83 ? OE1 ? A GLN 84 OE1 18 1 Y 1 A GLN 83 ? NE2 ? A GLN 84 NE2 19 1 Y 1 A LYS 129 ? NZ ? A LYS 130 NZ 20 1 Y 1 A LYS 161 ? CE ? A LYS 162 CE 21 1 Y 1 A LYS 161 ? NZ ? A LYS 162 NZ 22 1 Y 1 A LYS 167 ? NZ ? A LYS 168 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #