HEADER METAL BINDING PROTEIN 05-MAR-08 3CGH TITLE CRYSTAL STRUCTURE OF A SUSD HOMOLOG (BT_3984) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-537; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482 / DSM 2079 / NCTC 10582 / E50; SOURCE 5 ATCC: 29148; SOURCE 6 GENE: NP_812895.1, BT_3984; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3CGH 1 REMARK SEQADV REVDAT 6 24-JUL-19 3CGH 1 REMARK LINK REVDAT 5 25-OCT-17 3CGH 1 REMARK REVDAT 4 13-JUL-11 3CGH 1 VERSN REVDAT 3 23-MAR-11 3CGH 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3CGH 1 VERSN REVDAT 1 18-MAR-08 3CGH 0 JRNL AUTH C.BAKOLITSA,Q.XU,C.L.RIFE,P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD, JRNL AUTH 2 D.CARLTON,C.CHEN,H.J.CHIU,T.CLAYTON,D.DAS,M.C.DELLER,L.DUAN, JRNL AUTH 3 K.ELLROTT,C.L.FARR,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK, JRNL AUTH 4 G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL, JRNL AUTH 5 S.S.KRISHNA,A.KUMAR,W.W.LAM,D.MARCIANO,D.MCMULLAN, JRNL AUTH 6 M.D.MILLER,A.T.MORSE,E.NIGOGHOSSIAN,A.NOPAKUN,L.OKACH, JRNL AUTH 7 C.PUCKETT,R.REYES,H.J.TIEN,C.B.TRAME,H.VAN DEN BEDEM, JRNL AUTH 8 D.WEEKES,K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON, JRNL AUTH 9 A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURE OF BT_3984, A MEMBER OF THE SUSD/RAGB FAMILY OF JRNL TITL 2 NUTRIENT-BINDING MOLECULES. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1274 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944222 JRNL DOI 10.1107/S1744309110032999 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 60025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 704 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4156 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2719 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5694 ; 1.521 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6655 ; 1.413 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 6.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;40.212 ;25.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;12.917 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4806 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 843 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2590 ; 0.774 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1048 ; 0.268 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4183 ; 1.289 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 2.237 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1496 ; 3.597 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9150 -52.1040 20.3700 REMARK 3 T TENSOR REMARK 3 T11: -0.0333 T22: -0.0276 REMARK 3 T33: -0.0482 T12: 0.0351 REMARK 3 T13: -0.0053 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.5402 L22: 0.4763 REMARK 3 L33: 0.4645 L12: -0.1535 REMARK 3 L13: -0.0047 L23: 0.1319 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: 0.0265 S13: 0.0087 REMARK 3 S21: -0.0958 S22: -0.0495 S23: -0.0043 REMARK 3 S31: -0.0414 S32: -0.0069 S33: -0.0138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. ACT IS MODELED BASED ON CRYSTALLIZATION CONDITIONS. REMARK 3 5. ZN IS MODELED BASED ON AN X-RAY FLOURESCENCE SCAN, ANOMALOUS REMARK 3 DIFFERENCE FOURIERS, AND COORDINATION GEOMETRY. REMARK 3 6. RESIDUE GLY 41 IS A RAMACHANDRAN OUTLIER, AND IS PRESENT IN REMARK 3 POOR DENSITY. REMARK 4 REMARK 4 3CGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97911, 0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.039 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NH4OAC, 30.0% PEG 4000, REMARK 280 0.1M CITRATE PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.89000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.89000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.32500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.89000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.32500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.89000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -125.27000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 23 REMARK 465 TYR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 ILE A 27 REMARK 465 ASN A 28 REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 GLN A 280 CD OE1 NE2 REMARK 470 LYS A 309 CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 409 CD CE NZ REMARK 470 LYS A 444 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 40 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 13.59 58.08 REMARK 500 VAL A 55 -81.59 -82.29 REMARK 500 LEU A 70 -75.32 -97.63 REMARK 500 SER A 81 31.31 -142.93 REMARK 500 ILE A 108 -88.99 -110.19 REMARK 500 TYR A 155 -74.80 -151.26 REMARK 500 ILE A 204 -61.55 -94.19 REMARK 500 SER A 266 -140.46 -150.96 REMARK 500 TRP A 460 126.65 -33.67 REMARK 500 GLN A 461 -22.09 88.98 REMARK 500 ASN A 509 39.64 -150.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 40 GLY A 41 34.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 284 NE2 REMARK 620 2 CYS A 289 SG 115.4 REMARK 620 3 GLU A 321 OE2 86.1 96.6 REMARK 620 4 HIS A 344 ND1 99.5 126.0 127.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 389990 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE CONSTRUCT CONTAINS RESIDUES 23-537 OF THE REMARK 999 TARGET SEQUENCE. DBREF 3CGH A 23 537 UNP Q8A0N7 Q8A0N7_BACTN 23 537 SEQADV 3CGH GLY A 0 UNP Q8A0N7 EXPRESSION TAG SEQRES 1 A 516 GLY ASN TYR GLU ASN ILE ASN SER ASN PRO TYR GLU ALA SEQRES 2 A 516 PRO ASP LEU SER ALA ASP GLY TYR ALA LEU GLY SER ALA SEQRES 3 A 516 MSE ASN ASN LEU ALA GLY CYS VAL VAL SER PRO ASP VAL SEQRES 4 A 516 ASN THR ALA GLN PHE THR ASP CYS LEU LEU GLY GLY PRO SEQRES 5 A 516 LEU GLY GLY TYR PHE ALA ASP SER ASN ALA GLY PHE THR SEQRES 6 A 516 GLU THR ILE SER ASN PHE ASN PRO LYS ASP ASP TRP SER SEQRES 7 A 516 ARG VAL PHE LEU LYS SER ASP LYS ILE ILE PRO THR LEU SEQRES 8 A 516 TYR SER ASN LEU THR GLN VAL LYS LEU VAL SER GLN ASN SEQRES 9 A 516 THR ASN ASP PRO VAL PRO TYR ALA ILE ALA GLN VAL ILE SEQRES 10 A 516 LYS VAL ALA ALA MSE HIS ARG VAL THR ASP ALA PHE GLY SEQRES 11 A 516 PRO ILE PRO TYR SER GLN ILE GLY ALA ASN GLY GLU ILE SEQRES 12 A 516 ALA THR PRO TYR ASP SER GLN GLU VAL THR TYR ASN THR SEQRES 13 A 516 PHE PHE ASP GLU LEU ASN ALA ALA ILE ALA THR LEU ASN SEQRES 14 A 516 GLU ASN SER ASN GLU GLN LEU VAL PRO THR ALA ASP TYR SEQRES 15 A 516 ILE TYR LYS GLY ASP VAL LYS LYS TRP ILE ARG PHE ALA SEQRES 16 A 516 ASN SER LEU LYS LEU ARG LEU ALA ILE ARG ILE ALA TYR SEQRES 17 A 516 ALA ASN PRO VAL LYS ALA GLN GLN MSE ALA GLU GLU ALA SEQRES 18 A 516 VAL ASN PRO ALA ASN GLY GLY VAL ILE GLU SER ASN ALA SEQRES 19 A 516 ASP ASN ALA THR TRP ASN TYR PHE GLU THR SER GLN ASN SEQRES 20 A 516 PRO ILE TYR VAL ALA THR ARG TYR ASN GLN VAL GLN THR SEQRES 21 A 516 SER ASP HIS GLY GLY VAL PRO CYS LEU THR GLY GLY ASP SEQRES 22 A 516 THR HIS ALA ALA ALA ASP ILE ILE CYS TYR MSE ASN GLY SEQRES 23 A 516 TYR LYS ASP ASN ARG ARG GLU LYS PHE PHE THR LYS SER SEQRES 24 A 516 GLU TRP ALA GLY GLN ASP TYR VAL GLY MSE ARG ARG GLY SEQRES 25 A 516 ILE VAL ILE PRO GLU LEU LYS THR THR GLY HIS LYS TYR SEQRES 26 A 516 SER GLY VAL ASN ILE ALA PRO THR SER PRO LEU TYR TRP SEQRES 27 A 516 MSE ASN ALA ALA GLU VAL ALA PHE LEU ARG ALA GLU GLY SEQRES 28 A 516 GLN ALA VAL PHE ASN PHE SER MSE GLY GLY THR ALA GLU SEQRES 29 A 516 SER PHE TYR ASN GLN GLY ILE ARG LEU SER PHE GLU GLN SEQRES 30 A 516 TRP GLY ALA ASP GLY VAL GLU ASP TYR LEU LYS ASP ASP SEQRES 31 A 516 VAL ASN LYS PRO THR ALA TYR THR ASP PRO ALA GLY THR SEQRES 32 A 516 ASN THR TYR GLN ASN ALA LEU SER ASN ILE THR ILE LYS SEQRES 33 A 516 TRP ASN ASP SER ALA ASP LYS GLU GLU LYS GLN GLU ARG SEQRES 34 A 516 ILE ILE VAL GLN LYS TRP ILE ALA ASN TRP GLN LEU GLY SEQRES 35 A 516 ASN GLU ALA TRP ALA ASP PHE ARG ARG THR GLY TYR PRO SEQRES 36 A 516 LYS LEU ILE PRO VAL LYS GLU ASN LYS SER GLY GLY VAL SEQRES 37 A 516 VAL ASP SER GLU LYS GLY ALA ARG ARG MSE PRO TYR PRO SEQRES 38 A 516 LEU ASP GLU PHE VAL SER ASN LYS ALA ASN VAL GLU TYR SEQRES 39 A 516 ALA ILE ALA ASN TYR LEU HIS GLY ALA ASP ASN MSE ALA SEQRES 40 A 516 THR ASP VAL TRP TRP ALA SER LYS LYS MODRES 3CGH MSE A 48 MET SELENOMETHIONINE MODRES 3CGH MSE A 143 MET SELENOMETHIONINE MODRES 3CGH MSE A 238 MET SELENOMETHIONINE MODRES 3CGH MSE A 305 MET SELENOMETHIONINE MODRES 3CGH MSE A 330 MET SELENOMETHIONINE MODRES 3CGH MSE A 360 MET SELENOMETHIONINE MODRES 3CGH MSE A 380 MET SELENOMETHIONINE MODRES 3CGH MSE A 499 MET SELENOMETHIONINE MODRES 3CGH MSE A 527 MET SELENOMETHIONINE HET MSE A 48 8 HET MSE A 143 8 HET MSE A 238 8 HET MSE A 305 8 HET MSE A 330 8 HET MSE A 360 8 HET MSE A 380 8 HET MSE A 499 8 HET MSE A 527 8 HET ZN A 600 1 HET ACT A 1 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *704(H2 O) HELIX 1 1 ASP A 40 GLY A 53 1 14 HELIX 2 2 ASP A 59 CYS A 68 1 10 HELIX 3 3 LEU A 70 GLY A 75 1 6 HELIX 4 4 LYS A 95 ARG A 100 1 6 HELIX 5 5 ARG A 100 SER A 105 1 6 HELIX 6 6 ILE A 108 THR A 126 1 19 HELIX 7 7 PRO A 129 GLY A 151 1 23 HELIX 8 8 SER A 170 ASN A 192 1 23 HELIX 9 9 VAL A 198 ASP A 202 5 5 HELIX 10 10 ASP A 208 ILE A 227 1 20 HELIX 11 11 ASN A 231 ASN A 244 1 14 HELIX 12 12 PRO A 245 GLY A 248 5 4 HELIX 13 13 SER A 253 ASN A 257 5 5 HELIX 14 14 ASN A 268 TYR A 276 1 9 HELIX 15 15 GLN A 280 HIS A 284 5 5 HELIX 16 16 ALA A 298 TYR A 308 1 11 HELIX 17 17 ARG A 312 PHE A 317 1 6 HELIX 18 18 THR A 342 TYR A 346 5 5 HELIX 19 19 ASN A 361 ASN A 377 1 17 HELIX 20 20 THR A 383 GLY A 400 1 18 HELIX 21 21 GLY A 403 LYS A 409 1 7 HELIX 22 22 ASP A 443 ASN A 459 1 17 HELIX 23 23 LEU A 462 GLY A 474 1 13 HELIX 24 24 ASP A 504 ASN A 509 1 6 HELIX 25 25 ASN A 509 TYR A 520 1 12 SHEET 1 A 2 PHE A 78 ASP A 80 0 SHEET 2 A 2 THR A 295 ALA A 297 -1 O HIS A 296 N ALA A 79 SHEET 1 B 2 ALA A 258 TRP A 260 0 SHEET 2 B 2 LEU A 357 MSE A 360 -1 O LEU A 357 N TRP A 260 LINK C ALA A 47 N MSE A 48 1555 1555 1.34 LINK C MSE A 48 N ASN A 49 1555 1555 1.34 LINK C ALA A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N HIS A 144 1555 1555 1.33 LINK C GLN A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N ALA A 239 1555 1555 1.33 LINK C TYR A 304 N MSE A 305 1555 1555 1.32 LINK C MSE A 305 N ASN A 306 1555 1555 1.34 LINK C GLY A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N ARG A 331 1555 1555 1.33 LINK C TRP A 359 N MSE A 360 1555 1555 1.33 LINK C MSE A 360 N ASN A 361 1555 1555 1.32 LINK C SER A 379 N MSE A 380 1555 1555 1.33 LINK C MSE A 380 N GLY A 381 1555 1555 1.32 LINK C ARG A 498 N MSE A 499 1555 1555 1.33 LINK C MSE A 499 N PRO A 500 1555 1555 1.33 LINK C ASN A 526 N MSE A 527 1555 1555 1.34 LINK C MSE A 527 N ALA A 528 1555 1555 1.33 LINK NE2 HIS A 284 ZN ZN A 600 1555 1555 2.36 LINK SG CYS A 289 ZN ZN A 600 1555 1555 2.39 LINK OE2 GLU A 321 ZN ZN A 600 1555 1555 2.01 LINK ND1 HIS A 344 ZN ZN A 600 1555 1555 2.27 CISPEP 1 TYR A 475 PRO A 476 0 -5.96 SITE 1 AC1 4 HIS A 284 CYS A 289 GLU A 321 HIS A 344 SITE 1 AC2 5 TYR A 132 GLN A 136 LYS A 139 HOH A 947 SITE 2 AC2 5 HOH A1106 CRYST1 49.780 125.270 174.650 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005726 0.00000