HEADER ISOMERASE 11-MAR-08 3CIN TITLE CRYSTAL STRUCTURE OF A MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED TITLE 2 PROTEIN (TM_1419) FROM THERMOTOGA MARITIMA MSB8 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 5.5.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 ATCC: 43589; SOURCE 6 GENE: TM1419, TM_1419; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MH1 KEYWDS MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 20-SEP-23 3CIN 1 REMARK REVDAT 7 01-FEB-23 3CIN 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3CIN 1 REMARK REVDAT 5 25-OCT-17 3CIN 1 REMARK REVDAT 4 13-JUL-11 3CIN 1 VERSN REVDAT 3 28-JUL-10 3CIN 1 TITLE KEYWDS REVDAT 2 24-FEB-09 3CIN 1 VERSN REVDAT 1 25-MAR-08 3CIN 0 SPRSDE 25-MAR-08 3CIN 1VJP JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF MYO-INOSITOL-1-PHOSPHATE JRNL TITL 2 SYNTHASE-RELATED PROTEIN (TM1419) FROM THERMOTOGA MARITIMA JRNL TITL 3 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 43592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 2.65000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3144 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2103 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4283 ; 1.711 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5168 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 5.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;36.215 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;14.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.122 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3470 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 624 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2144 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1561 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1623 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.333 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2079 ; 2.552 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 782 ; 0.669 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3122 ; 3.261 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 5.256 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1160 ; 7.257 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2655 18.7264 40.8720 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: -0.1562 REMARK 3 T33: -0.0989 T12: -0.0183 REMARK 3 T13: 0.0048 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.6217 L22: 0.5168 REMARK 3 L33: 1.0463 L12: -0.4263 REMARK 3 L13: 0.7978 L23: -0.4268 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.0218 S13: 0.0177 REMARK 3 S21: -0.0027 S22: 0.0433 S23: 0.0166 REMARK 3 S31: 0.0312 S32: -0.0730 S33: -0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. RESIDUE ASP 208 IS A RAMACHANDRAN OUTLIER, HOWEVER, REMARK 3 THE ELECTRON DENSITY IS UNAMBIGUOUS FOR THIS RESIDUE. REMARK 3 3. CHLORINE ATOMS WERE MODELED SINCE THEY REFINED TO REMARK 3 A BETTER B-FACTOR AGREEMENT WITH SURROUNDING RESIDUES. REMARK 3 4. THE NICOTINAMIDE RING WAS MODELED IN THE SAME REMARK 3 ORIENTATION AS OBSERVED IN HOMOLOGS, DESPITE RESIDUAL REMARK 3 FO-FC DENSITY INDICATION AT LEAST PARTIAL OCCUPANCY OF REMARK 3 THE ORIENTATION ROTATED BY 180 DEGREES. REMARK 3 5. MAGNESIUM WAS MODELED BASED ON COORDINATION GEOMETRY REMARK 3 AND ELECTRON DENSITY PEAK HEIGHT. REMARK 3 6. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 3CIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.135 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GR0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MGCL2, 40.0% PEG 400, REMARK 280 0.1M CITRATE PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.47500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.50650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.47500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.50650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.47500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.50650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.47500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.50650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A TETRAMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.30400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 69.30400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 117.01300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.01300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 NZ REMARK 470 LYS A 62 CE NZ REMARK 470 LYS A 117 CD CE NZ REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 173 CD CE NZ REMARK 470 LYS A 232 CE NZ REMARK 470 LYS A 257 CD CE NZ REMARK 470 LYS A 261 CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 25 O LYS A 25 3556 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 297 CB GLU A 297 CG -0.136 REMARK 500 GLU A 307 CB GLU A 307 CG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 44.27 -77.75 REMARK 500 ALA A 36 -125.10 42.59 REMARK 500 LEU A 89 -127.91 39.58 REMARK 500 LEU A 89 -129.17 40.37 REMARK 500 ILE A 187 -62.36 -126.72 REMARK 500 ASP A 208 108.35 76.83 REMARK 500 SER A 300 -154.43 -108.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 386 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 354 O REMARK 620 2 PRO A 356 O 91.2 REMARK 620 3 GLU A 359 O 102.4 86.5 REMARK 620 4 HOH A 401 O 82.5 173.4 92.8 REMARK 620 5 HOH A 402 O 162.3 106.4 81.0 79.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283279 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHH. DBREF 3CIN A 1 382 UNP Q9X1D6 Q9X1D6_THEMA 1 382 SEQADV 3CIN MET A -11 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN GLY A -10 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN SER A -9 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN ASP A -8 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN LYS A -7 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN ILE A -6 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN HIS A -5 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN HIS A -4 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN HIS A -3 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN HIS A -2 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN HIS A -1 UNP Q9X1D6 EXPRESSION TAG SEQADV 3CIN HIS A 0 UNP Q9X1D6 EXPRESSION TAG SEQRES 1 A 394 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 394 VAL LYS VAL LEU ILE LEU GLY GLN GLY TYR VAL ALA SER SEQRES 3 A 394 THR PHE VAL ALA GLY LEU GLU LYS LEU ARG LYS GLY GLU SEQRES 4 A 394 ILE GLU PRO TYR GLY VAL PRO LEU ALA ARG GLU LEU PRO SEQRES 5 A 394 ILE GLY PHE GLU ASP ILE LYS ILE VAL GLY SER TYR ASP SEQRES 6 A 394 VAL ASP ARG ALA LYS ILE GLY LYS LYS LEU SER GLU VAL SEQRES 7 A 394 VAL LYS GLN TYR TRP ASN ASP VAL ASP SER LEU THR SER SEQRES 8 A 394 ASP PRO GLU ILE ARG LYS GLY VAL HIS LEU GLY SER VAL SEQRES 9 A 394 ARG ASN LEU PRO ILE GLU ALA GLU GLY LEU GLU ASP SER SEQRES 10 A 394 MET THR LEU LYS GLU ALA VAL ASP THR LEU VAL LYS GLU SEQRES 11 A 394 TRP THR GLU LEU ASP PRO ASP VAL ILE VAL ASN THR CYS SEQRES 12 A 394 THR THR GLU ALA PHE VAL PRO PHE GLY ASN LYS GLU ASP SEQRES 13 A 394 LEU LEU LYS ALA ILE GLU ASN ASN ASP LYS GLU ARG LEU SEQRES 14 A 394 THR ALA THR GLN VAL TYR ALA TYR ALA ALA ALA LEU TYR SEQRES 15 A 394 ALA ASN LYS ARG GLY GLY ALA ALA PHE VAL ASN VAL ILE SEQRES 16 A 394 PRO THR PHE ILE ALA ASN ASP PRO ALA PHE VAL GLU LEU SEQRES 17 A 394 ALA LYS GLU ASN ASN LEU VAL VAL PHE GLY ASP ASP GLY SEQRES 18 A 394 ALA THR GLY ALA THR PRO PHE THR ALA ASP VAL LEU SER SEQRES 19 A 394 HIS LEU ALA GLN ARG ASN ARG TYR VAL LYS ASP VAL ALA SEQRES 20 A 394 GLN PHE ASN ILE GLY GLY ASN MET ASP PHE LEU ALA LEU SEQRES 21 A 394 THR ASP ASP GLY LYS ASN LYS SER LYS GLU PHE THR LYS SEQRES 22 A 394 SER SER ILE VAL LYS ASP ILE LEU GLY TYR ASP ALA PRO SEQRES 23 A 394 HIS TYR ILE LYS PRO THR GLY TYR LEU GLU PRO LEU GLY SEQRES 24 A 394 ASP LYS LYS PHE ILE ALA ILE HIS ILE GLU TYR VAL SER SEQRES 25 A 394 PHE ASN GLY ALA THR ASP GLU LEU MET ILE ASN GLY ARG SEQRES 26 A 394 ILE ASN ASP SER PRO ALA LEU GLY GLY LEU LEU VAL ASP SEQRES 27 A 394 LEU VAL ARG LEU GLY LYS ILE ALA LEU ASP ARG LYS GLU SEQRES 28 A 394 PHE GLY THR VAL TYR PRO VAL ASN ALA PHE TYR MET LYS SEQRES 29 A 394 ASN PRO GLY PRO ALA GLU GLU LYS ASN ILE PRO ARG ILE SEQRES 30 A 394 ILE ALA TYR GLU LYS MET ARG ILE TRP ALA GLY LEU LYS SEQRES 31 A 394 PRO LYS TRP LEU HET CL A 383 1 HET CL A 384 1 HET CL A 385 1 HET MG A 386 1 HET NAD A 400 44 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 CL 3(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 NAD C21 H27 N7 O14 P2 FORMUL 7 HOH *233(H2 O) HELIX 1 1 GLY A 10 LYS A 25 1 16 HELIX 2 2 GLY A 42 GLU A 44 5 3 HELIX 3 3 LYS A 62 TRP A 71 1 10 HELIX 4 4 GLY A 101 SER A 105 5 5 HELIX 5 5 THR A 107 ASP A 123 1 17 HELIX 6 6 ASN A 141 ASN A 151 1 11 HELIX 7 7 THR A 158 GLY A 175 1 18 HELIX 8 8 ASP A 190 ASN A 200 1 11 HELIX 9 9 GLY A 212 ARG A 227 1 16 HELIX 10 10 ASN A 242 ALA A 247 5 6 HELIX 11 11 THR A 249 LYS A 261 1 13 HELIX 12 12 SER A 263 GLY A 270 1 8 HELIX 13 13 GLU A 284 GLY A 287 5 4 HELIX 14 14 PHE A 301 GLY A 303 5 3 HELIX 15 15 ASP A 316 ARG A 337 1 22 HELIX 16 16 VAL A 343 MET A 351 1 9 HELIX 17 17 PRO A 363 ALA A 375 1 13 SHEET 1 A 7 ARG A 84 LYS A 85 0 SHEET 2 A 7 ILE A 46 ASP A 53 1 N SER A 51 O ARG A 84 SHEET 3 A 7 VAL A 2 LEU A 7 1 N VAL A 4 O LYS A 47 SHEET 4 A 7 VAL A 126 ASN A 129 1 O VAL A 128 N LEU A 7 SHEET 5 A 7 ALA A 177 ASN A 181 1 O VAL A 180 N ILE A 127 SHEET 6 A 7 LEU A 202 PHE A 205 1 O PHE A 205 N ASN A 181 SHEET 7 A 7 GLY A 341 THR A 342 1 O GLY A 341 N VAL A 204 SHEET 1 B 3 HIS A 275 TYR A 276 0 SHEET 2 B 3 TYR A 230 GLY A 240 1 N GLN A 236 O TYR A 276 SHEET 3 B 3 GLY A 281 TYR A 282 1 O GLY A 281 N GLY A 240 SHEET 1 C 4 HIS A 275 TYR A 276 0 SHEET 2 C 4 TYR A 230 GLY A 240 1 N GLN A 236 O TYR A 276 SHEET 3 C 4 LYS A 289 VAL A 299 -1 O VAL A 299 N TYR A 230 SHEET 4 C 4 THR A 305 ASN A 315 -1 O LEU A 308 N ILE A 296 LINK O PRO A 354 MG MG A 386 1555 1555 2.35 LINK O PRO A 356 MG MG A 386 1555 1555 2.50 LINK O GLU A 359 MG MG A 386 1555 1555 2.28 LINK MG MG A 386 O HOH A 401 1555 1555 2.39 LINK MG MG A 386 O HOH A 402 1555 1555 2.33 CISPEP 1 GLY A 206 ASP A 207 0 -4.18 CISPEP 2 GLY A 355 PRO A 356 0 3.19 SITE 1 AC1 3 GLY A 212 ARG A 229 HOH A 506 SITE 1 AC2 5 ALA A 218 ASP A 219 SER A 222 PRO A 363 SITE 2 AC2 5 ARG A 364 SITE 1 AC3 4 ALA A 213 ASN A 238 LYS A 290 HOH A 433 SITE 1 AC4 6 ASN A 189 PRO A 354 PRO A 356 GLU A 359 SITE 2 AC4 6 HOH A 401 HOH A 402 SITE 1 AC5 26 GLY A 8 GLN A 9 GLY A 10 TYR A 11 SITE 2 AC5 26 ASP A 53 LYS A 58 SER A 91 THR A 130 SITE 3 AC5 26 CYS A 131 THR A 132 THR A 133 ALA A 159 SITE 4 AC5 26 TYR A 163 ILE A 183 ASP A 208 THR A 211 SITE 5 AC5 26 MET A 243 ASP A 244 ASP A 316 LEU A 320 SITE 6 AC5 26 HOH A 411 HOH A 416 HOH A 421 HOH A 426 SITE 7 AC5 26 HOH A 474 HOH A 563 CRYST1 69.304 104.950 117.013 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008546 0.00000