HEADER STRUCTURAL PROTEIN/HYDROLASE 12-MAR-08 3CJC TITLE ACTIN DIMER CROSS-LINKED BY V. CHOLERAE MARTX TOXIN AND COMPLEXED WITH TITLE 2 DNASE I AND GELSOLIN-SEGMENT 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEOXYRIBONUCLEASE-1; COMPND 7 CHAIN: D; COMPND 8 SYNONYM: DEOXYRIBONUCLEASE I, DNASE I; COMPND 9 EC: 3.1.21.1; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GELSOLIN; COMPND 12 CHAIN: G; COMPND 13 FRAGMENT: SEGMENT 1; COMPND 14 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR, ADF, BREVIN, AGEL; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 OTHER_DETAILS: SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 OTHER_DETAILS: PANCREATIC; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: GSN; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CROSS-LINKED DIMER, ATP-BINDING, CYTOSKELETON, METHYLATION, MUSCLE KEYWDS 2 PROTEIN, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, STRUCTURAL PROTEIN, KEYWDS 3 ACTIN-BINDING, APOPTOSIS, ENDONUCLEASE, GLYCOPROTEIN, HYDROLASE, KEYWDS 4 NUCLEASE, NUCLEUS, SECRETED, ACTIN CAPPING, ALTERNATIVE INITIATION, KEYWDS 5 AMYLOID, DISEASE MUTATION, STRUCTURAL PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.R.SAWAYA,D.S.KUDRYASHOV,I.PASHKOV,E.REISLER,T.O.YEATES REVDAT 6 29-JUL-20 3CJC 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 25-OCT-17 3CJC 1 REMARK REVDAT 4 13-JUL-11 3CJC 1 VERSN REVDAT 3 23-JUN-09 3CJC 1 JRNL REVDAT 2 24-FEB-09 3CJC 1 VERSN REVDAT 1 25-MAR-08 3CJC 0 JRNL AUTH D.S.KUDRYASHOV,Z.A.DURER,A.J.YTTERBERG,M.R.SAWAYA,I.PASHKOV, JRNL AUTH 2 K.PROCHAZKOVA,T.O.YEATES,R.R.LOO,J.A.LOO,K.J.SATCHELL, JRNL AUTH 3 E.REISLER JRNL TITL CONNECTING ACTIN MONOMERS BY ISO-PEPTIDE BOND IS A TOXICITY JRNL TITL 2 MECHANISM OF THE VIBRIO CHOLERAE MARTX TOXIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 18537 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19015515 JRNL DOI 10.1073/PNAS.0808082105 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.3 REMARK 3 NUMBER OF REFLECTIONS : 8450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.77000 REMARK 3 B22 (A**2) : 6.73000 REMARK 3 B33 (A**2) : 7.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.617 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 93.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6159 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4082 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8372 ; 0.928 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9931 ; 0.780 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 751 ; 2.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;26.615 ;24.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1007 ;11.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ; 9.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 928 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6808 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1252 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3753 ; 1.103 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1526 ; 0.050 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6063 ; 1.587 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2406 ; 0.323 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2309 ; 0.567 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9050 37.9040 -5.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: -0.1606 REMARK 3 T33: -0.2401 T12: 0.0021 REMARK 3 T13: -0.0018 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 0.5605 L22: 1.0272 REMARK 3 L33: 0.4917 L12: -0.3393 REMARK 3 L13: 0.1322 L23: 0.1281 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.0479 S13: 0.0470 REMARK 3 S21: 0.0318 S22: -0.0318 S23: -0.1274 REMARK 3 S31: 0.0521 S32: 0.0355 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 260 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7754 -3.7914 -19.2784 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: -0.3667 REMARK 3 T33: -0.2682 T12: -0.0265 REMARK 3 T13: -0.0135 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 3.7029 L22: 0.8785 REMARK 3 L33: 3.0652 L12: -0.3763 REMARK 3 L13: -0.3273 L23: -0.1160 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.1458 S13: 0.0265 REMARK 3 S21: -0.0355 S22: -0.0346 S23: 0.0663 REMARK 3 S31: -0.0287 S32: -0.1009 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 125 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0319 67.7920 -3.3341 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: -0.3065 REMARK 3 T33: 0.0184 T12: -0.0835 REMARK 3 T13: 0.1071 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.4750 L22: 1.5101 REMARK 3 L33: 0.5588 L12: 0.1081 REMARK 3 L13: 0.6509 L23: 0.6517 REMARK 3 S TENSOR REMARK 3 S11: 0.0964 S12: -0.1666 S13: 0.4189 REMARK 3 S21: -0.1374 S22: 0.3237 S23: -0.8476 REMARK 3 S31: -0.4237 S32: 0.3738 S33: -0.4201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A PEPTIDE CROSS-LINK IS FORMED BY THE REMARK 3 TOXIN BETWEEN LYS50 AND GLU270 OF NEIGHBORING ACTIN MOLECULES. REMARK 3 THE CROSS-LINK IS NOT MODELED IN THE COORDINATE SET DUE TO REMARK 3 DISORDER. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 ELLIPSOIDAL TRUNCATION AND ANISOTROPIC SCALE FACTORS HAVE BEEN REMARK 3 APPLIED TO THE STRUCTURE FACTORS AND USED IN REFINEMENT. THE REMARK 3 ELLIPSOID HAS PRINCIPLE AXES OF 5.8, 3.9, AND 3.9 RECIPROCAL REMARK 3 ANGSTROMS ALONG A*, B*, AND C*, RESPECTIVELY. THE SUBMITTED REMARK 3 STRUCTURE FACTOR ARCHIVE CONTAINS THE TRUNCATED/SCALED STRUCTURE REMARK 3 FACTORS AND THE ORIGINAL, UNMODIFIED INTENSITIES. REMARK 4 REMARK 4 3CJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12337 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.20700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)SO4, 0.1 M BIS-TRIS, 0.1 M REMARK 280 NACL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.65150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.28300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.65150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, G, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 CYS A 0 REMARK 465 LYS A 373 REMARK 465 CYS A 374 REMARK 465 PHE A 375 REMARK 465 GLU D 102 REMARK 465 SER D 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -60.90 -98.29 REMARK 500 LEU A 110 53.55 -104.33 REMARK 500 ALA A 181 -157.33 -160.46 REMARK 500 ASP A 222 70.80 57.52 REMARK 500 GLU A 253 -15.01 -47.51 REMARK 500 GLU A 270 60.87 -106.18 REMARK 500 LYS A 284 30.44 -93.10 REMARK 500 ASN A 296 62.72 -104.26 REMARK 500 ALA A 331 87.74 -151.12 REMARK 500 GLU D 39 38.71 73.61 REMARK 500 ARG D 41 72.56 -101.61 REMARK 500 ASN D 61 41.10 -105.96 REMARK 500 TYR D 76 83.04 -151.73 REMARK 500 SER D 122 33.87 -96.23 REMARK 500 ASP D 139 31.44 -96.03 REMARK 500 LYS D 157 -67.25 -93.44 REMARK 500 ALA D 171 53.75 -102.60 REMARK 500 CYS D 173 -137.28 60.11 REMARK 500 THR D 202 44.62 -99.12 REMARK 500 ALA D 230 96.24 -69.96 REMARK 500 PRO D 232 -168.32 -65.89 REMARK 500 PHE G 101 53.80 -111.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 403 O1B REMARK 620 2 ATP A 403 O2G 63.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 127 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 41 O REMARK 620 2 ASP G 42 OD2 69.6 REMARK 620 3 GLU G 73 OE1 76.9 65.4 REMARK 620 4 VAL G 121 O 134.8 72.6 108.6 REMARK 620 5 HOH G 128 O 132.1 130.1 76.5 91.6 REMARK 620 6 HOH G 129 O 65.8 124.9 129.3 121.9 103.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CJB RELATED DB: PDB DBREF 3CJC A -1 375 UNP P68135 ACTS_RABIT 1 377 DBREF 3CJC D 1 260 UNP P00639 DNAS1_BOVIN 23 282 DBREF 3CJC G 1 125 UNP P06396 GELS_HUMAN 52 176 SEQRES 1 A 377 MET CYS ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP SEQRES 2 A 377 ASN GLY SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP SEQRES 3 A 377 ASP ALA PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG SEQRES 4 A 377 PRO ARG HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS SEQRES 5 A 377 ASP SER TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY SEQRES 6 A 377 ILE LEU THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE SEQRES 7 A 377 THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR SEQRES 8 A 377 PHE TYR ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO SEQRES 9 A 377 THR LEU LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN SEQRES 10 A 377 ARG GLU LYS MET THR GLN ILE MET PHE GLU THR PHE ASN SEQRES 11 A 377 VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER SEQRES 12 A 377 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 A 377 SER GLY ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU SEQRES 14 A 377 GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU SEQRES 15 A 377 ALA GLY ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SEQRES 16 A 377 THR GLU ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG SEQRES 17 A 377 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL SEQRES 18 A 377 ALA LEU ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SEQRES 19 A 377 SER SER SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY SEQRES 20 A 377 GLN VAL ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO SEQRES 21 A 377 GLU THR LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER SEQRES 22 A 377 ALA GLY ILE HIS GLU THR THR TYR ASN SER ILE MET LYS SEQRES 23 A 377 CYS ASP ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN SEQRES 24 A 377 VAL MET SER GLY GLY THR THR MET TYR PRO GLY ILE ALA SEQRES 25 A 377 ASP ARG MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SEQRES 26 A 377 THR MET LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS SEQRES 27 A 377 TYR SER VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SEQRES 28 A 377 SER THR PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR SEQRES 29 A 377 ASP GLU ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 D 260 LEU LYS ILE ALA ALA PHE ASN ILE ARG THR PHE GLY GLU SEQRES 2 D 260 THR LYS MET SER ASN ALA THR LEU ALA SER TYR ILE VAL SEQRES 3 D 260 ARG ILE VAL ARG ARG TYR ASP ILE VAL LEU ILE GLN GLU SEQRES 4 D 260 VAL ARG ASP SER HIS LEU VAL ALA VAL GLY LYS LEU LEU SEQRES 5 D 260 ASP TYR LEU ASN GLN ASP ASP PRO ASN THR TYR HIS TYR SEQRES 6 D 260 VAL VAL SER GLU PRO LEU GLY ARG ASN SER TYR LYS GLU SEQRES 7 D 260 ARG TYR LEU PHE LEU PHE ARG PRO ASN LYS VAL SER VAL SEQRES 8 D 260 LEU ASP THR TYR GLN TYR ASP ASP GLY CYS GLU SER CYS SEQRES 9 D 260 GLY ASN ASP SER PHE SER ARG GLU PRO ALA VAL VAL LYS SEQRES 10 D 260 PHE SER SER HIS SER THR LYS VAL LYS GLU PHE ALA ILE SEQRES 11 D 260 VAL ALA LEU HIS SER ALA PRO SER ASP ALA VAL ALA GLU SEQRES 12 D 260 ILE ASN SER LEU TYR ASP VAL TYR LEU ASP VAL GLN GLN SEQRES 13 D 260 LYS TRP HIS LEU ASN ASP VAL MET LEU MET GLY ASP PHE SEQRES 14 D 260 ASN ALA ASP CYS SER TYR VAL THR SER SER GLN TRP SER SEQRES 15 D 260 SER ILE ARG LEU ARG THR SER SER THR PHE GLN TRP LEU SEQRES 16 D 260 ILE PRO ASP SER ALA ASP THR THR ALA THR SER THR ASN SEQRES 17 D 260 CYS ALA TYR ASP ARG ILE VAL VAL ALA GLY SER LEU LEU SEQRES 18 D 260 GLN SER SER VAL VAL PRO GLY SER ALA ALA PRO PHE ASP SEQRES 19 D 260 PHE GLN ALA ALA TYR GLY LEU SER ASN GLU MET ALA LEU SEQRES 20 D 260 ALA ILE SER ASP HIS TYR PRO VAL GLU VAL THR LEU THR SEQRES 1 G 125 MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA GLY LYS SEQRES 2 G 125 GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS PHE ASP SEQRES 3 G 125 LEU VAL PRO VAL PRO THR ASN LEU TYR GLY ASP PHE PHE SEQRES 4 G 125 THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL GLN LEU SEQRES 5 G 125 ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR TRP LEU SEQRES 6 G 125 GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA ALA ALA SEQRES 7 G 125 ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN GLY ARG SEQRES 8 G 125 ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SER ALA SEQRES 9 G 125 THR PHE LEU GLY TYR PHE LYS SER GLY LEU LYS TYR LYS SEQRES 10 G 125 LYS GLY GLY VAL ALA SER GLY PHE MODRES 3CJC ASN D 18 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET CA A 401 1 HET SO4 A 402 5 HET ATP A 403 31 HET SO4 D 272 5 HET SO4 D 273 5 HET SO4 D 274 5 HET SO4 D 275 5 HET SO4 G 126 5 HET CA G 127 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 CA 2(CA 2+) FORMUL 6 SO4 6(O4 S 2-) FORMUL 7 ATP C10 H16 N5 O13 P3 FORMUL 14 HOH *2(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 TYR A 91 1 14 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 GLY A 197 1 17 HELIX 8 8 THR A 202 GLU A 207 1 6 HELIX 9 9 GLU A 207 CYS A 217 1 11 HELIX 10 10 ASP A 222 ALA A 231 1 10 HELIX 11 11 ASN A 252 CYS A 257 1 6 HELIX 12 12 PRO A 258 PHE A 262 5 5 HELIX 13 13 GLN A 263 GLY A 268 5 6 HELIX 14 14 GLY A 273 LYS A 284 1 12 HELIX 15 15 ASP A 286 ASP A 288 5 3 HELIX 16 16 ILE A 289 ASN A 296 1 8 HELIX 17 17 GLY A 301 MET A 305 5 5 HELIX 18 18 GLY A 308 ALA A 321 1 14 HELIX 19 19 TYR A 337 LEU A 349 1 13 HELIX 20 20 SER A 350 MET A 355 5 6 HELIX 21 21 THR A 358 GLY A 366 1 9 HELIX 22 22 PRO A 367 ARG A 372 5 6 HELIX 23 23 GLY D 12 ASN D 18 1 7 HELIX 24 24 ASN D 18 ARG D 30 1 13 HELIX 25 25 LEU D 45 ASN D 56 1 12 HELIX 26 26 ASP D 139 SER D 146 1 8 HELIX 27 27 SER D 146 TRP D 158 1 13 HELIX 28 28 THR D 177 SER D 182 5 6 HELIX 29 29 ILE D 184 SER D 189 1 6 HELIX 30 30 GLY D 218 VAL D 225 1 8 HELIX 31 31 ASP D 234 GLY D 240 1 7 HELIX 32 32 SER D 242 SER D 250 1 9 HELIX 33 33 HIS G 5 ALA G 11 1 7 HELIX 34 34 PRO G 31 TYR G 35 5 5 HELIX 35 35 SER G 70 LEU G 88 1 19 HELIX 36 36 SER G 103 PHE G 110 1 8 SHEET 1 A 5 ALA A 29 PRO A 32 0 SHEET 2 A 5 LEU A 16 PHE A 21 -1 N VAL A 17 O PHE A 31 SHEET 3 A 5 LEU A 8 ASN A 12 -1 N VAL A 9 O GLY A 20 SHEET 4 A 5 THR A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 5 MET A 132 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 C 6 GLY A 42 MET A 44 0 SHEET 2 C 6 HIS D 64 VAL D 67 1 O VAL D 67 N VAL A 43 SHEET 3 C 6 ARG D 79 PHE D 84 -1 O PHE D 82 N VAL D 66 SHEET 4 C 6 ILE D 34 VAL D 40 -1 N ILE D 37 O LEU D 81 SHEET 5 C 6 LYS D 2 PHE D 11 1 N PHE D 6 O LEU D 36 SHEET 6 C 6 VAL D 255 THR D 258 -1 O VAL D 257 N ILE D 3 SHEET 1 D 2 ILE A 71 GLU A 72 0 SHEET 2 D 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 E 3 TYR A 169 ALA A 170 0 SHEET 2 E 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 F 4 TYR A 169 ALA A 170 0 SHEET 2 F 4 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 F 4 GLY A 150 SER A 155 -1 N GLY A 150 O ILE A 165 SHEET 4 F 4 ASN A 297 SER A 300 1 O VAL A 298 N ILE A 151 SHEET 1 G 2 LYS A 238 GLU A 241 0 SHEET 2 G 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 H 6 SER D 90 GLN D 96 0 SHEET 2 H 6 ALA D 114 SER D 119 -1 O LYS D 117 N ASP D 93 SHEET 3 H 6 GLU D 127 ALA D 132 -1 O PHE D 128 N PHE D 118 SHEET 4 H 6 VAL D 163 ASP D 168 1 O MET D 164 N ALA D 129 SHEET 5 H 6 ASP D 212 ALA D 217 -1 O VAL D 215 N LEU D 165 SHEET 6 H 6 PHE D 192 TRP D 194 -1 N GLN D 193 O VAL D 216 SHEET 1 I 5 LEU G 27 PRO G 29 0 SHEET 2 I 5 GLN G 18 VAL G 22 -1 N ARG G 21 O VAL G 28 SHEET 3 I 5 TYR G 44 GLN G 51 -1 O VAL G 45 N TRP G 20 SHEET 4 I 5 LEU G 57 LEU G 65 -1 O HIS G 62 N ILE G 46 SHEET 5 I 5 ALA G 92 VAL G 98 1 O GLU G 97 N LEU G 65 SHEET 1 J 2 ASP G 37 PHE G 39 0 SHEET 2 J 2 LYS G 115 LYS G 117 1 O LYS G 115 N PHE G 38 SSBOND 1 CYS D 101 CYS D 104 1555 1555 2.04 SSBOND 2 CYS D 173 CYS D 209 1555 1555 2.04 LINK ND2 ASN D 18 C1 NAG B 1 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK CA CA A 401 O1B ATP A 403 1555 1555 2.40 LINK CA CA A 401 O2G ATP A 403 1555 1555 2.67 LINK O GLY G 41 CA CA G 127 1555 1555 2.28 LINK OD2 ASP G 42 CA CA G 127 1555 1555 2.77 LINK OE1 GLU G 73 CA CA G 127 1555 1555 2.76 LINK O VAL G 121 CA CA G 127 1555 1555 2.34 LINK CA CA G 127 O HOH G 128 1555 1555 2.39 LINK CA CA G 127 O HOH G 129 1555 1555 2.69 CRYST1 89.303 108.566 133.761 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011198 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007476 0.00000