HEADER TRANSFERASE 12-MAR-08 3CJG TITLE CRYSTAL STRUCTURE OF VEGFR2 IN COMPLEX WITH A 3,4,5-TRIMETHOXY ANILINE TITLE 2 CONTAINING PYRIMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; RESIDUES 806-939 AND 994-1168; COMPND 5 SYNONYM: VEGFR-2, KINASE INSERT DOMAIN RECEPTOR, PROTEIN-TYROSINE COMPND 6 KINASE RECEPTOR FLK-1, CD309 ANTIGEN; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: KDR, FLK1; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 7 OTHER_DETAILS: KID INSERT REMOVED KEYWDS VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2. VEGFR-2, KINASE INSERT KEYWDS 2 DOMAIN RECEPTOR, PROTEIN-TYROSINE KINASE RECEPTOR FLK-1, KEYWDS 3 ANGIOGENESIS, ATP-BINDING, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, KEYWDS 4 GLYCOPROTEIN, HOST-VIRUS INTERACTION, IMMUNOGLOBULIN DOMAIN, KEYWDS 5 MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, TRANSFERASE, KEYWDS 6 TRANSMEMBRANE, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR R.T.NOLTE REVDAT 7 15-NOV-23 3CJG 1 REMARK REVDAT 6 30-AUG-23 3CJG 1 REMARK LINK REVDAT 5 25-OCT-17 3CJG 1 REMARK REVDAT 4 23-AUG-17 3CJG 1 SOURCE REVDAT 3 13-JUL-11 3CJG 1 VERSN REVDAT 2 24-FEB-09 3CJG 1 VERSN REVDAT 1 07-OCT-08 3CJG 0 JRNL AUTH P.A.HARRIS,A.BOLOOR,M.CHEUNG,R.KUMAR,R.M.CROSBY, JRNL AUTH 2 R.G.DAVIS-WARD,A.H.EPPERLY,K.W.HINKLE,R.N.HUNTER, JRNL AUTH 3 J.H.JOHNSON,V.B.KNICK,C.P.LAUDEMAN,D.K.LUTTRELL,R.A.MOOK, JRNL AUTH 4 R.T.NOLTE,S.K.RUDOLPH,J.R.SZEWCZYK,A.T.TRUESDALE,J.M.VEAL, JRNL AUTH 5 L.WANG,J.A.STAFFORD JRNL TITL DISCOVERY OF JRNL TITL 2 5-[[4-[(2,3-DIMETHYL-2H-INDAZOL-6-YL) JRNL TITL 3 METHYLAMINO]-2-PYRIMIDINYL]AMINO]-2-METHYL-BENZENESULFONAMID JRNL TITL 4 E (PAZOPANIB), A NOVEL AND POTENT VASCULAR ENDOTHELIAL JRNL TITL 5 GROWTH FACTOR RECEPTOR INHIBITOR. JRNL REF J.MED.CHEM. V. 51 4632 2008 JRNL REFN ISSN 0022-2623 JRNL PMID 18620382 JRNL DOI 10.1021/JM800566M REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1104 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.98000 REMARK 3 B22 (A**2) : -2.77000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.266 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2401 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1655 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3250 ; 1.277 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4010 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ;18.458 ; 5.204 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.536 ;22.991 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;14.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2681 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 505 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1744 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1189 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1187 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 96 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.066 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1479 ; 0.615 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 579 ; 0.111 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2315 ; 1.060 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 1.398 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 935 ; 2.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 814 A 918 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6140 29.8450 11.3540 REMARK 3 T TENSOR REMARK 3 T11: -0.3159 T22: -0.1604 REMARK 3 T33: -0.2146 T12: -0.0432 REMARK 3 T13: -0.0016 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 3.4051 L22: 6.0334 REMARK 3 L33: 5.8286 L12: -1.0658 REMARK 3 L13: -1.6792 L23: 0.4694 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: -0.3065 S13: 0.1560 REMARK 3 S21: 0.4726 S22: 0.0434 S23: -0.4943 REMARK 3 S31: -0.2688 S32: 0.8209 S33: -0.1843 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 919 A 1166 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7680 55.6880 18.4510 REMARK 3 T TENSOR REMARK 3 T11: -0.3275 T22: -0.2372 REMARK 3 T33: -0.1913 T12: -0.0023 REMARK 3 T13: 0.0305 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 2.3586 L22: 7.0300 REMARK 3 L33: 7.3804 L12: 0.3952 REMARK 3 L13: -1.0553 L23: 3.1832 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: 0.0273 S13: 0.0475 REMARK 3 S21: -0.3363 S22: 0.2016 S23: -0.3176 REMARK 3 S31: -0.2203 S32: 0.4765 S33: -0.1233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16998 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: UNLIGANDED VEGFR2 KINASE DOMAIN SOLVED IN HOUSE - REMARK 200 SIMILAR TO PDB ENTRY 1VR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.50500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.50500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 804 REMARK 465 ASP A 805 REMARK 465 PRO A 806 REMARK 465 ASP A 807 REMARK 465 GLU A 808 REMARK 465 LEU A 809 REMARK 465 PRO A 810 REMARK 465 LEU A 811 REMARK 465 ASP A 812 REMARK 465 GLU A 813 REMARK 465 GLY A 841 REMARK 465 ALA A 842 REMARK 465 PHE A 843 REMARK 465 TYR A 1052 REMARK 465 LYS A 1053 REMARK 465 ASP A 1054 REMARK 465 PRO A 1055 REMARK 465 ASP A 1056 REMARK 465 TYR A 1057 REMARK 465 VAL A 1058 REMARK 465 ARG A 1059 REMARK 465 LYS A 1060 REMARK 465 GLY A 1061 REMARK 465 ASP A 1062 REMARK 465 ALA A 1063 REMARK 465 ARG A 1064 REMARK 465 LEU A 1065 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 905 CE NZ REMARK 470 LYS A 995 CG CD CE NZ REMARK 470 PHE A 997 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1047 CG CD1 CD2 REMARK 470 GLN A1163 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 858 43.81 -74.73 REMARK 500 TYR A 936 14.74 45.88 REMARK 500 LYS A 995 22.78 117.91 REMARK 500 ASP A 996 1.64 -174.58 REMARK 500 ASP A1026 44.57 -151.06 REMARK 500 SER A1035 -167.54 -114.04 REMARK 500 CYS A1043 -162.35 -120.91 REMARK 500 ASP A1044 86.88 48.63 REMARK 500 LEU A1067 -54.69 74.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KIM A 1167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VR2 RELATED DB: PDB REMARK 900 RELATED STRUCTURE OF THE UNLIGANDED VERSION OF THE PROTEIN REMARK 900 RELATED ID: 1Y6A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VEGFR2 IN COMPLEX WITH A 2-ANILINO-5- ARYL- REMARK 900 OXAZOLE INHIBITOR REMARK 900 RELATED ID: 1Y6B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VEGFR2 IN COMPLEX WITH A 2-ANILINO-5- ARYL- REMARK 900 OXAZOLE INHIBITOR REMARK 900 RELATED ID: 1YWN RELATED DB: PDB REMARK 900 VEGFR2 IN COMPLEX WITH A NOVEL 4-AMINO-FURO[2,3-D]PYRIMIDINE REMARK 900 RELATED ID: 3CJF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VEGFR2 IN COMPLEX WITH A 3,4,5-TRIMETHOXY REMARK 900 ANILINE CONTAINING PYRIMIDINE, KIL REMARK 999 REMARK 999 SEQUENCE REMARK 999 K -> N CONFLICT IN UNP ENTRY P35968 DBREF 3CJG A 804 937 UNP P35968 VGFR2_HUMAN 806 939 DBREF 3CJG A 992 1166 UNP P35968 VGFR2_HUMAN 994 1168 SEQADV 3CJG ASN A 833 UNP P35968 LYS 835 SEE REMARK 999 SEQRES 1 A 309 MET ASP PRO ASP GLU LEU PRO LEU ASP GLU HIS CYS GLU SEQRES 2 A 309 ARG LEU PRO TYR ASP ALA SER LYS TRP GLU PHE PRO ARG SEQRES 3 A 309 ASP ARG LEU ASN LEU GLY LYS PRO LEU GLY ARG GLY ALA SEQRES 4 A 309 PHE GLY GLN VAL ILE GLU ALA ASP ALA PHE GLY ILE ASP SEQRES 5 A 309 LYS THR ALA THR CSO ARG THR VAL ALA VAL LYS MET LEU SEQRES 6 A 309 LYS GLU GLY ALA THR HIS SER GLU HIS ARG ALA LEU MET SEQRES 7 A 309 SER GLU LEU LYS ILE LEU ILE HIS ILE GLY HIS HIS LEU SEQRES 8 A 309 ASN VAL VAL ASN LEU LEU GLY ALA CYS THR LYS PRO GLY SEQRES 9 A 309 GLY PRO LEU MET VAL ILE VAL GLU PHE CYS LYS PHE GLY SEQRES 10 A 309 ASN LEU SER THR TYR LEU ARG SER LYS ARG ASN GLU PHE SEQRES 11 A 309 VAL PRO TYR LYS ASP LEU TYR LYS ASP PHE LEU THR LEU SEQRES 12 A 309 GLU HIS LEU ILE CYS TYR SER PHE GLN VAL ALA LYS GLY SEQRES 13 A 309 MET GLU PHE LEU ALA SER ARG LYS CSO ILE HIS ARG ASP SEQRES 14 A 309 LEU ALA ALA ARG ASN ILE LEU LEU SER GLU LYS ASN VAL SEQRES 15 A 309 VAL LYS ILE CYS ASP PHE GLY LEU ALA ARG ASP ILE TYR SEQRES 16 A 309 LYS ASP PRO ASP TYR VAL ARG LYS GLY ASP ALA ARG LEU SEQRES 17 A 309 PRO LEU LYS TRP MET ALA PRO GLU THR ILE PHE ASP ARG SEQRES 18 A 309 VAL TYR THR ILE GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 19 A 309 LEU LEU TRP GLU ILE PHE SER LEU GLY ALA SER PRO TYR SEQRES 20 A 309 PRO GLY VAL LYS ILE ASP GLU GLU PHE CYS ARG ARG LEU SEQRES 21 A 309 LYS GLU GLY THR ARG MET ARG ALA PRO ASP TYR THR THR SEQRES 22 A 309 PRO GLU MET TYR GLN THR MET LEU ASP CYS TRP HIS GLY SEQRES 23 A 309 GLU PRO SER GLN ARG PRO THR PHE SER GLU LEU VAL GLU SEQRES 24 A 309 HIS LEU GLY ASN LEU LEU GLN ALA ASN ALA MODRES 3CJG CSO A 860 CYS S-HYDROXYCYSTEINE MODRES 3CJG CSO A 1022 CYS S-HYDROXYCYSTEINE HET CSO A 860 14 HET CSO A1022 7 HET SO4 A 1 5 HET SO4 A 2 5 HET KIM A1167 31 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SO4 SULFATE ION HETNAM KIM N~4~-METHYL-N~4~-(3-METHYL-1H-INDAZOL-6-YL)-N~2~-(3,4, HETNAM 2 KIM 5-TRIMETHOXYPHENYL)PYRIMIDINE-2,4-DIAMINE FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 KIM C22 H24 N6 O3 FORMUL 5 HOH *116(H2 O) HELIX 1 1 ASP A 821 GLU A 826 1 6 HELIX 2 2 PRO A 828 ASP A 830 5 3 HELIX 3 3 THR A 873 GLY A 891 1 19 HELIX 4 4 ASN A 921 SER A 928 1 8 HELIX 5 5 THR A 999 ARG A 1020 1 22 HELIX 6 6 ALA A 1028 ARG A 1030 5 3 HELIX 7 7 GLU A 1036 ASN A 1038 5 3 HELIX 8 8 ALA A 1071 ARG A 1078 1 8 HELIX 9 9 THR A 1081 SER A 1098 1 18 HELIX 10 10 ASP A 1110 GLY A 1120 1 11 HELIX 11 11 THR A 1130 TRP A 1141 1 12 HELIX 12 12 GLU A 1144 ARG A 1148 5 5 HELIX 13 13 THR A 1150 ALA A 1166 1 17 SHEET 1 A 5 LEU A 832 GLY A 839 0 SHEET 2 A 5 GLN A 845 PHE A 852 -1 O GLU A 848 N LYS A 836 SHEET 3 A 5 CSO A 860 MET A 867 -1 O MET A 867 N GLN A 845 SHEET 4 A 5 MET A 911 GLU A 915 -1 O VAL A 914 N ALA A 864 SHEET 5 A 5 LEU A 899 CYS A 903 -1 N LEU A 900 O ILE A 913 SHEET 1 B 2 CSO A1022 ILE A1023 0 SHEET 2 B 2 ARG A1049 ASP A1050 -1 O ARG A1049 N ILE A1023 SHEET 1 C 2 ILE A1032 LEU A1034 0 SHEET 2 C 2 VAL A1040 ILE A1042 -1 O LYS A1041 N LEU A1033 LINK C THR A 859 N ACSO A 860 1555 1555 1.34 LINK C THR A 859 N BCSO A 860 1555 1555 1.33 LINK C ACSO A 860 N AARG A 861 1555 1555 1.33 LINK C BCSO A 860 N BARG A 861 1555 1555 1.33 LINK C LYS A1021 N CSO A1022 1555 1555 1.34 LINK C CSO A1022 N ILE A1023 1555 1555 1.33 SITE 1 AC1 7 LYS A 824 GLU A 826 PHE A 827 ILE A 854 SITE 2 AC1 7 LYS A 856 LEU A 900 HOH A1249 SITE 1 AC2 5 ARG A 930 ALA A1101 SER A1102 HOH A1185 SITE 2 AC2 5 HOH A1259 SITE 1 AC3 11 LEU A 838 LYS A 866 GLU A 883 GLU A 915 SITE 2 AC3 11 PHE A 916 CYS A 917 LYS A 918 GLY A 920 SITE 3 AC3 11 LEU A1033 HOH A1230 HOH A1233 CRYST1 37.700 95.540 97.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010308 0.00000