HEADER HYDROLASE 13-MAR-08 3CJP TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED AMIDOHYDROLASE CAC3332 FROM TITLE 2 CLOSTRIDIUM ACETOBUTYLICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED AMIDOHYDROLASE, DIHYDROOROTASE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM ATCC 824; SOURCE 3 ORGANISM_TAXID: 272562; SOURCE 4 STRAIN: DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787; SOURCE 5 GENE: CA_C3337; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, AMIDOHYDROLASE, KEYWDS 3 CAC3332, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,U.A.RAMAGOPAL,J.B.BONANNO,A.MEYER,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 9 21-FEB-24 3CJP 1 REMARK REVDAT 8 03-FEB-21 3CJP 1 AUTHOR JRNL REMARK SEQADV REVDAT 8 2 1 LINK REVDAT 7 14-NOV-18 3CJP 1 AUTHOR REVDAT 6 25-OCT-17 3CJP 1 REMARK REVDAT 5 13-JUL-11 3CJP 1 VERSN REVDAT 4 09-JUN-09 3CJP 1 REVDAT REVDAT 3 24-FEB-09 3CJP 1 VERSN REVDAT 2 23-DEC-08 3CJP 1 AUTHOR KEYWDS REVDAT 1 25-MAR-08 3CJP 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,U.A.RAMAGOPAL,J.B.BONANNO,A.MEYER, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN UNCHARACTERIZED AMIDOHYDROLASE JRNL TITL 2 CAC3332 FROM CLOSTRIDIUM ACETOBUTYLICUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4166 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5651 ; 1.533 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 6.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;39.316 ;25.904 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 771 ;15.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.095 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 671 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3028 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2111 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2881 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 328 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.038 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2709 ; 1.423 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4278 ; 4.439 ;20.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1642 ; 9.074 ;20.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1370 ; 4.933 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 264 REMARK 3 RESIDUE RANGE : A 3 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7231 45.7065 53.2827 REMARK 3 T TENSOR REMARK 3 T11: -0.0791 T22: -0.0083 REMARK 3 T33: -0.0391 T12: -0.0012 REMARK 3 T13: 0.0098 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.3140 L22: 0.9561 REMARK 3 L33: 0.5064 L12: -0.0045 REMARK 3 L13: 0.0261 L23: 0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.0063 S13: -0.0131 REMARK 3 S21: 0.0062 S22: -0.0041 S23: 0.0640 REMARK 3 S31: -0.0177 S32: -0.0605 S33: 0.0199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3CJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : HORIZONTAL FOCUSING SAGITAL BEND REMARK 200 MONOCRYSTAL AND VERTICALLY REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI SULFATE, 0.1 M BIS-TRIS, 25% REMARK 280 PEG 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.63650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 265 REMARK 465 GLY A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 265 REMARK 465 GLY B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 304 O HOH A 426 1.86 REMARK 500 OD1 ASP B 28 O HOH B 611 1.96 REMARK 500 O LEU B 3 O HOH B 470 2.07 REMARK 500 O PHE A 91 O HOH A 453 2.11 REMARK 500 O HOH B 439 O HOH B 546 2.14 REMARK 500 O HOH B 452 O HOH B 608 2.18 REMARK 500 O HOH A 339 O HOH B 546 2.18 REMARK 500 O HOH A 396 O HOH B 523 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 105.99 -160.36 REMARK 500 ASN A 44 147.50 67.16 REMARK 500 ASN A 64 -2.25 -58.58 REMARK 500 ILE A 111 -63.55 -99.38 REMARK 500 SER A 142 -149.22 -82.45 REMARK 500 HIS B 8 103.19 -167.92 REMARK 500 ASN B 44 153.60 68.59 REMARK 500 ILE B 111 -66.28 -103.69 REMARK 500 ASP B 141 -79.69 -84.33 REMARK 500 SER B 144 52.49 39.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 3 ILE B 4 147.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 8 NE2 REMARK 620 2 HIS A 10 NE2 105.3 REMARK 620 3 ASP A 227 OD1 85.6 98.1 REMARK 620 4 HOH A 304 O 136.7 109.4 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 121 OE2 REMARK 620 2 HIS A 150 ND1 96.1 REMARK 620 3 HIS A 179 NE2 118.2 102.1 REMARK 620 4 HOH A 304 O 98.8 118.7 121.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 8 NE2 REMARK 620 2 HIS B 10 NE2 105.7 REMARK 620 3 ASP B 227 OD1 85.4 92.7 REMARK 620 4 HOH B 439 O 135.9 112.9 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 121 OE2 REMARK 620 2 HIS B 150 ND1 99.2 REMARK 620 3 HIS B 179 NE2 112.2 97.3 REMARK 620 4 HOH B 439 O 103.0 123.6 119.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9321A RELATED DB: TARGETDB DBREF 3CJP A 4 264 UNP Q97DY3 Q97DY3_CLOAB 2 262 DBREF 3CJP B 4 264 UNP Q97DY3 Q97DY3_CLOAB 2 262 SEQADV 3CJP MET A 1 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP SER A 2 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP LEU A 3 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP GLU A 265 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP GLY A 266 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS A 267 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS A 268 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS A 269 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS A 270 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS A 271 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS A 272 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP MET B 1 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP SER B 2 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP LEU B 3 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP GLU B 265 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP GLY B 266 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS B 267 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS B 268 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS B 269 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS B 270 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS B 271 UNP Q97DY3 EXPRESSION TAG SEQADV 3CJP HIS B 272 UNP Q97DY3 EXPRESSION TAG SEQRES 1 A 272 MET SER LEU ILE ILE ASP GLY HIS THR HIS VAL ILE LEU SEQRES 2 A 272 PRO VAL GLU LYS HIS ILE LYS ILE MET ASP GLU ALA GLY SEQRES 3 A 272 VAL ASP LYS THR ILE LEU PHE SER THR SER ILE HIS PRO SEQRES 4 A 272 GLU THR ALA VAL ASN LEU ARG ASP VAL LYS LYS GLU MET SEQRES 5 A 272 LYS LYS LEU ASN ASP VAL VAL ASN GLY LYS THR ASN SER SEQRES 6 A 272 MET ILE ASP VAL ARG ARG ASN SER ILE LYS GLU LEU THR SEQRES 7 A 272 ASN VAL ILE GLN ALA TYR PRO SER ARG TYR VAL GLY PHE SEQRES 8 A 272 GLY ASN VAL PRO VAL GLY LEU SER GLU ASN ASP THR ASN SEQRES 9 A 272 SER TYR ILE GLU GLU ASN ILE VAL ASN ASN LYS LEU VAL SEQRES 10 A 272 GLY ILE GLY GLU LEU THR PRO ALA SER GLY GLN ILE LYS SEQRES 11 A 272 SER LEU LYS PRO ILE PHE LYS TYR SER MET ASP SER GLY SEQRES 12 A 272 SER LEU PRO ILE TRP ILE HIS ALA PHE ASN PRO LEU VAL SEQRES 13 A 272 LEU GLN ASP ILE LYS GLU ILE ALA GLU LEU CYS LYS ALA SEQRES 14 A 272 PHE PRO LYS VAL PRO VAL ILE LEU GLY HIS MET GLY GLY SEQRES 15 A 272 SER ASN TRP MET THR ALA VAL GLU LEU ALA LYS GLU ILE SEQRES 16 A 272 GLN ASN LEU TYR LEU ASP THR SER ALA TYR PHE SER THR SEQRES 17 A 272 PHE VAL LEU LYS ILE VAL ILE ASN GLU LEU PRO LEU LYS SEQRES 18 A 272 CYS ILE PHE GLY THR ASP MET PRO PHE GLY ASP LEU GLN SEQRES 19 A 272 LEU SER ILE GLU ALA ILE LYS LYS MET SER ASN ASP SER SEQRES 20 A 272 TYR VAL ALA ASN ALA VAL LEU GLY ASP ASN ILE SER ARG SEQRES 21 A 272 LEU LEU ASN ILE GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 272 MET SER LEU ILE ILE ASP GLY HIS THR HIS VAL ILE LEU SEQRES 2 B 272 PRO VAL GLU LYS HIS ILE LYS ILE MET ASP GLU ALA GLY SEQRES 3 B 272 VAL ASP LYS THR ILE LEU PHE SER THR SER ILE HIS PRO SEQRES 4 B 272 GLU THR ALA VAL ASN LEU ARG ASP VAL LYS LYS GLU MET SEQRES 5 B 272 LYS LYS LEU ASN ASP VAL VAL ASN GLY LYS THR ASN SER SEQRES 6 B 272 MET ILE ASP VAL ARG ARG ASN SER ILE LYS GLU LEU THR SEQRES 7 B 272 ASN VAL ILE GLN ALA TYR PRO SER ARG TYR VAL GLY PHE SEQRES 8 B 272 GLY ASN VAL PRO VAL GLY LEU SER GLU ASN ASP THR ASN SEQRES 9 B 272 SER TYR ILE GLU GLU ASN ILE VAL ASN ASN LYS LEU VAL SEQRES 10 B 272 GLY ILE GLY GLU LEU THR PRO ALA SER GLY GLN ILE LYS SEQRES 11 B 272 SER LEU LYS PRO ILE PHE LYS TYR SER MET ASP SER GLY SEQRES 12 B 272 SER LEU PRO ILE TRP ILE HIS ALA PHE ASN PRO LEU VAL SEQRES 13 B 272 LEU GLN ASP ILE LYS GLU ILE ALA GLU LEU CYS LYS ALA SEQRES 14 B 272 PHE PRO LYS VAL PRO VAL ILE LEU GLY HIS MET GLY GLY SEQRES 15 B 272 SER ASN TRP MET THR ALA VAL GLU LEU ALA LYS GLU ILE SEQRES 16 B 272 GLN ASN LEU TYR LEU ASP THR SER ALA TYR PHE SER THR SEQRES 17 B 272 PHE VAL LEU LYS ILE VAL ILE ASN GLU LEU PRO LEU LYS SEQRES 18 B 272 CYS ILE PHE GLY THR ASP MET PRO PHE GLY ASP LEU GLN SEQRES 19 B 272 LEU SER ILE GLU ALA ILE LYS LYS MET SER ASN ASP SER SEQRES 20 B 272 TYR VAL ALA ASN ALA VAL LEU GLY ASP ASN ILE SER ARG SEQRES 21 B 272 LEU LEU ASN ILE GLU GLY HIS HIS HIS HIS HIS HIS HET ZN A 301 1 HET ZN A 302 1 HET ZN B 301 1 HET ZN B 302 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *343(H2 O) HELIX 1 1 PRO A 14 GLY A 26 1 13 HELIX 2 2 HIS A 38 ALA A 42 5 5 HELIX 3 3 ASN A 44 ASN A 60 1 17 HELIX 4 4 MET A 66 TYR A 84 1 19 HELIX 5 5 SER A 99 ILE A 111 1 13 HELIX 6 6 GLN A 128 SER A 131 5 4 HELIX 7 7 LEU A 132 SER A 142 1 11 HELIX 8 8 VAL A 156 PHE A 170 1 15 HELIX 9 9 HIS A 179 SER A 183 5 5 HELIX 10 10 ASN A 184 ILE A 195 1 12 HELIX 11 11 SER A 207 LEU A 218 1 12 HELIX 12 12 ASP A 232 SER A 244 1 13 HELIX 13 13 ASP A 246 GLY A 255 1 10 HELIX 14 14 GLY A 255 ASN A 263 1 9 HELIX 15 15 PRO B 14 GLY B 26 1 13 HELIX 16 16 HIS B 38 ALA B 42 5 5 HELIX 17 17 ASN B 44 ASN B 60 1 17 HELIX 18 18 ILE B 67 TYR B 84 1 18 HELIX 19 19 SER B 99 ILE B 111 1 13 HELIX 20 20 VAL B 112 LYS B 115 5 4 HELIX 21 21 GLN B 128 SER B 131 5 4 HELIX 22 22 LEU B 132 SER B 142 1 11 HELIX 23 23 VAL B 156 PHE B 170 1 15 HELIX 24 24 HIS B 179 SER B 183 5 5 HELIX 25 25 ASN B 184 ILE B 195 1 12 HELIX 26 26 SER B 207 LEU B 218 1 12 HELIX 27 27 ASP B 232 SER B 244 1 13 HELIX 28 28 ASP B 246 GLY B 255 1 10 HELIX 29 29 GLY B 255 ASN B 263 1 9 SHEET 1 A 8 ILE A 5 HIS A 10 0 SHEET 2 A 8 LYS A 29 PHE A 33 1 O ILE A 31 N ASP A 6 SHEET 3 A 8 TYR A 88 GLY A 92 1 O VAL A 89 N LEU A 32 SHEET 4 A 8 GLY A 118 LEU A 122 1 O GLY A 118 N GLY A 92 SHEET 5 A 8 ILE A 147 ILE A 149 1 O TRP A 148 N LEU A 122 SHEET 6 A 8 VAL A 175 LEU A 177 1 O ILE A 176 N ILE A 147 SHEET 7 A 8 LEU A 198 ASP A 201 1 O TYR A 199 N VAL A 175 SHEET 8 A 8 CYS A 222 ILE A 223 1 O ILE A 223 N LEU A 200 SHEET 1 B 8 ILE B 5 HIS B 10 0 SHEET 2 B 8 LYS B 29 PHE B 33 1 O ILE B 31 N ASP B 6 SHEET 3 B 8 TYR B 88 GLY B 92 1 O VAL B 89 N LEU B 32 SHEET 4 B 8 GLY B 118 LEU B 122 1 O GLY B 118 N GLY B 92 SHEET 5 B 8 ILE B 147 ILE B 149 1 O TRP B 148 N LEU B 122 SHEET 6 B 8 VAL B 175 LEU B 177 1 O ILE B 176 N ILE B 147 SHEET 7 B 8 LEU B 198 ASP B 201 1 O TYR B 199 N VAL B 175 SHEET 8 B 8 CYS B 222 ILE B 223 1 O ILE B 223 N LEU B 200 LINK NE2 HIS A 8 ZN ZN A 302 1555 1555 2.12 LINK NE2 HIS A 10 ZN ZN A 302 1555 1555 2.07 LINK OE2 GLU A 121 ZN ZN A 301 1555 1555 1.98 LINK ND1 HIS A 150 ZN ZN A 301 1555 1555 2.09 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 2.02 LINK OD1 ASP A 227 ZN ZN A 302 1555 1555 2.10 LINK ZN ZN A 301 O HOH A 304 1555 1555 2.20 LINK ZN ZN A 302 O HOH A 304 1555 1555 2.30 LINK NE2 HIS B 8 ZN ZN B 302 1555 1555 2.11 LINK NE2 HIS B 10 ZN ZN B 302 1555 1555 2.08 LINK OE2 GLU B 121 ZN ZN B 301 1555 1555 1.99 LINK ND1 HIS B 150 ZN ZN B 301 1555 1555 2.10 LINK NE2 HIS B 179 ZN ZN B 301 1555 1555 2.09 LINK OD1 ASP B 227 ZN ZN B 302 1555 1555 2.09 LINK ZN ZN B 301 O HOH B 439 1555 1555 2.24 LINK ZN ZN B 302 O HOH B 439 1555 1555 2.29 CISPEP 1 LEU A 13 PRO A 14 0 -4.63 CISPEP 2 GLY A 120 GLU A 121 0 0.32 CISPEP 3 ASN A 153 PRO A 154 0 8.11 CISPEP 4 MET A 228 PRO A 229 0 6.01 CISPEP 5 LEU B 13 PRO B 14 0 -11.01 CISPEP 6 GLY B 120 GLU B 121 0 1.58 CISPEP 7 ASN B 153 PRO B 154 0 10.11 CISPEP 8 MET B 228 PRO B 229 0 6.02 SITE 1 AC1 3 GLU A 121 HIS A 150 HIS A 179 SITE 1 AC2 4 HIS A 8 HIS A 10 GLU A 121 ASP A 227 SITE 1 AC3 3 GLU B 121 HIS B 150 HIS B 179 SITE 1 AC4 4 HIS B 8 HIS B 10 GLU B 121 ASP B 227 CRYST1 47.628 77.273 72.661 90.00 96.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020996 0.000000 0.002240 0.00000 SCALE2 0.000000 0.012941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013841 0.00000