HEADER TRANSCRIPTION 14-MAR-08 3CJW TITLE CRYSTAL STRUCTURE OF THE HUMAN COUP-TFII LIGAND BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COUP TRANSCRIPTION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, RESIDUES 173-412; COMPND 5 SYNONYM: COUP-TF2, COUP-TF II, NUCLEAR RECEPTOR SUBFAMILY 2 GROUP F COMPND 6 MEMBER 2, APOLIPOPROTEIN AI REGULATORY PROTEIN 1, ARP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR2F2, ARP1, TFCOUP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS COUP-TFII, NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, ORPHAN RECEPTOR, KEYWDS 2 THREE-LAYERED HELICAL SANDWICH, DNA-BINDING, METAL-BINDING, NUCLEUS, KEYWDS 3 RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR S.W.KRUSE,R.REYNOLDS,C.VONRHEIN,H.E.XU REVDAT 4 21-FEB-24 3CJW 1 REMARK REVDAT 3 06-MAY-20 3CJW 1 SOURCE REMARK SEQADV REVDAT 2 24-FEB-09 3CJW 1 VERSN REVDAT 1 07-OCT-08 3CJW 0 JRNL AUTH S.W.KRUSE,K.SUINO-POWELL,X.E.ZHOU,J.E.KRETSCHMAN,R.REYNOLDS, JRNL AUTH 2 C.VONRHEIN,Y.XU,L.WANG,S.Y.TSAI,M.J.TSAI,H.E.XU JRNL TITL IDENTIFICATION OF COUP-TFII ORPHAN NUCLEAR RECEPTOR AS A JRNL TITL 2 RETINOIC ACID-ACTIVATED RECEPTOR. JRNL REF PLOS BIOL. V. 6 E227 2008 JRNL REFN ISSN 1544-9173 JRNL PMID 18798693 JRNL DOI 10.1371/JOURNAL.PBIO.0060227 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 7.7 REMARK 3 NUMBER OF REFLECTIONS : 29483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1919 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7, 1.0, 1.4, 1.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M IMIDAZOLE, PH 5.6, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.92700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.88100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.92700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.88100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.72087 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.35418 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 194 REMARK 465 ARG A 195 REMARK 465 PHE A 196 REMARK 465 GLY A 197 REMARK 465 SER A 198 REMARK 465 GLN A 199 REMARK 465 CYS A 200 REMARK 465 MET A 201 REMARK 465 GLN A 202 REMARK 465 PRO A 203 REMARK 465 ASN A 204 REMARK 465 ASN A 205 REMARK 465 ILE A 206 REMARK 465 LEU A 269 REMARK 465 LEU A 270 REMARK 465 ALA A 271 REMARK 465 ALA A 272 REMARK 465 ALA A 273 REMARK 465 GLY A 274 REMARK 465 LEU A 275 REMARK 465 HIS A 276 REMARK 465 ALA A 277 REMARK 465 SER A 278 REMARK 465 PRO A 279 REMARK 465 MET A 280 REMARK 465 SER A 281 REMARK 465 ALA A 282 REMARK 465 ASP A 283 REMARK 465 ARG A 284 REMARK 465 VAL A 285 REMARK 465 TRP A 408 REMARK 465 PRO A 409 REMARK 465 TYR A 410 REMARK 465 MET A 411 REMARK 465 ALA A 412 REMARK 465 ILE A 413 REMARK 465 GLN A 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 225 NH2 ARG A 228 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 222 CB SER A 222 OG -0.081 REMARK 500 PHE A 288 CD1 PHE A 288 CE1 0.163 REMARK 500 ILE A 294 CB ILE A 294 CG2 0.425 REMARK 500 PHE A 295 CB PHE A 295 CG -0.126 REMARK 500 PHE A 295 CZ PHE A 295 CE2 -0.147 REMARK 500 GLU A 339 CG GLU A 339 CD -0.155 REMARK 500 GLN A 342 CB GLN A 342 CG -0.176 REMARK 500 CYS A 343 CA CYS A 343 CB 0.185 REMARK 500 CYS A 343 CB CYS A 343 SG -0.190 REMARK 500 GLU A 346 CG GLU A 346 CD -0.092 REMARK 500 ARG A 397 CD ARG A 397 NE -0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 191 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO A 192 C - N - CA ANGL. DEV. = -12.1 DEGREES REMARK 500 ALA A 267 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO A 268 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 ILE A 294 CB - CG1 - CD1 ANGL. DEV. = -20.9 DEGREES REMARK 500 LEU A 305 CA - CB - CG ANGL. DEV. = 26.9 DEGREES REMARK 500 LEU A 305 CB - CG - CD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 LYS A 316 CD - CE - NZ ANGL. DEV. = 15.4 DEGREES REMARK 500 CYS A 326 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 330 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 330 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 CYS A 343 CB - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 CYS A 343 CA - CB - SG ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG A 350 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 366 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 366 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 370 CB - CG - CD2 ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 397 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 397 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 174 -57.72 -20.96 REMARK 500 TYR A 191 -126.43 -97.37 REMARK 500 ILE A 209 121.63 39.80 REMARK 500 PHE A 232 -50.73 79.28 REMARK 500 ALA A 267 81.86 152.14 REMARK 500 PHE A 288 -144.78 -47.85 REMARK 500 MET A 289 8.78 -169.07 REMARK 500 LYS A 389 -85.44 96.66 REMARK 500 SER A 402 -143.62 -96.68 REMARK 500 SER A 404 -154.20 74.45 REMARK 500 SER A 405 142.03 -9.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 172 ASN A 173 118.76 REMARK 500 HIS A 265 VAL A 266 -144.09 REMARK 500 ALA A 267 PRO A 268 -139.59 REMARK 500 PHE A 288 MET A 289 129.79 REMARK 500 GLY A 388 LYS A 389 30.52 REMARK 500 SER A 402 GLY A 403 133.14 REMARK 500 SER A 404 SER A 405 -142.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 397 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 3CJW A 175 414 UNP P24468 COT2_HUMAN 173 412 SEQADV 3CJW GLY A 171 UNP P24468 EXPRESSION TAG SEQADV 3CJW SER A 172 UNP P24468 EXPRESSION TAG SEQADV 3CJW ASN A 173 UNP P24468 EXPRESSION TAG SEQADV 3CJW SER A 174 UNP P24468 EXPRESSION TAG SEQRES 1 A 244 GLY SER ASN SER HIS SER TYR LEU SER GLY TYR ILE SER SEQRES 2 A 244 LEU LEU LEU ARG ALA GLU PRO TYR PRO THR SER ARG PHE SEQRES 3 A 244 GLY SER GLN CYS MET GLN PRO ASN ASN ILE MET GLY ILE SEQRES 4 A 244 GLU ASN ILE CYS GLU LEU ALA ALA ARG MET LEU PHE SER SEQRES 5 A 244 ALA VAL GLU TRP ALA ARG ASN ILE PRO PHE PHE PRO ASP SEQRES 6 A 244 LEU GLN ILE THR ASP GLN VAL ALA LEU LEU ARG LEU THR SEQRES 7 A 244 TRP SER GLU LEU PHE VAL LEU ASN ALA ALA GLN CYS SER SEQRES 8 A 244 MET PRO LEU HIS VAL ALA PRO LEU LEU ALA ALA ALA GLY SEQRES 9 A 244 LEU HIS ALA SER PRO MET SER ALA ASP ARG VAL VAL ALA SEQRES 10 A 244 PHE MET ASP HIS ILE ARG ILE PHE GLN GLU GLN VAL GLU SEQRES 11 A 244 LYS LEU LYS ALA LEU HIS VAL ASP SER ALA GLU TYR SER SEQRES 12 A 244 CYS LEU LYS ALA ILE VAL LEU PHE THR SER ASP ALA CYS SEQRES 13 A 244 GLY LEU SER ASP VAL ALA HIS VAL GLU SER LEU GLN GLU SEQRES 14 A 244 LYS SER GLN CYS ALA LEU GLU GLU TYR VAL ARG SER GLN SEQRES 15 A 244 TYR PRO ASN GLN PRO THR ARG PHE GLY LYS LEU LEU LEU SEQRES 16 A 244 ARG LEU PRO SER LEU ARG THR VAL SER SER SER VAL ILE SEQRES 17 A 244 GLU GLN LEU PHE PHE VAL ARG LEU VAL GLY LYS THR PRO SEQRES 18 A 244 ILE GLU THR LEU ILE ARG ASP MET LEU LEU SER GLY SER SEQRES 19 A 244 SER PHE ASN TRP PRO TYR MET ALA ILE GLN HELIX 1 1 ASN A 173 ALA A 188 1 16 HELIX 2 2 ASN A 211 ILE A 230 1 20 HELIX 3 3 PHE A 232 LEU A 236 5 5 HELIX 4 4 GLN A 237 SER A 261 1 25 HELIX 5 5 MET A 289 LEU A 305 1 17 HELIX 6 6 ASP A 308 PHE A 321 1 14 HELIX 7 7 ASP A 330 TYR A 353 1 24 HELIX 8 8 THR A 358 LEU A 365 1 8 HELIX 9 9 ARG A 366 VAL A 373 1 8 HELIX 10 10 SER A 374 PHE A 383 1 10 HELIX 11 11 PHE A 383 GLY A 388 1 6 HELIX 12 12 PRO A 391 THR A 394 5 4 HELIX 13 13 LEU A 395 LEU A 401 1 7 CRYST1 97.854 47.762 43.128 90.00 100.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010219 0.000000 0.001962 0.00000 SCALE2 0.000000 0.020937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023610 0.00000