HEADER SUGAR BINDING PROTEIN 14-MAR-08 3CK9 TITLE B. THETAIOTAOMICRON SUSD WITH MALTOHEPTAOSE CAVEAT 3CK9 GLC C 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26-551; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 STRAIN: VPI-5482; SOURCE 4 GENE: SUSD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS TPR REPEAT, CARBOHYDRATE BINDING, STARCH BINDING, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN,E.C.MARTENS,J.I.GORDON,T.J.SMITH REVDAT 5 30-AUG-23 3CK9 1 HETSYN REVDAT 4 29-JUL-20 3CK9 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE ATOM REVDAT 3 24-FEB-09 3CK9 1 VERSN REVDAT 2 22-JUL-08 3CK9 1 JRNL REVDAT 1 20-MAY-08 3CK9 0 JRNL AUTH N.M.KOROPATKIN,E.C.MARTENS,J.I.GORDON,T.J.SMITH JRNL TITL STARCH CATABOLISM BY A PROMINENT HUMAN GUT SYMBIONT IS JRNL TITL 2 DIRECTED BY THE RECOGNITION OF AMYLOSE HELICES. JRNL REF STRUCTURE V. 16 1105 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18611383 JRNL DOI 10.1016/J.STR.2008.03.017 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 55833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 5665 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 201 REMARK 3 SOLVENT ATOMS : 728 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.42300 REMARK 3 B22 (A**2) : 0.25700 REMARK 3 B33 (A**2) : 3.16600 REMARK 3 B12 (A**2) : 5.17900 REMARK 3 B13 (A**2) : -1.99000 REMARK 3 B23 (A**2) : 1.03400 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.716 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.860 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.537 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 36.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : EG.PARAM REMARK 3 PARAMETER FILE 5 : MTT6.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 4 : EG.TOP REMARK 3 TOPOLOGY FILE 5 : MTT6.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56299 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08650 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3CKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM CACODYLATE, 75MM CALCIUM REMARK 280 ACETATE, 14% PEG 8000, 50MM MALTOHEPTAOSE, PH 6.0, SEEDING IN REMARK 280 BATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 ILE A 26 REMARK 465 ASN A 27 REMARK 465 ASP A 28 REMARK 465 LEU A 29 REMARK 465 ASP A 30 REMARK 465 ILE A 31 REMARK 465 SER A 32 REMARK 465 PRO A 33 REMARK 465 ILE A 34 REMARK 465 ASP A 35 REMARK 465 PRO A 36 REMARK 465 LYS A 61 REMARK 465 GLY A 62 REMARK 465 ILE A 63 REMARK 465 ASP A 64 REMARK 465 GLY A 65 REMARK 465 SER A 66 REMARK 465 PRO A 67 REMARK 465 GLY B 25 REMARK 465 ILE B 26 REMARK 465 ASN B 27 REMARK 465 ASP B 28 REMARK 465 LEU B 29 REMARK 465 ASP B 30 REMARK 465 ILE B 31 REMARK 465 SER B 32 REMARK 465 PRO B 33 REMARK 465 ILE B 34 REMARK 465 ASP B 35 REMARK 465 PRO B 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 59 O HOH A 879 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 65 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 88 -56.56 -130.40 REMARK 500 SER A 180 -171.72 -170.71 REMARK 500 ASP A 242 53.53 -157.32 REMARK 500 GLU A 274 40.72 -148.19 REMARK 500 ASN A 295 113.14 -164.31 REMARK 500 VAL A 303 -60.84 -94.97 REMARK 500 ASN A 415 51.07 -102.35 REMARK 500 ASP B 64 82.24 -178.78 REMARK 500 GLU B 88 -58.13 -122.48 REMARK 500 ALA B 173 146.77 -172.69 REMARK 500 ASP B 242 54.35 -160.29 REMARK 500 GLU B 274 15.27 -148.02 REMARK 500 ASN B 295 111.96 -161.91 REMARK 500 VAL B 303 -60.13 -95.37 REMARK 500 LEU B 337 -6.08 -56.73 REMARK 500 ASN B 415 51.64 -108.30 REMARK 500 LEU B 491 38.44 72.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 273 OD2 REMARK 620 2 GLN A 288 O 152.7 REMARK 620 3 ASP A 430 O 134.6 69.7 REMARK 620 4 ASP A 432 OD1 106.8 79.5 93.1 REMARK 620 5 HOH A1134 O 75.4 131.6 63.1 92.4 REMARK 620 6 HOH A1208 O 80.1 91.3 86.3 170.4 95.9 REMARK 620 7 HOH A1214 O 80.9 72.3 140.1 91.6 156.1 82.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 710 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 274 OE1 REMARK 620 2 GLU A 274 OE2 50.7 REMARK 620 3 EDO A 731 O1 69.7 73.9 REMARK 620 4 HOH A 984 O 95.7 84.3 158.2 REMARK 620 5 HOH A 992 O 79.2 128.9 100.4 92.3 REMARK 620 6 HOH A1031 O 142.0 157.0 125.7 75.8 64.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 700 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 273 OD2 REMARK 620 2 GLN B 288 O 154.1 REMARK 620 3 ASP B 430 O 135.8 69.2 REMARK 620 4 ASP B 432 OD1 105.2 77.1 90.1 REMARK 620 5 HOH B1053 O 87.0 90.5 83.1 167.3 REMARK 620 6 HOH B1261 O 74.9 130.9 63.8 89.3 97.2 REMARK 620 7 HOH B1292 O 80.4 73.8 142.2 89.0 89.9 153.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 720 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 274 OE1 REMARK 620 2 GLU B 274 OE2 50.0 REMARK 620 3 HOH B1182 O 89.5 93.0 REMARK 620 4 HOH B1188 O 74.3 123.4 95.5 REMARK 620 5 HOH B1277 O 129.7 80.5 84.3 156.0 REMARK 620 6 HOH B1278 O 157.4 136.4 69.6 98.5 58.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CK7 RELATED DB: PDB REMARK 900 B. THETAIOTAOMICRON SUSD WITH ALPHA-CYCLODEXTRIN REMARK 900 RELATED ID: 3CK8 RELATED DB: PDB REMARK 900 B. THETAIOTAOMICRON SUSD WITH BETA-CYCLODEXTRIN REMARK 900 RELATED ID: 3CKB RELATED DB: PDB REMARK 900 B. THETAIOTAOMICRON SUSD WITH MALTOTRIOSE REMARK 900 RELATED ID: 3CKC RELATED DB: PDB REMARK 900 B. THETAIOTAOMICRON SUSD REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ORIGINAL SUSD GENE SEQUENCE DEPOSITED BY WASHINGTON REMARK 999 UNIVERSITY (FROM JEFFREY I. GORDON'S LABORATORY) IS INCORRECT. REMARK 999 THE SAME LAB HAS SUBSEQUENTLY RE-SEQUENCED THE GENE AND REMARK 999 CONFIRMED THAT LYS IS THE CORRECT AMINO ACID AT THIS POSITION. DBREF 3CK9 A 26 551 UNP Q8A1G2 Q8A1G2_BACTN 26 551 DBREF 3CK9 B 26 551 UNP Q8A1G2 Q8A1G2_BACTN 26 551 SEQADV 3CK9 GLY A 25 UNP Q8A1G2 EXPRESSION TAG SEQADV 3CK9 LYS A 100 UNP Q8A1G2 GLU 100 SEE REMARK 999 SEQADV 3CK9 GLY B 25 UNP Q8A1G2 EXPRESSION TAG SEQADV 3CK9 LYS B 100 UNP Q8A1G2 GLU 100 SEE REMARK 999 SEQRES 1 A 527 GLY ILE ASN ASP LEU ASP ILE SER PRO ILE ASP PRO GLN SEQRES 2 A 527 THR GLY GLY SER PHE ASP GLN GLN GLY VAL PHE VAL LYS SEQRES 3 A 527 GLY TYR ALA MET LEU GLY VAL THR GLY GLN LYS GLY ILE SEQRES 4 A 527 ASP GLY SER PRO ASP LEU ASP GLY GLN ASP GLU GLY GLU SEQRES 5 A 527 SER GLY PHE TYR ARG THR THR PHE ASN CYS ASN GLU LEU SEQRES 6 A 527 PRO THR ASP GLU CYS LEU TRP ALA TRP GLN LYS ASN GLN SEQRES 7 A 527 ASP ILE PRO GLN LEU THR SER ILE SER TRP SER PRO SER SEQRES 8 A 527 SER GLN ARG THR GLU TRP VAL TYR VAL ARG LEU GLY TYR SEQRES 9 A 527 ASP ILE THR GLN TYR ASN PHE PHE LEU ASP GLN THR GLU SEQRES 10 A 527 GLY MET THR ASP ALA GLU THR LEU ARG GLN ARG ALA GLU SEQRES 11 A 527 ILE ARG PHE LEU ARG ALA LEU HIS TYR TRP TYR PHE LEU SEQRES 12 A 527 ASP LEU PHE GLY LYS ALA PRO PHE LYS GLU HIS PHE SER SEQRES 13 A 527 ASN ASP LEU PRO VAL GLU LYS LYS GLY THR GLU LEU TYR SEQRES 14 A 527 THR TYR ILE GLN ASN GLU LEU ASN GLU ILE GLU ALA ASP SEQRES 15 A 527 MET TYR GLU PRO ARG GLN ALA PRO PHE GLY ARG ALA ASP SEQRES 16 A 527 LYS ALA ALA ASN TRP LEU LEU ARG ALA ARG LEU TYR LEU SEQRES 17 A 527 ASN ALA GLY VAL TYR THR GLY GLN THR ASP TYR ALA LYS SEQRES 18 A 527 ALA GLU GLU TYR ALA SER LYS VAL ILE GLY SER ALA TYR SEQRES 19 A 527 LYS LEU CYS THR ASN TYR SER GLU LEU PHE MET ALA ASP SEQRES 20 A 527 ASN ASP GLU ASN GLU ASN ALA MET GLN GLU ILE ILE LEU SEQRES 21 A 527 PRO ILE ARG GLN ASP GLY VAL LYS THR ARG ASN TYR GLY SEQRES 22 A 527 GLY SER THR TYR LEU VAL CYS GLY THR ARG VAL ALA GLY SEQRES 23 A 527 MET PRO ARG MET GLY THR THR ASN GLY TRP SER CYS ILE SEQRES 24 A 527 PHE ALA ARG ALA ALA MET VAL GLN LYS PHE PHE SER ASN SEQRES 25 A 527 LEU GLU ASP VAL PRO MET LEU PRO ALA ASP VAL GLU ILE SEQRES 26 A 527 PRO THR LYS GLY LEU ASP THR ASP GLU GLN ILE ASP ALA SEQRES 27 A 527 PHE ASP ALA GLU HIS GLY ILE ARG THR GLU ASP MET ILE SEQRES 28 A 527 LYS ALA ALA GLY ASP ASP ARG ALA LEU LEU TYR SER GLY SEQRES 29 A 527 VAL GLY GLY GLY ARG ARG LYS ILE GLN THR ASP ALA ILE SEQRES 30 A 527 SER GLY PHE THR ASP GLY LEU SER ILE VAL LYS TRP GLN SEQRES 31 A 527 ASN TYR ARG SER ASP GLY LYS PRO VAL SER HIS ALA THR SEQRES 32 A 527 TYR PRO ASP THR ASP ILE PRO LEU PHE ARG LEU ALA GLU SEQRES 33 A 527 ALA TYR LEU THR ARG ALA GLU ALA ILE PHE ARG GLN GLY SEQRES 34 A 527 GLY ASP ALA THR GLY ASP ILE ASN GLU LEU ARG LYS ARG SEQRES 35 A 527 ALA ASN CYS THR ARG LYS VAL GLN THR VAL THR GLU GLN SEQRES 36 A 527 GLU LEU ILE ASP GLU TRP ALA ARG GLU PHE TYR LEU GLU SEQRES 37 A 527 GLY ARG ARG ARG SER ASP LEU VAL ARG PHE GLY MET PHE SEQRES 38 A 527 THR THR ASN LYS TYR LEU TRP ASP TRP LYS GLY GLY ALA SEQRES 39 A 527 MET ASN GLY THR SER VAL ALA SER TYR TYR ASN LYS TYR SEQRES 40 A 527 PRO ILE PRO VAL SER ASP ILE ASN ASN ASN ARG ASN MET SEQRES 41 A 527 SER GLN ASN GLU GLY TYR LYS SEQRES 1 B 527 GLY ILE ASN ASP LEU ASP ILE SER PRO ILE ASP PRO GLN SEQRES 2 B 527 THR GLY GLY SER PHE ASP GLN GLN GLY VAL PHE VAL LYS SEQRES 3 B 527 GLY TYR ALA MET LEU GLY VAL THR GLY GLN LYS GLY ILE SEQRES 4 B 527 ASP GLY SER PRO ASP LEU ASP GLY GLN ASP GLU GLY GLU SEQRES 5 B 527 SER GLY PHE TYR ARG THR THR PHE ASN CYS ASN GLU LEU SEQRES 6 B 527 PRO THR ASP GLU CYS LEU TRP ALA TRP GLN LYS ASN GLN SEQRES 7 B 527 ASP ILE PRO GLN LEU THR SER ILE SER TRP SER PRO SER SEQRES 8 B 527 SER GLN ARG THR GLU TRP VAL TYR VAL ARG LEU GLY TYR SEQRES 9 B 527 ASP ILE THR GLN TYR ASN PHE PHE LEU ASP GLN THR GLU SEQRES 10 B 527 GLY MET THR ASP ALA GLU THR LEU ARG GLN ARG ALA GLU SEQRES 11 B 527 ILE ARG PHE LEU ARG ALA LEU HIS TYR TRP TYR PHE LEU SEQRES 12 B 527 ASP LEU PHE GLY LYS ALA PRO PHE LYS GLU HIS PHE SER SEQRES 13 B 527 ASN ASP LEU PRO VAL GLU LYS LYS GLY THR GLU LEU TYR SEQRES 14 B 527 THR TYR ILE GLN ASN GLU LEU ASN GLU ILE GLU ALA ASP SEQRES 15 B 527 MET TYR GLU PRO ARG GLN ALA PRO PHE GLY ARG ALA ASP SEQRES 16 B 527 LYS ALA ALA ASN TRP LEU LEU ARG ALA ARG LEU TYR LEU SEQRES 17 B 527 ASN ALA GLY VAL TYR THR GLY GLN THR ASP TYR ALA LYS SEQRES 18 B 527 ALA GLU GLU TYR ALA SER LYS VAL ILE GLY SER ALA TYR SEQRES 19 B 527 LYS LEU CYS THR ASN TYR SER GLU LEU PHE MET ALA ASP SEQRES 20 B 527 ASN ASP GLU ASN GLU ASN ALA MET GLN GLU ILE ILE LEU SEQRES 21 B 527 PRO ILE ARG GLN ASP GLY VAL LYS THR ARG ASN TYR GLY SEQRES 22 B 527 GLY SER THR TYR LEU VAL CYS GLY THR ARG VAL ALA GLY SEQRES 23 B 527 MET PRO ARG MET GLY THR THR ASN GLY TRP SER CYS ILE SEQRES 24 B 527 PHE ALA ARG ALA ALA MET VAL GLN LYS PHE PHE SER ASN SEQRES 25 B 527 LEU GLU ASP VAL PRO MET LEU PRO ALA ASP VAL GLU ILE SEQRES 26 B 527 PRO THR LYS GLY LEU ASP THR ASP GLU GLN ILE ASP ALA SEQRES 27 B 527 PHE ASP ALA GLU HIS GLY ILE ARG THR GLU ASP MET ILE SEQRES 28 B 527 LYS ALA ALA GLY ASP ASP ARG ALA LEU LEU TYR SER GLY SEQRES 29 B 527 VAL GLY GLY GLY ARG ARG LYS ILE GLN THR ASP ALA ILE SEQRES 30 B 527 SER GLY PHE THR ASP GLY LEU SER ILE VAL LYS TRP GLN SEQRES 31 B 527 ASN TYR ARG SER ASP GLY LYS PRO VAL SER HIS ALA THR SEQRES 32 B 527 TYR PRO ASP THR ASP ILE PRO LEU PHE ARG LEU ALA GLU SEQRES 33 B 527 ALA TYR LEU THR ARG ALA GLU ALA ILE PHE ARG GLN GLY SEQRES 34 B 527 GLY ASP ALA THR GLY ASP ILE ASN GLU LEU ARG LYS ARG SEQRES 35 B 527 ALA ASN CYS THR ARG LYS VAL GLN THR VAL THR GLU GLN SEQRES 36 B 527 GLU LEU ILE ASP GLU TRP ALA ARG GLU PHE TYR LEU GLU SEQRES 37 B 527 GLY ARG ARG ARG SER ASP LEU VAL ARG PHE GLY MET PHE SEQRES 38 B 527 THR THR ASN LYS TYR LEU TRP ASP TRP LYS GLY GLY ALA SEQRES 39 B 527 MET ASN GLY THR SER VAL ALA SER TYR TYR ASN LYS TYR SEQRES 40 B 527 PRO ILE PRO VAL SER ASP ILE ASN ASN ASN ARG ASN MET SEQRES 41 B 527 SER GLN ASN GLU GLY TYR LYS HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET GLC C 4 11 HET GLC C 5 11 HET GLC C 6 11 HET GLC C 7 11 HET GLC D 1 12 HET GLC D 2 11 HET GLC D 3 11 HET GLC D 4 11 HET GLC D 5 11 HET GLC D 6 11 HET CA A 600 1 HET CA A 710 1 HET EDO A 730 4 HET EDO A 731 4 HET EDO A 736 4 HET EDO A 737 4 HET EDO A 747 4 HET CA B 700 1 HET CA B 720 1 HET EDO B 732 4 HET EDO B 733 4 HET EDO B 734 4 HET EDO B 741 4 HET EDO B 742 4 HET EDO B 744 4 HET EDO B 748 4 HET EDO B 749 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GLC 13(C6 H12 O6) FORMUL 5 CA 4(CA 2+) FORMUL 7 EDO 13(C2 H6 O2) FORMUL 22 HOH *728(H2 O) HELIX 1 1 THR A 38 PHE A 42 5 5 HELIX 2 2 ASP A 43 MET A 54 1 12 HELIX 3 3 ASP A 73 SER A 77 5 5 HELIX 4 4 GLY A 78 LEU A 89 1 12 HELIX 5 5 ASP A 103 SER A 109 1 7 HELIX 6 6 SER A 116 GLU A 141 1 26 HELIX 7 7 ASP A 145 GLY A 171 1 27 HELIX 8 8 GLY A 189 GLU A 204 1 16 HELIX 9 9 ALA A 205 MET A 207 5 3 HELIX 10 10 ASP A 219 GLY A 239 1 21 HELIX 11 11 ASP A 242 GLY A 255 1 14 HELIX 12 12 ASN A 263 MET A 269 5 7 HELIX 13 13 ASN A 275 GLN A 280 1 6 HELIX 14 14 GLY A 298 CYS A 304 1 7 HELIX 15 15 GLY A 305 ARG A 307 5 3 HELIX 16 16 ARG A 326 GLN A 331 1 6 HELIX 17 17 ASN A 336 VAL A 340 5 5 HELIX 18 18 THR A 356 HIS A 367 1 12 HELIX 19 19 ARG A 370 GLY A 379 1 10 HELIX 20 20 GLY A 403 GLY A 407 5 5 HELIX 21 21 LEU A 438 GLN A 452 1 15 HELIX 22 22 ALA A 456 ALA A 467 1 12 HELIX 23 23 THR A 477 TYR A 490 1 14 HELIX 24 24 ARG A 494 PHE A 502 1 9 HELIX 25 25 TRP A 514 ALA A 518 5 5 HELIX 26 26 ALA A 525 LYS A 530 5 6 HELIX 27 27 PRO A 534 ASN A 541 1 8 HELIX 28 28 THR B 38 PHE B 42 5 5 HELIX 29 29 ASP B 43 MET B 54 1 12 HELIX 30 30 ASP B 73 SER B 77 5 5 HELIX 31 31 GLY B 78 LEU B 89 1 12 HELIX 32 32 ASP B 103 SER B 109 1 7 HELIX 33 33 SER B 116 GLU B 141 1 26 HELIX 34 34 ASP B 145 GLY B 171 1 27 HELIX 35 35 GLY B 189 GLU B 204 1 16 HELIX 36 36 ALA B 205 MET B 207 5 3 HELIX 37 37 ASP B 219 ASN B 233 1 15 HELIX 38 38 ASN B 233 GLY B 239 1 7 HELIX 39 39 ASP B 242 GLY B 255 1 14 HELIX 40 40 ASN B 263 MET B 269 5 7 HELIX 41 41 ASN B 275 GLN B 280 1 6 HELIX 42 42 GLY B 298 CYS B 304 1 7 HELIX 43 43 GLY B 305 ARG B 307 5 3 HELIX 44 44 ARG B 326 GLN B 331 1 6 HELIX 45 45 THR B 356 HIS B 367 1 12 HELIX 46 46 ARG B 370 GLY B 379 1 10 HELIX 47 47 GLY B 403 GLY B 407 5 5 HELIX 48 48 LEU B 438 GLN B 452 1 15 HELIX 49 49 ALA B 456 ALA B 467 1 12 HELIX 50 50 THR B 477 TYR B 490 1 14 HELIX 51 51 ARG B 494 PHE B 502 1 9 HELIX 52 52 TRP B 514 ALA B 518 5 5 HELIX 53 53 ALA B 525 LYS B 530 5 6 HELIX 54 54 PRO B 534 ASN B 541 1 8 SHEET 1 A 2 CYS A 94 TRP A 96 0 SHEET 2 A 2 ILE A 323 ALA A 325 -1 O PHE A 324 N LEU A 95 SHEET 1 B 2 LYS A 172 PHE A 175 0 SHEET 2 B 2 VAL A 185 LYS A 188 -1 O VAL A 185 N PHE A 175 SHEET 1 C 2 ILE A 282 ILE A 286 0 SHEET 2 C 2 ILE A 433 ARG A 437 -1 O PHE A 436 N LEU A 284 SHEET 1 D 2 LEU A 385 TYR A 386 0 SHEET 2 D 2 SER A 409 ILE A 410 -1 O SER A 409 N TYR A 386 SHEET 1 E 2 CYS B 94 TRP B 96 0 SHEET 2 E 2 ILE B 323 ALA B 325 -1 O PHE B 324 N LEU B 95 SHEET 1 F 2 LYS B 172 PHE B 175 0 SHEET 2 F 2 VAL B 185 LYS B 188 -1 O VAL B 185 N PHE B 175 SHEET 1 G 2 ILE B 282 ILE B 286 0 SHEET 2 G 2 ILE B 433 ARG B 437 -1 O ILE B 433 N ILE B 286 SHEET 1 H 2 LEU B 385 TYR B 386 0 SHEET 2 H 2 SER B 409 ILE B 410 -1 O SER B 409 N TYR B 386 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.44 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.44 LINK O4 GLC C 3 C1 GLC C 4 1555 1555 1.45 LINK O4 GLC C 4 C1 GLC C 5 1555 1555 1.45 LINK O4 GLC C 5 C1 GLC C 6 1555 1555 1.44 LINK O4 GLC C 6 C1 GLC C 7 1555 1555 1.44 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.45 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.45 LINK O4 GLC D 3 C1 GLC D 4 1555 1555 1.44 LINK O4 GLC D 4 C1 GLC D 5 1555 1555 1.46 LINK O4 GLC D 5 C1 GLC D 6 1555 1555 1.45 LINK OD2 ASP A 273 CA CA A 600 1555 1555 2.28 LINK OE1 GLU A 274 CA CA A 710 1555 1555 2.67 LINK OE2 GLU A 274 CA CA A 710 1555 1555 2.45 LINK O GLN A 288 CA CA A 600 1555 1555 2.39 LINK O ASP A 430 CA CA A 600 1555 1555 2.33 LINK OD1 ASP A 432 CA CA A 600 1555 1555 2.50 LINK CA CA A 600 O HOH A1134 1555 1555 2.61 LINK CA CA A 600 O HOH A1208 1555 1555 2.31 LINK CA CA A 600 O HOH A1214 1555 1555 2.68 LINK CA CA A 710 O1 EDO A 731 1555 1555 2.14 LINK CA CA A 710 O HOH A 984 1555 1555 2.43 LINK CA CA A 710 O HOH A 992 1555 1555 2.27 LINK CA CA A 710 O HOH A1031 1555 1555 2.67 LINK OD2 ASP B 273 CA CA B 700 1555 1555 2.43 LINK OE1 GLU B 274 CA CA B 720 1555 1555 2.57 LINK OE2 GLU B 274 CA CA B 720 1555 1555 2.64 LINK O GLN B 288 CA CA B 700 1555 1555 2.44 LINK O ASP B 430 CA CA B 700 1555 1555 2.45 LINK OD1 ASP B 432 CA CA B 700 1555 1555 2.44 LINK CA CA B 700 O HOH B1053 1555 1555 2.60 LINK CA CA B 700 O HOH B1261 1555 1555 2.65 LINK CA CA B 700 O HOH B1292 1555 1555 2.48 LINK CA CA B 720 O HOH B1182 1555 1555 2.37 LINK CA CA B 720 O HOH B1188 1555 1555 2.11 LINK CA CA B 720 O HOH B1277 1555 1555 2.23 LINK CA CA B 720 O HOH B1278 1555 1555 2.57 CRYST1 59.610 73.220 83.380 65.06 72.19 69.73 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016776 -0.006196 -0.003420 0.00000 SCALE2 0.000000 0.014559 -0.005502 0.00000 SCALE3 0.000000 0.000000 0.013466 0.00000