HEADER LYASE 14-MAR-08 3CKE TITLE CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE IN COMPLEX WITH 12,13- TITLE 2 DIFLUOROFARNESYL DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.2.3.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS TERREUS; SOURCE 3 ORGANISM_TAXID: 33178; SOURCE 4 GENE: ARI1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11-RASA KEYWDS SUBSTRATE BINDING, METAL ION BINDING, CATALYSIS, CONFORMATIONAL KEYWDS 2 CHANGES, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.SHISHOVA,F.YU,D.J.MILLER,J.A.FARALDOS,Y.ZHAO,R.M.COATES, AUTHOR 2 R.K.ALLEMANN,D.E.CANE,D.W.CHRISTIANSON REVDAT 5 30-AUG-23 3CKE 1 REMARK REVDAT 4 13-JUL-11 3CKE 1 VERSN REVDAT 3 24-FEB-09 3CKE 1 VERSN REVDAT 2 17-JUN-08 3CKE 1 JRNL REVDAT 1 01-APR-08 3CKE 0 JRNL AUTH E.Y.SHISHOVA,F.YU,D.J.MILLER,J.A.FARALDOS,Y.ZHAO,R.M.COATES, JRNL AUTH 2 R.K.ALLEMANN,D.E.CANE,D.W.CHRISTIANSON JRNL TITL X-RAY CRYSTALLOGRAPHIC STUDIES OF SUBSTRATE BINDING TO JRNL TITL 2 ARISTOLOCHENE SYNTHASE SUGGEST A METAL ION BINDING SEQUENCE JRNL TITL 3 FOR CATALYSIS. JRNL REF J.BIOL.CHEM. V. 283 15431 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18385128 JRNL DOI 10.1074/JBC.M800659200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 57035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5804 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 56.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2E4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.42100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 SER A 231 REMARK 465 LYS A 232 REMARK 465 THR A 233 REMARK 465 ALA A 234 REMARK 465 HIS A 235 REMARK 465 SER A 236 REMARK 465 GLU A 237 REMARK 465 GLY A 238 REMARK 465 GLY A 239 REMARK 465 ILE A 240 REMARK 465 VAL A 318 REMARK 465 VAL A 319 REMARK 465 ASP A 320 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 LYS B 232 REMARK 465 THR B 233 REMARK 465 ALA B 234 REMARK 465 HIS B 235 REMARK 465 SER B 236 REMARK 465 GLU B 237 REMARK 465 GLY B 238 REMARK 465 GLY B 239 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 ASP B 320 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 PRO C 4 REMARK 465 ASN C 5 REMARK 465 GLY C 6 REMARK 465 THR C 7 REMARK 465 ASN C 8 REMARK 465 GLY C 9 REMARK 465 ALA C 10 REMARK 465 SER C 11 REMARK 465 SER C 12 REMARK 465 SER C 231 REMARK 465 LYS C 232 REMARK 465 THR C 233 REMARK 465 ALA C 234 REMARK 465 HIS C 235 REMARK 465 SER C 236 REMARK 465 GLU C 237 REMARK 465 GLY C 238 REMARK 465 GLY C 239 REMARK 465 ILE C 240 REMARK 465 VAL C 318 REMARK 465 VAL C 319 REMARK 465 ASP C 320 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 LYS D 3 REMARK 465 PRO D 4 REMARK 465 ASN D 5 REMARK 465 GLY D 6 REMARK 465 THR D 7 REMARK 465 ASN D 8 REMARK 465 GLY D 9 REMARK 465 ALA D 10 REMARK 465 SER D 11 REMARK 465 SER D 12 REMARK 465 ASN D 45 REMARK 465 PHE D 46 REMARK 465 PRO D 47 REMARK 465 ASN D 48 REMARK 465 GLU D 49 REMARK 465 PHE D 55 REMARK 465 TYR D 95 REMARK 465 MET D 96 REMARK 465 SER D 97 REMARK 465 ALA D 163 REMARK 465 THR D 230 REMARK 465 SER D 231 REMARK 465 LYS D 232 REMARK 465 THR D 233 REMARK 465 ALA D 234 REMARK 465 HIS D 235 REMARK 465 SER D 236 REMARK 465 GLU D 237 REMARK 465 GLY D 238 REMARK 465 GLY D 239 REMARK 465 ILE D 240 REMARK 465 VAL D 318 REMARK 465 VAL D 319 REMARK 465 ASP D 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 -118.04 -149.31 REMARK 500 PHE A 68 55.87 -119.38 REMARK 500 ARG A 120 -14.52 -41.23 REMARK 500 PRO A 123 -69.48 -29.56 REMARK 500 ASP A 139 68.09 -166.34 REMARK 500 LEU A 228 43.26 -81.00 REMARK 500 TYR A 229 -165.25 -107.46 REMARK 500 CYS A 242 80.61 -157.78 REMARK 500 GLU B 35 -76.55 -52.77 REMARK 500 PRO B 47 -90.63 -54.78 REMARK 500 ASN B 48 -169.41 -114.39 REMARK 500 ARG B 120 -13.04 -44.49 REMARK 500 PRO B 123 -70.74 -43.88 REMARK 500 ASP B 139 88.02 -162.25 REMARK 500 TYR B 229 -5.33 -141.10 REMARK 500 THR B 230 89.43 -18.66 REMARK 500 LEU C 24 123.98 -173.63 REMARK 500 LEU C 28 2.83 -69.91 REMARK 500 GLU C 35 -85.93 -60.58 REMARK 500 PRO C 47 -82.20 -51.88 REMARK 500 ASN C 48 -139.57 -113.84 REMARK 500 ASP C 74 44.78 -106.54 REMARK 500 ARG C 75 -15.88 -160.57 REMARK 500 ASP C 119 105.90 -57.03 REMARK 500 PRO C 123 -76.67 -40.74 REMARK 500 ASP C 139 74.65 -151.78 REMARK 500 ASP C 178 120.08 -34.47 REMARK 500 TYR C 229 16.98 -169.45 REMARK 500 LEU C 286 150.00 -35.62 REMARK 500 THR C 288 156.53 -40.02 REMARK 500 TYR D 39 -73.52 -78.51 REMARK 500 GLN D 42 -38.52 -174.43 REMARK 500 LYS D 53 -10.76 -170.97 REMARK 500 ALA D 57 -17.24 -49.66 REMARK 500 PHE D 68 59.18 -113.18 REMARK 500 ASP D 91 -100.93 -115.37 REMARK 500 LEU D 92 -93.85 4.21 REMARK 500 LEU D 93 -7.69 -57.79 REMARK 500 GLU D 99 30.98 11.73 REMARK 500 GLU D 100 33.59 -178.65 REMARK 500 ARG D 120 -5.39 -52.50 REMARK 500 ASP D 139 97.85 -173.82 REMARK 500 GLN D 157 107.51 53.59 REMARK 500 THR D 158 11.47 -165.21 REMARK 500 ASP D 159 102.40 92.43 REMARK 500 ARG D 160 70.75 -168.56 REMARK 500 THR D 312 123.95 -39.19 REMARK 500 SER D 316 84.77 53.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 90 OD1 REMARK 620 2 ASP D 90 OD2 55.1 REMARK 620 3 POP D5963 O2 141.7 96.8 REMARK 620 4 HOH D6004 O 61.2 116.3 136.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 219 OD1 REMARK 620 2 SER D 223 OG 90.7 REMARK 620 3 GLU D 227 OE2 156.5 112.0 REMARK 620 4 POP D5963 O1 95.1 170.0 63.4 REMARK 620 5 POP D5963 O4 86.2 96.9 96.6 75.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME D 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDF A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDF B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDF C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP D 5963 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2647 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BNX RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH FARNEYSL DIPHOSPHATE REMARK 900 RELATED ID: 3BNY RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 2-FLUOROFARNEYSL DIPHOSPHATE DBREF 3CKE A 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 DBREF 3CKE B 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 DBREF 3CKE C 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 DBREF 3CKE D 1 320 UNP Q9UR08 Q9UR08_ASPTE 1 320 SEQRES 1 A 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 A 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 A 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 A 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 A 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 A 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 A 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 A 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 A 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 A 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 A 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 A 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 A 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 A 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 A 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 A 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 A 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 A 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 A 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 A 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 A 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 A 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 A 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 A 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 A 320 LEU ARG TYR SER VAL VAL VAL ASP SEQRES 1 B 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 B 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 B 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 B 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 B 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 B 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 B 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 B 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 B 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 B 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 B 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 B 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 B 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 B 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 B 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 B 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 B 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 B 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 B 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 B 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 B 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 B 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 B 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 B 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 B 320 LEU ARG TYR SER VAL VAL VAL ASP SEQRES 1 C 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 C 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 C 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 C 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 C 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 C 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 C 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 C 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 C 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 C 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 C 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 C 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 C 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 C 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 C 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 C 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 C 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 C 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 C 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 C 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 C 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 C 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 C 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 C 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 C 320 LEU ARG TYR SER VAL VAL VAL ASP SEQRES 1 D 320 MET LYS LYS PRO ASN GLY THR ASN GLY ALA SER SER SER SEQRES 2 D 320 LEU GLU PRO PRO PRO SER THR PHE GLN PRO LEU CYS HIS SEQRES 3 D 320 PRO LEU VAL GLU GLU VAL SER LYS GLU VAL ASP GLY TYR SEQRES 4 D 320 PHE LEU GLN HIS TRP ASN PHE PRO ASN GLU LYS ALA ARG SEQRES 5 D 320 LYS LYS PHE VAL ALA ALA GLY PHE SER ARG VAL THR CYS SEQRES 6 D 320 LEU TYR PHE PRO LYS ALA LEU ASP ASP ARG ILE HIS PHE SEQRES 7 D 320 ALA CYS ARG LEU LEU THR VAL LEU PHE LEU ILE ASP ASP SEQRES 8 D 320 LEU LEU GLU TYR MET SER PHE GLU GLU GLY SER ALA TYR SEQRES 9 D 320 ASN GLU LYS LEU ILE PRO ILE SER ARG GLY ASP VAL LEU SEQRES 10 D 320 PRO ASP ARG SER ILE PRO VAL GLU TYR ILE ILE TYR ASP SEQRES 11 D 320 LEU TRP GLU SER MET ARG ALA HIS ASP ARG GLU MET ALA SEQRES 12 D 320 ASP GLU ILE LEU GLU PRO VAL PHE LEU PHE MET ARG ALA SEQRES 13 D 320 GLN THR ASP ARG THR ARG ALA ARG PRO MET GLY LEU GLY SEQRES 14 D 320 GLY TYR LEU GLU TYR ARG GLU ARG ASP VAL GLY LYS GLU SEQRES 15 D 320 LEU LEU ALA ALA LEU MET ARG PHE SER MET GLY LEU LYS SEQRES 16 D 320 LEU SER PRO SER GLU LEU GLN ARG VAL ARG GLU ILE ASP SEQRES 17 D 320 ALA ASN CYS SER LYS HIS LEU SER VAL VAL ASN ASP ILE SEQRES 18 D 320 TYR SER TYR GLU LYS GLU LEU TYR THR SER LYS THR ALA SEQRES 19 D 320 HIS SER GLU GLY GLY ILE LEU CYS THR SER VAL GLN ILE SEQRES 20 D 320 LEU ALA GLN GLU ALA ASP VAL THR ALA GLU ALA ALA LYS SEQRES 21 D 320 ARG VAL LEU PHE VAL MET CYS ARG GLU TRP GLU LEU ARG SEQRES 22 D 320 HIS GLN LEU LEU VAL ALA ARG LEU SER ALA GLU GLY LEU SEQRES 23 D 320 GLU THR PRO GLY LEU ALA ALA TYR VAL GLU GLY LEU GLU SEQRES 24 D 320 TYR GLN MET SER GLY ASN GLU LEU TRP SER GLN THR THR SEQRES 25 D 320 LEU ARG TYR SER VAL VAL VAL ASP HET CL A 500 1 HET FDF A 400 26 HET BME B1271 4 HET FDF B 401 26 HET FDF C 402 26 HET GOL C2647 6 HET MG D 701 1 HET MG D 702 1 HET BME D1272 4 HET POP D5963 9 HETNAM CL CHLORIDE ION HETNAM FDF (2E,6E)-12-FLUORO-11-(FLUOROMETHYL)-3,7-DIMETHYLDODECA- HETNAM 2 FDF 2,6,10-TRIEN-1-YL TRIHYDROGEN DIPHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM POP PYROPHOSPHATE 2- HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL CL 1- FORMUL 6 FDF 3(C15 H26 F2 O7 P2) FORMUL 7 BME 2(C2 H6 O S) FORMUL 10 GOL C3 H8 O3 FORMUL 11 MG 2(MG 2+) FORMUL 14 POP H2 O7 P2 2- FORMUL 15 HOH *243(H2 O) HELIX 1 1 LEU A 28 TRP A 44 1 17 HELIX 2 2 GLU A 49 GLY A 59 1 11 HELIX 3 3 GLY A 59 PHE A 68 1 10 HELIX 4 4 ARG A 75 GLU A 94 1 20 HELIX 5 5 SER A 97 ARG A 113 1 17 HELIX 6 6 ILE A 122 ILE A 146 1 25 HELIX 7 7 ILE A 146 ARG A 155 1 10 HELIX 8 8 GLY A 167 ARG A 177 1 11 HELIX 9 9 ASP A 178 GLY A 193 1 16 HELIX 10 10 SER A 197 VAL A 204 1 8 HELIX 11 11 VAL A 204 LEU A 228 1 25 HELIX 12 12 THR A 243 ASP A 253 1 11 HELIX 13 13 THR A 255 GLU A 284 1 30 HELIX 14 14 THR A 288 THR A 312 1 25 HELIX 15 15 LEU B 28 TRP B 44 1 17 HELIX 16 16 ASN B 48 GLY B 59 1 12 HELIX 17 17 GLY B 59 PHE B 68 1 10 HELIX 18 18 ARG B 75 TYR B 95 1 21 HELIX 19 19 SER B 97 GLY B 114 1 18 HELIX 20 20 ILE B 122 ASP B 139 1 18 HELIX 21 21 ASP B 139 ILE B 146 1 8 HELIX 22 22 ILE B 146 GLN B 157 1 12 HELIX 23 23 GLY B 167 GLU B 176 1 10 HELIX 24 24 ASP B 178 MET B 192 1 15 HELIX 25 25 SER B 197 ARG B 203 1 7 HELIX 26 26 VAL B 204 LEU B 228 1 25 HELIX 27 27 THR B 243 ASP B 253 1 11 HELIX 28 28 THR B 255 GLU B 284 1 30 HELIX 29 29 THR B 288 THR B 312 1 25 HELIX 30 30 LEU B 313 SER B 316 5 4 HELIX 31 31 LEU C 28 TRP C 44 1 17 HELIX 32 32 GLU C 49 GLY C 59 1 11 HELIX 33 33 GLY C 59 PHE C 68 1 10 HELIX 34 34 ARG C 75 GLU C 94 1 20 HELIX 35 35 SER C 97 GLY C 114 1 18 HELIX 36 36 ILE C 122 ILE C 146 1 25 HELIX 37 37 ILE C 146 GLN C 157 1 12 HELIX 38 38 GLY C 167 GLU C 176 1 10 HELIX 39 39 ASP C 178 MET C 192 1 15 HELIX 40 40 SER C 197 VAL C 204 1 8 HELIX 41 41 VAL C 204 LEU C 228 1 25 HELIX 42 42 THR C 243 ASP C 253 1 11 HELIX 43 43 THR C 255 GLU C 284 1 30 HELIX 44 44 THR C 288 THR C 312 1 25 HELIX 45 45 LEU C 313 SER C 316 5 4 HELIX 46 46 LEU D 28 LEU D 41 1 14 HELIX 47 47 GLY D 59 PHE D 68 1 10 HELIX 48 48 ARG D 75 ASP D 91 1 17 HELIX 49 49 GLY D 101 LYS D 107 1 7 HELIX 50 50 LEU D 108 GLY D 114 1 7 HELIX 51 51 ILE D 122 ASP D 139 1 18 HELIX 52 52 ASP D 139 ALA D 156 1 18 HELIX 53 53 GLY D 167 ARG D 177 1 11 HELIX 54 54 ASP D 178 MET D 192 1 15 HELIX 55 55 SER D 197 GLN D 202 1 6 HELIX 56 56 VAL D 204 SER D 223 1 20 HELIX 57 57 SER D 223 TYR D 229 1 7 HELIX 58 58 THR D 243 ASP D 253 1 11 HELIX 59 59 THR D 255 GLU D 284 1 30 HELIX 60 60 THR D 288 THR D 312 1 25 HELIX 61 61 LEU D 313 SER D 316 5 4 LINK OD1 ASP D 90 MG MG D 702 1555 1555 2.37 LINK OD2 ASP D 90 MG MG D 702 1555 1555 2.36 LINK OD1 ASN D 219 MG MG D 701 1555 1555 2.35 LINK OG SER D 223 MG MG D 701 1555 1555 2.30 LINK OE2 GLU D 227 MG MG D 701 1555 1555 2.30 LINK MG MG D 701 O1 POP D5963 1555 1555 2.29 LINK MG MG D 701 O4 POP D5963 1555 1555 2.43 LINK MG MG D 702 O2 POP D5963 1555 1555 2.31 LINK MG MG D 702 O HOH D6004 1555 1555 2.29 SITE 1 AC1 3 ASN D 219 SER D 223 GLU D 227 SITE 1 AC2 1 ASP D 90 SITE 1 AC3 2 ARG A 273 THR D 255 SITE 1 AC4 5 PRO C 27 GLU C 30 CYS D 25 ARG D 62 SITE 2 AC4 5 CYS D 65 SITE 1 AC5 10 TYR A 67 PHE A 87 ASP A 90 PHE A 153 SITE 2 AC5 10 LEU A 184 ASN A 219 ASN A 305 TRP A 308 SITE 3 AC5 10 ARG A 314 TYR A 315 SITE 1 AC6 6 TYR B 67 ASP B 90 PHE B 153 LEU B 184 SITE 2 AC6 6 ASN B 305 ARG B 314 SITE 1 AC7 10 LEU C 83 PHE C 87 ASP C 90 PHE C 153 SITE 2 AC7 10 GLN C 157 GLY C 180 LEU C 184 ASN C 219 SITE 3 AC7 10 ARG C 314 TYR C 315 SITE 1 AC8 6 ASP D 90 ASN D 219 SER D 223 GLU D 227 SITE 2 AC8 6 ARG D 314 TYR D 315 SITE 1 AC9 4 PHE C 60 TRP C 308 THR C 312 ARG C 314 CRYST1 61.534 146.842 84.110 90.00 97.87 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016251 0.000000 0.002246 0.00000 SCALE2 0.000000 0.006810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012002 0.00000