HEADER LYASE 19-MAR-08 3CLI TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA ALLENE OXIDE SYNTHASE (AOS, TITLE 2 CYTOCHROME P450 74A, CYP74A) AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLENE OXIDE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOCHROME P450 74A, CHLOROPLAST; HYDROPEROXIDE DEHYDRASE; COMPND 5 EC: 4.2.1.92; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AOS, CYP74A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCWORI+ KEYWDS P450 FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.-S.LEE,P.NIOCHE,C.S.RAMAN REVDAT 4 21-FEB-24 3CLI 1 REMARK SEQADV REVDAT 3 13-JUL-11 3CLI 1 VERSN REVDAT 2 23-DEC-08 3CLI 1 JRNL VERSN REVDAT 1 19-AUG-08 3CLI 0 JRNL AUTH D.-S.LEE,P.NIOCHE,M.HAMBERG,C.S.RAMAN JRNL TITL STRUCTURAL INSIGHTS INTO THE EVOLUTIONARY PATHS OF OXYLIPIN JRNL TITL 2 BIOSYNTHETIC ENZYMES JRNL REF NATURE V. 455 363 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18716621 JRNL DOI 10.1038/NATURE07307 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 95613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6861 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 380 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 647 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7835 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10645 ; 1.372 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 956 ; 5.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 354 ;37.141 ;23.446 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1336 ;13.550 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;17.439 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1130 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6020 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3691 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5406 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 565 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4862 ; 0.901 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7641 ; 1.403 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3385 ; 2.425 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3000 ; 3.737 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2444 31.2198 31.9184 REMARK 3 T TENSOR REMARK 3 T11: -0.0492 T22: -0.0707 REMARK 3 T33: -0.0551 T12: 0.0117 REMARK 3 T13: 0.0187 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.6082 L22: 0.5997 REMARK 3 L33: 0.6855 L12: -0.0456 REMARK 3 L13: 0.2260 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0120 S13: -0.0517 REMARK 3 S21: 0.0397 S22: -0.0092 S23: 0.0348 REMARK 3 S31: 0.0704 S32: 0.0243 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8050 59.9532 3.3868 REMARK 3 T TENSOR REMARK 3 T11: -0.0629 T22: -0.0636 REMARK 3 T33: -0.0800 T12: -0.0099 REMARK 3 T13: -0.0096 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.7196 L22: 0.7043 REMARK 3 L33: 0.7947 L12: -0.2553 REMARK 3 L13: -0.0537 L23: 0.1251 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.0000 S13: 0.0127 REMARK 3 S21: 0.0516 S22: 0.0067 S23: -0.0447 REMARK 3 S31: 0.0117 S32: -0.0556 S33: -0.0116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000046920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, TRIS-HCL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.81950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.14750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.59600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.14750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.81950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.59600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 LYS A 31 REMARK 465 THR A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 THR A 38 REMARK 465 PRO A 39 REMARK 465 ASP A 40 REMARK 465 LEU A 41 REMARK 465 THR A 42 REMARK 465 VAL A 43 REMARK 465 ALA A 44 REMARK 465 THR A 45 REMARK 465 ARG A 46 REMARK 465 THR A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 ASP A 51 REMARK 465 SER A 517 REMARK 465 PHE A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 MET B 28 REMARK 465 ALA B 29 REMARK 465 LYS B 30 REMARK 465 LYS B 31 REMARK 465 THR B 32 REMARK 465 SER B 33 REMARK 465 SER B 34 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 GLU B 37 REMARK 465 THR B 38 REMARK 465 PRO B 39 REMARK 465 ASP B 40 REMARK 465 LEU B 41 REMARK 465 THR B 42 REMARK 465 VAL B 43 REMARK 465 ALA B 44 REMARK 465 THR B 45 REMARK 465 ARG B 46 REMARK 465 THR B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 LYS B 50 REMARK 465 ASP B 51 REMARK 465 SER B 517 REMARK 465 PHE B 518 REMARK 465 HIS B 519 REMARK 465 HIS B 520 REMARK 465 HIS B 521 REMARK 465 HIS B 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 93 O HOH B 1157 2.09 REMARK 500 OE2 GLU A 498 O HOH A 799 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 353 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 353 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 65 -60.71 62.25 REMARK 500 ALA A 105 -131.18 50.80 REMARK 500 LYS A 236 -120.01 49.70 REMARK 500 SER A 403 -163.17 -100.17 REMARK 500 SER A 403 -166.59 -107.46 REMARK 500 ILE B 65 -59.10 64.77 REMARK 500 ALA B 105 -134.02 54.27 REMARK 500 LYS B 236 -120.39 50.85 REMARK 500 ILE B 257 -157.16 -94.66 REMARK 500 SER B 403 -169.20 -100.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 600 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 471 SG REMARK 620 2 HEM A 600 NA 103.1 REMARK 620 3 HEM A 600 NB 91.3 89.6 REMARK 620 4 HEM A 600 NC 89.5 167.3 88.4 REMARK 620 5 HEM A 600 ND 103.0 87.9 165.7 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 600 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 471 SG REMARK 620 2 HEM B 600 NA 105.6 REMARK 620 3 HEM B 600 NB 94.3 88.0 REMARK 620 4 HEM B 600 NC 93.5 160.7 87.9 REMARK 620 5 HEM B 600 ND 104.9 88.3 160.8 89.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1001 DBREF 3CLI A 34 518 UNP Q96242 CP74A_ARATH 34 518 DBREF 3CLI B 34 518 UNP Q96242 CP74A_ARATH 34 518 SEQADV 3CLI MET A 28 UNP Q96242 EXPRESSION TAG SEQADV 3CLI ALA A 29 UNP Q96242 EXPRESSION TAG SEQADV 3CLI LYS A 30 UNP Q96242 EXPRESSION TAG SEQADV 3CLI LYS A 31 UNP Q96242 EXPRESSION TAG SEQADV 3CLI THR A 32 UNP Q96242 EXPRESSION TAG SEQADV 3CLI SER A 33 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS A 519 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS A 520 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS A 521 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS A 522 UNP Q96242 EXPRESSION TAG SEQADV 3CLI MET B 28 UNP Q96242 EXPRESSION TAG SEQADV 3CLI ALA B 29 UNP Q96242 EXPRESSION TAG SEQADV 3CLI LYS B 30 UNP Q96242 EXPRESSION TAG SEQADV 3CLI LYS B 31 UNP Q96242 EXPRESSION TAG SEQADV 3CLI THR B 32 UNP Q96242 EXPRESSION TAG SEQADV 3CLI SER B 33 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS B 519 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS B 520 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS B 521 UNP Q96242 EXPRESSION TAG SEQADV 3CLI HIS B 522 UNP Q96242 EXPRESSION TAG SEQRES 1 A 495 MET ALA LYS LYS THR SER SER GLY SER GLU THR PRO ASP SEQRES 2 A 495 LEU THR VAL ALA THR ARG THR GLY SER LYS ASP LEU PRO SEQRES 3 A 495 ILE ARG ASN ILE PRO GLY ASN TYR GLY LEU PRO ILE VAL SEQRES 4 A 495 GLY PRO ILE LYS ASP ARG TRP ASP TYR PHE TYR ASP GLN SEQRES 5 A 495 GLY ALA GLU GLU PHE PHE LYS SER ARG ILE ARG LYS TYR SEQRES 6 A 495 ASN SER THR VAL TYR ARG VAL ASN MET PRO PRO GLY ALA SEQRES 7 A 495 PHE ILE ALA GLU ASN PRO GLN VAL VAL ALA LEU LEU ASP SEQRES 8 A 495 GLY LYS SER PHE PRO VAL LEU PHE ASP VAL ASP LYS VAL SEQRES 9 A 495 GLU LYS LYS ASP LEU PHE THR GLY THR TYR MET PRO SER SEQRES 10 A 495 THR GLU LEU THR GLY GLY TYR ARG ILE LEU SER TYR LEU SEQRES 11 A 495 ASP PRO SER GLU PRO LYS HIS GLU LYS LEU LYS ASN LEU SEQRES 12 A 495 LEU PHE PHE LEU LEU LYS SER SER ARG ASN ARG ILE PHE SEQRES 13 A 495 PRO GLU PHE GLN ALA THR TYR SER GLU LEU PHE ASP SER SEQRES 14 A 495 LEU GLU LYS GLU LEU SER LEU LYS GLY LYS ALA ASP PHE SEQRES 15 A 495 GLY GLY SER SER ASP GLY THR ALA PHE ASN PHE LEU ALA SEQRES 16 A 495 ARG ALA PHE TYR GLY THR ASN PRO ALA ASP THR LYS LEU SEQRES 17 A 495 LYS ALA ASP ALA PRO GLY LEU ILE THR LYS TRP VAL LEU SEQRES 18 A 495 PHE ASN LEU HIS PRO LEU LEU SER ILE GLY LEU PRO ARG SEQRES 19 A 495 VAL ILE GLU GLU PRO LEU ILE HIS THR PHE SER LEU PRO SEQRES 20 A 495 PRO ALA LEU VAL LYS SER ASP TYR GLN ARG LEU TYR GLU SEQRES 21 A 495 PHE PHE LEU GLU SER ALA GLY GLU ILE LEU VAL GLU ALA SEQRES 22 A 495 ASP LYS LEU GLY ILE SER ARG GLU GLU ALA THR HIS ASN SEQRES 23 A 495 LEU LEU PHE ALA THR CYS PHE ASN THR TRP GLY GLY MET SEQRES 24 A 495 LYS ILE LEU PHE PRO ASN MET VAL LYS ARG ILE GLY ARG SEQRES 25 A 495 ALA GLY HIS GLN VAL HIS ASN ARG LEU ALA GLU GLU ILE SEQRES 26 A 495 ARG SER VAL ILE LYS SER ASN GLY GLY GLU LEU THR MET SEQRES 27 A 495 GLY ALA ILE GLU LYS MET GLU LEU THR LYS SER VAL VAL SEQRES 28 A 495 TYR GLU CYS LEU ARG PHE GLU PRO PRO VAL THR ALA GLN SEQRES 29 A 495 TYR GLY ARG ALA LYS LYS ASP LEU VAL ILE GLU SER HIS SEQRES 30 A 495 ASP ALA ALA PHE LYS VAL LYS ALA GLY GLU MET LEU TYR SEQRES 31 A 495 GLY TYR GLN PRO LEU ALA THR ARG ASP PRO LYS ILE PHE SEQRES 32 A 495 ASP ARG ALA ASP GLU PHE VAL PRO GLU ARG PHE VAL GLY SEQRES 33 A 495 GLU GLU GLY GLU LYS LEU LEU ARG HIS VAL LEU TRP SER SEQRES 34 A 495 ASN GLY PRO GLU THR GLU THR PRO THR VAL GLY ASN LYS SEQRES 35 A 495 GLN CYS ALA GLY LYS ASP PHE VAL VAL LEU VAL ALA ARG SEQRES 36 A 495 LEU PHE VAL ILE GLU ILE PHE ARG ARG TYR ASP SER PHE SEQRES 37 A 495 ASP ILE GLU VAL GLY THR SER PRO LEU GLY SER SER VAL SEQRES 38 A 495 ASN PHE SER SER LEU ARG LYS ALA SER PHE HIS HIS HIS SEQRES 39 A 495 HIS SEQRES 1 B 495 MET ALA LYS LYS THR SER SER GLY SER GLU THR PRO ASP SEQRES 2 B 495 LEU THR VAL ALA THR ARG THR GLY SER LYS ASP LEU PRO SEQRES 3 B 495 ILE ARG ASN ILE PRO GLY ASN TYR GLY LEU PRO ILE VAL SEQRES 4 B 495 GLY PRO ILE LYS ASP ARG TRP ASP TYR PHE TYR ASP GLN SEQRES 5 B 495 GLY ALA GLU GLU PHE PHE LYS SER ARG ILE ARG LYS TYR SEQRES 6 B 495 ASN SER THR VAL TYR ARG VAL ASN MET PRO PRO GLY ALA SEQRES 7 B 495 PHE ILE ALA GLU ASN PRO GLN VAL VAL ALA LEU LEU ASP SEQRES 8 B 495 GLY LYS SER PHE PRO VAL LEU PHE ASP VAL ASP LYS VAL SEQRES 9 B 495 GLU LYS LYS ASP LEU PHE THR GLY THR TYR MET PRO SER SEQRES 10 B 495 THR GLU LEU THR GLY GLY TYR ARG ILE LEU SER TYR LEU SEQRES 11 B 495 ASP PRO SER GLU PRO LYS HIS GLU LYS LEU LYS ASN LEU SEQRES 12 B 495 LEU PHE PHE LEU LEU LYS SER SER ARG ASN ARG ILE PHE SEQRES 13 B 495 PRO GLU PHE GLN ALA THR TYR SER GLU LEU PHE ASP SER SEQRES 14 B 495 LEU GLU LYS GLU LEU SER LEU LYS GLY LYS ALA ASP PHE SEQRES 15 B 495 GLY GLY SER SER ASP GLY THR ALA PHE ASN PHE LEU ALA SEQRES 16 B 495 ARG ALA PHE TYR GLY THR ASN PRO ALA ASP THR LYS LEU SEQRES 17 B 495 LYS ALA ASP ALA PRO GLY LEU ILE THR LYS TRP VAL LEU SEQRES 18 B 495 PHE ASN LEU HIS PRO LEU LEU SER ILE GLY LEU PRO ARG SEQRES 19 B 495 VAL ILE GLU GLU PRO LEU ILE HIS THR PHE SER LEU PRO SEQRES 20 B 495 PRO ALA LEU VAL LYS SER ASP TYR GLN ARG LEU TYR GLU SEQRES 21 B 495 PHE PHE LEU GLU SER ALA GLY GLU ILE LEU VAL GLU ALA SEQRES 22 B 495 ASP LYS LEU GLY ILE SER ARG GLU GLU ALA THR HIS ASN SEQRES 23 B 495 LEU LEU PHE ALA THR CYS PHE ASN THR TRP GLY GLY MET SEQRES 24 B 495 LYS ILE LEU PHE PRO ASN MET VAL LYS ARG ILE GLY ARG SEQRES 25 B 495 ALA GLY HIS GLN VAL HIS ASN ARG LEU ALA GLU GLU ILE SEQRES 26 B 495 ARG SER VAL ILE LYS SER ASN GLY GLY GLU LEU THR MET SEQRES 27 B 495 GLY ALA ILE GLU LYS MET GLU LEU THR LYS SER VAL VAL SEQRES 28 B 495 TYR GLU CYS LEU ARG PHE GLU PRO PRO VAL THR ALA GLN SEQRES 29 B 495 TYR GLY ARG ALA LYS LYS ASP LEU VAL ILE GLU SER HIS SEQRES 30 B 495 ASP ALA ALA PHE LYS VAL LYS ALA GLY GLU MET LEU TYR SEQRES 31 B 495 GLY TYR GLN PRO LEU ALA THR ARG ASP PRO LYS ILE PHE SEQRES 32 B 495 ASP ARG ALA ASP GLU PHE VAL PRO GLU ARG PHE VAL GLY SEQRES 33 B 495 GLU GLU GLY GLU LYS LEU LEU ARG HIS VAL LEU TRP SER SEQRES 34 B 495 ASN GLY PRO GLU THR GLU THR PRO THR VAL GLY ASN LYS SEQRES 35 B 495 GLN CYS ALA GLY LYS ASP PHE VAL VAL LEU VAL ALA ARG SEQRES 36 B 495 LEU PHE VAL ILE GLU ILE PHE ARG ARG TYR ASP SER PHE SEQRES 37 B 495 ASP ILE GLU VAL GLY THR SER PRO LEU GLY SER SER VAL SEQRES 38 B 495 ASN PHE SER SER LEU ARG LYS ALA SER PHE HIS HIS HIS SEQRES 39 B 495 HIS HET HEM A 600 43 HET HEM B 600 43 HET GOL B1001 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *647(H2 O) HELIX 1 1 ILE A 65 TYR A 77 1 13 HELIX 2 2 GLY A 80 ASN A 93 1 14 HELIX 3 3 SER A 121 ASP A 127 5 7 HELIX 4 4 SER A 144 GLY A 149 5 6 HELIX 5 5 ILE A 153 LEU A 157 5 5 HELIX 6 6 GLU A 161 SER A 178 1 18 HELIX 7 7 ARG A 181 GLY A 205 1 25 HELIX 8 8 PHE A 209 GLY A 227 1 19 HELIX 9 9 ASN A 229 THR A 233 5 5 HELIX 10 10 ASP A 238 HIS A 252 1 15 HELIX 11 11 PRO A 253 LEU A 255 5 3 HELIX 12 12 PRO A 260 HIS A 269 1 10 HELIX 13 13 PRO A 274 LEU A 277 5 4 HELIX 14 14 VAL A 278 ALA A 293 1 16 HELIX 15 15 ALA A 293 LEU A 303 1 11 HELIX 16 16 SER A 306 PHE A 320 1 15 HELIX 17 17 ASN A 321 GLY A 341 1 21 HELIX 18 18 GLY A 341 ASN A 359 1 19 HELIX 19 19 THR A 364 LYS A 370 1 7 HELIX 20 20 MET A 371 GLU A 385 1 15 HELIX 21 21 GLN A 420 ARG A 425 1 6 HELIX 22 22 VAL A 442 LEU A 449 1 8 HELIX 23 23 LEU A 450 VAL A 453 5 4 HELIX 24 24 GLY A 473 ARG A 491 1 19 HELIX 25 25 ILE B 65 TYR B 77 1 13 HELIX 26 26 GLY B 80 ASN B 93 1 14 HELIX 27 27 SER B 121 ASP B 127 5 7 HELIX 28 28 SER B 144 GLY B 149 5 6 HELIX 29 29 ILE B 153 LEU B 157 5 5 HELIX 30 30 GLU B 161 SER B 178 1 18 HELIX 31 31 ARG B 181 GLY B 205 1 25 HELIX 32 32 PHE B 209 GLY B 227 1 19 HELIX 33 33 ASN B 229 THR B 233 5 5 HELIX 34 34 ASP B 238 HIS B 252 1 15 HELIX 35 35 PRO B 253 LEU B 255 5 3 HELIX 36 36 PRO B 260 HIS B 269 1 10 HELIX 37 37 PRO B 274 LEU B 277 5 4 HELIX 38 38 VAL B 278 ALA B 293 1 16 HELIX 39 39 ALA B 293 GLY B 304 1 12 HELIX 40 40 SER B 306 PHE B 320 1 15 HELIX 41 41 ASN B 321 GLY B 341 1 21 HELIX 42 42 GLY B 341 ASN B 359 1 19 HELIX 43 43 THR B 364 MET B 371 1 8 HELIX 44 44 MET B 371 GLU B 385 1 15 HELIX 45 45 GLN B 420 ARG B 425 1 6 HELIX 46 46 VAL B 442 LEU B 449 1 8 HELIX 47 47 LEU B 450 VAL B 453 5 4 HELIX 48 48 GLY B 473 ARG B 491 1 19 SHEET 1 A 5 VAL A 96 ASN A 100 0 SHEET 2 A 5 GLN A 112 LEU A 116 -1 O ALA A 115 N TYR A 97 SHEET 3 A 5 MET A 415 TYR A 419 1 O TYR A 417 N LEU A 116 SHEET 4 A 5 ALA A 390 ALA A 395 -1 N GLY A 393 O LEU A 416 SHEET 5 A 5 VAL A 131 GLU A 132 -1 N GLU A 132 O ARG A 394 SHEET 1 B 3 ALA A 207 ASP A 208 0 SHEET 2 B 3 SER A 506 LYS A 515 -1 O PHE A 510 N ALA A 207 SHEET 3 B 3 TYR A 492 THR A 501 -1 N GLU A 498 O ASN A 509 SHEET 1 C 2 LEU A 399 GLU A 402 0 SHEET 2 C 2 ALA A 407 VAL A 410 -1 O PHE A 408 N ILE A 401 SHEET 1 D 3 ILE B 54 ARG B 55 0 SHEET 2 D 3 ALA B 407 VAL B 410 1 O ALA B 407 N ARG B 55 SHEET 3 D 3 LEU B 399 GLU B 402 -1 N LEU B 399 O VAL B 410 SHEET 1 E 5 VAL B 96 ASN B 100 0 SHEET 2 E 5 GLN B 112 LEU B 116 -1 O ALA B 115 N TYR B 97 SHEET 3 E 5 MET B 415 TYR B 419 1 O TYR B 417 N LEU B 116 SHEET 4 E 5 ALA B 390 ALA B 395 -1 N GLY B 393 O LEU B 416 SHEET 5 E 5 VAL B 131 GLU B 132 -1 N GLU B 132 O ARG B 394 SHEET 1 F 3 ALA B 207 ASP B 208 0 SHEET 2 F 3 SER B 507 LYS B 515 -1 O PHE B 510 N ALA B 207 SHEET 3 F 3 TYR B 492 GLY B 500 -1 N GLY B 500 O SER B 507 LINK SG CYS A 471 FE HEM A 600 1555 1555 2.45 LINK SG CYS B 471 FE HEM B 600 1555 1555 2.35 CISPEP 1 PRO A 102 PRO A 103 0 3.34 CISPEP 2 PRO B 102 PRO B 103 0 4.69 SITE 1 AC1 19 LYS A 133 PHE A 137 LEU A 154 HIS A 164 SITE 2 AC1 19 LYS A 168 LEU A 171 ASN A 321 THR A 322 SITE 3 AC1 19 GLY A 325 PRO A 387 GLN A 391 TRP A 455 SITE 4 AC1 19 ASN A 457 ASN A 468 LYS A 469 CYS A 471 SITE 5 AC1 19 ALA A 472 GLY A 473 PHE A 476 SITE 1 AC2 22 LYS B 133 PHE B 137 LEU B 154 SER B 155 SITE 2 AC2 22 HIS B 164 LYS B 168 LEU B 171 LEU B 175 SITE 3 AC2 22 ASN B 321 THR B 322 GLY B 325 MET B 326 SITE 4 AC2 22 PRO B 387 GLN B 391 TRP B 455 ASN B 457 SITE 5 AC2 22 ASN B 468 LYS B 469 CYS B 471 ALA B 472 SITE 6 AC2 22 GLY B 473 PHE B 476 SITE 1 AC3 5 GLY A 366 LYS A 370 TYR B 151 SER B 306 SITE 2 AC3 5 GLU B 309 CRYST1 63.639 105.192 162.295 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015714 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006162 0.00000