HEADER HYDROLASE, APOPTOSIS 21-MAR-08 3CM5 TITLE CRYSTAL STRUCTURE OF CELL-DEATH RELATED NUCLEASE 4 (CRN-4) BOUND WITH TITLE 2 MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DEATH-RELATED NUCLEASE 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CRN-4; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 STRAIN: BRISTOL N2; SOURCE 5 GENE: CRN-4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-2 KEYWDS HYDROLASE, APOPTOSIS, APOPTOTIC NUCLEASE, 3'-5' EXONUCLEASE, DEDD KEYWDS 2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR Y.-Y.HSIAO,H.S.YUAN REVDAT 3 01-NOV-23 3CM5 1 REMARK SEQADV REVDAT 2 13-JAN-09 3CM5 1 JRNL REVDAT 1 30-DEC-08 3CM5 0 JRNL AUTH Y.-Y.HSIAO,A.NAKAGAWA,Z.SHI,S.MITANI,D.XUE,H.S.YUAN JRNL TITL CRYSTAL STRUCTURE OF CRN-4: IMPLICATIONS FOR DOMAIN FUNCTION JRNL TITL 2 IN APOPTOTIC DNA DEGRADATION JRNL REF MOL.CELL.BIOL. V. 29 448 2009 JRNL REFN ISSN 0270-7306 JRNL PMID 18981218 JRNL DOI 10.1128/MCB.01006-08 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 29078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92000 REMARK 3 B22 (A**2) : 2.16000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.423 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.523 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4902 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6642 ; 1.443 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.441 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;38.706 ;24.080 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;18.019 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.735 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3766 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2384 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3437 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.066 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3000 ; 0.972 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4776 ; 1.293 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2130 ; 1.794 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1866 ; 2.816 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3CG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% ISOPROPANAL, 0.1M HEPES PH 7.5, 10% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 62.56600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.71600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.56600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.71600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 PRO A -7 REMARK 465 GLY A -6 REMARK 465 ILE A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 THR A -1 REMARK 465 ARG A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 GLN A 4 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 PRO B -7 REMARK 465 GLY B -6 REMARK 465 ILE B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 THR B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TYR B 3 REMARK 465 GLN B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 103 123.24 -34.72 REMARK 500 SER A 112 -169.70 -169.29 REMARK 500 ASP A 150 -74.98 -54.14 REMARK 500 VAL A 220 93.12 -64.50 REMARK 500 TYR A 262 -63.67 -96.13 REMARK 500 ARG A 264 18.92 50.91 REMARK 500 GLU A 285 33.37 -82.84 REMARK 500 ALA B 22 -52.27 -28.56 REMARK 500 ASP B 44 58.34 37.55 REMARK 500 ASN B 53 85.10 -153.54 REMARK 500 ARG B 118 -70.84 -93.64 REMARK 500 ARG B 264 -0.68 71.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 300 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 GLU A 17 OE2 88.6 REMARK 620 3 ASP A 184 OD2 91.3 87.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 299 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 210 SG REMARK 620 2 CYS A 260 SG 108.2 REMARK 620 3 CYS A 263 SG 109.6 104.8 REMARK 620 4 CYS A 270 SG 113.0 113.5 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 300 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 15 OD2 REMARK 620 2 GLU B 17 OE2 90.2 REMARK 620 3 ASP B 184 OD2 92.0 92.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 299 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 210 SG REMARK 620 2 CYS B 260 SG 109.6 REMARK 620 3 CYS B 263 SG 111.9 101.9 REMARK 620 4 CYS B 270 SG 112.7 107.3 112.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CG7 RELATED DB: PDB REMARK 900 CELL-DEATH RELATED NUCLEASE 4 (CRN-4) REMARK 900 RELATED ID: 3CM6 RELATED DB: PDB REMARK 900 CELL-DEATH RELATED NUCLEASE 4 (CRN-4) BOUND WITH ER DBREF 3CM5 A 1 298 UNP Q10905 CRN4_CAEEL 1 298 DBREF 3CM5 B 1 298 UNP Q10905 CRN4_CAEEL 1 298 SEQADV 3CM5 GLY A -9 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 SER A -8 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 PRO A -7 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 GLY A -6 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 ILE A -5 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 PRO A -4 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 GLY A -3 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 SER A -2 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 THR A -1 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 ARG A 0 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 GLY B -9 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 SER B -8 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 PRO B -7 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 GLY B -6 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 ILE B -5 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 PRO B -4 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 GLY B -3 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 SER B -2 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 THR B -1 UNP Q10905 EXPRESSION TAG SEQADV 3CM5 ARG B 0 UNP Q10905 EXPRESSION TAG SEQRES 1 A 308 GLY SER PRO GLY ILE PRO GLY SER THR ARG MET ALA TYR SEQRES 2 A 308 GLN HIS CYS PRO PHE ASP THR LEU LEU ILE LEU ASP PHE SEQRES 3 A 308 GLU THR THR SER ASP ALA ALA ASN GLN ASP TYR PRO CYS SEQRES 4 A 308 GLU VAL ILE GLN PHE ALA ILE VAL ALA TYR ASP VAL PRO SEQRES 5 A 308 ASN ASP LYS ILE ARG GLU ASP ILE SER PHE ASN LYS TYR SEQRES 6 A 308 VAL LYS PRO VAL LEU ASN ARG THR LEU THR LYS ASN CYS SEQRES 7 A 308 VAL ASP PHE THR GLY ILE PRO GLN ARG SER ILE ASP THR SEQRES 8 A 308 ALA ASP THR PHE ASP VAL VAL TYR GLU GLN PHE GLN GLN SEQRES 9 A 308 TRP LEU ILE THR LEU GLY LEU GLU GLU GLY LYS PHE ALA SEQRES 10 A 308 PHE VAL CYS ASP SER ARG GLN ASP LEU TRP ARG ILE ALA SEQRES 11 A 308 GLN TYR GLN MET LYS LEU SER ASN ILE GLN MET PRO ALA SEQRES 12 A 308 PHE PHE ARG GLN TYR ILE ASN LEU TYR LYS ILE PHE THR SEQRES 13 A 308 ASN GLU MET ASP ARG MET GLY PRO LYS GLU LEU SER ALA SEQRES 14 A 308 THR THR ASN ILE GLY LYS MET ASN GLU TYR TYR ASP LEU SEQRES 15 A 308 PRO THR ILE GLY ARG ALA HIS ASP ALA MET ASP ASP CYS SEQRES 16 A 308 LEU ASN ILE ALA THR ILE LEU GLN ARG MET ILE ASN MET SEQRES 17 A 308 GLY ALA LYS VAL THR VAL ASN GLU LEU LEU THR CYS CYS SEQRES 18 A 308 ALA SER TRP ARG ARG GLN PRO LEU VAL TYR ASN LYS GLU SEQRES 19 A 308 TRP ARG SER SER PHE MET ASP ALA GLY LYS ILE PHE GLU SEQRES 20 A 308 ARG VAL LEU PRO LEU VAL VAL THR THR ILE ARG ALA GLY SEQRES 21 A 308 ASP PHE ARG LEU GLU MET TYR GLY VAL CYS ARG TYR CYS SEQRES 22 A 308 ARG LYS GLY MET ASP VAL CYS GLY THR SER HIS GLN GLN SEQRES 23 A 308 THR PRO HIS ASP LEU TYR LYS ASN GLU GLU ASP PRO ILE SEQRES 24 A 308 HIS PHE ALA LYS ILE ALA GLY TYR TYR SEQRES 1 B 308 GLY SER PRO GLY ILE PRO GLY SER THR ARG MET ALA TYR SEQRES 2 B 308 GLN HIS CYS PRO PHE ASP THR LEU LEU ILE LEU ASP PHE SEQRES 3 B 308 GLU THR THR SER ASP ALA ALA ASN GLN ASP TYR PRO CYS SEQRES 4 B 308 GLU VAL ILE GLN PHE ALA ILE VAL ALA TYR ASP VAL PRO SEQRES 5 B 308 ASN ASP LYS ILE ARG GLU ASP ILE SER PHE ASN LYS TYR SEQRES 6 B 308 VAL LYS PRO VAL LEU ASN ARG THR LEU THR LYS ASN CYS SEQRES 7 B 308 VAL ASP PHE THR GLY ILE PRO GLN ARG SER ILE ASP THR SEQRES 8 B 308 ALA ASP THR PHE ASP VAL VAL TYR GLU GLN PHE GLN GLN SEQRES 9 B 308 TRP LEU ILE THR LEU GLY LEU GLU GLU GLY LYS PHE ALA SEQRES 10 B 308 PHE VAL CYS ASP SER ARG GLN ASP LEU TRP ARG ILE ALA SEQRES 11 B 308 GLN TYR GLN MET LYS LEU SER ASN ILE GLN MET PRO ALA SEQRES 12 B 308 PHE PHE ARG GLN TYR ILE ASN LEU TYR LYS ILE PHE THR SEQRES 13 B 308 ASN GLU MET ASP ARG MET GLY PRO LYS GLU LEU SER ALA SEQRES 14 B 308 THR THR ASN ILE GLY LYS MET ASN GLU TYR TYR ASP LEU SEQRES 15 B 308 PRO THR ILE GLY ARG ALA HIS ASP ALA MET ASP ASP CYS SEQRES 16 B 308 LEU ASN ILE ALA THR ILE LEU GLN ARG MET ILE ASN MET SEQRES 17 B 308 GLY ALA LYS VAL THR VAL ASN GLU LEU LEU THR CYS CYS SEQRES 18 B 308 ALA SER TRP ARG ARG GLN PRO LEU VAL TYR ASN LYS GLU SEQRES 19 B 308 TRP ARG SER SER PHE MET ASP ALA GLY LYS ILE PHE GLU SEQRES 20 B 308 ARG VAL LEU PRO LEU VAL VAL THR THR ILE ARG ALA GLY SEQRES 21 B 308 ASP PHE ARG LEU GLU MET TYR GLY VAL CYS ARG TYR CYS SEQRES 22 B 308 ARG LYS GLY MET ASP VAL CYS GLY THR SER HIS GLN GLN SEQRES 23 B 308 THR PRO HIS ASP LEU TYR LYS ASN GLU GLU ASP PRO ILE SEQRES 24 B 308 HIS PHE ALA LYS ILE ALA GLY TYR TYR HET ZN A 299 1 HET MN A 300 1 HET ZN B 299 1 HET MN B 300 1 HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *81(H2 O) HELIX 1 1 THR A 65 GLY A 73 1 9 HELIX 2 2 PRO A 75 THR A 81 1 7 HELIX 3 3 PHE A 85 LEU A 99 1 15 HELIX 4 4 ARG A 113 ARG A 118 1 6 HELIX 5 5 ARG A 118 SER A 127 1 10 HELIX 6 6 PRO A 132 PHE A 135 5 4 HELIX 7 7 LEU A 141 GLY A 153 1 13 HELIX 8 8 THR A 161 TYR A 170 1 10 HELIX 9 9 ASP A 180 MET A 198 1 19 HELIX 10 10 ALA A 212 ARG A 216 5 5 HELIX 11 11 GLU A 224 SER A 227 5 4 HELIX 12 12 SER A 228 LEU A 240 1 13 HELIX 13 13 ARG A 248 PHE A 252 5 5 HELIX 14 14 ARG A 253 TYR A 257 5 5 HELIX 15 15 PRO A 278 TYR A 282 5 5 HELIX 16 16 ILE A 289 GLY A 296 1 8 HELIX 17 17 THR B 65 GLY B 73 1 9 HELIX 18 18 PRO B 75 THR B 81 1 7 HELIX 19 19 PHE B 85 GLY B 100 1 16 HELIX 20 20 ARG B 113 ARG B 118 1 6 HELIX 21 21 ARG B 118 SER B 127 1 10 HELIX 22 22 PRO B 132 PHE B 135 5 4 HELIX 23 23 LEU B 141 GLY B 153 1 13 HELIX 24 24 THR B 161 TYR B 170 1 10 HELIX 25 25 ASP B 180 MET B 198 1 19 HELIX 26 26 ALA B 212 GLN B 217 5 6 HELIX 27 27 GLU B 224 SER B 227 5 4 HELIX 28 28 SER B 228 LEU B 240 1 13 HELIX 29 29 ARG B 253 TYR B 257 5 5 HELIX 30 30 ILE B 289 GLY B 296 1 8 SHEET 1 A 8 ASP A 83 THR A 84 0 SHEET 2 A 8 LYS A 45 LYS A 57 1 N LYS A 57 O ASP A 83 SHEET 3 A 8 VAL A 31 ASP A 40 -1 N ASP A 40 O LYS A 45 SHEET 4 A 8 THR A 10 THR A 18 -1 N GLU A 17 O ILE A 32 SHEET 5 A 8 PHE A 106 CYS A 110 1 O ALA A 107 N LEU A 12 SHEET 6 A 8 GLN A 137 ASN A 140 1 O ILE A 139 N PHE A 108 SHEET 7 A 8 GLU A 206 THR A 209 -1 O GLU A 206 N TYR A 138 SHEET 8 A 8 VAL A 243 THR A 246 -1 O VAL A 243 N THR A 209 SHEET 1 B 8 ASP B 83 THR B 84 0 SHEET 2 B 8 LYS B 45 LYS B 57 1 N LYS B 57 O ASP B 83 SHEET 3 B 8 VAL B 31 ASP B 40 -1 N ASP B 40 O LYS B 45 SHEET 4 B 8 THR B 10 THR B 18 -1 N GLU B 17 O ILE B 32 SHEET 5 B 8 PHE B 106 CYS B 110 1 O ALA B 107 N LEU B 12 SHEET 6 B 8 GLN B 137 ASN B 140 1 O ILE B 139 N PHE B 108 SHEET 7 B 8 GLU B 206 THR B 209 -1 O GLU B 206 N TYR B 138 SHEET 8 B 8 VAL B 243 THR B 246 -1 O THR B 245 N LEU B 207 LINK OD2 ASP A 15 MN MN A 300 1555 1555 1.98 LINK OE2 GLU A 17 MN MN A 300 1555 1555 2.01 LINK OD2 ASP A 184 MN MN A 300 1555 1555 2.03 LINK SG CYS A 210 ZN ZN A 299 1555 1555 2.42 LINK SG CYS A 260 ZN ZN A 299 1555 1555 2.30 LINK SG CYS A 263 ZN ZN A 299 1555 1555 2.47 LINK SG CYS A 270 ZN ZN A 299 1555 1555 2.31 LINK OD2 ASP B 15 MN MN B 300 1555 1555 1.95 LINK OE2 GLU B 17 MN MN B 300 1555 1555 2.21 LINK OD2 ASP B 184 MN MN B 300 1555 1555 2.00 LINK SG CYS B 210 ZN ZN B 299 1555 1555 2.23 LINK SG CYS B 260 ZN ZN B 299 1555 1555 2.42 LINK SG CYS B 263 ZN ZN B 299 1555 1555 2.25 LINK SG CYS B 270 ZN ZN B 299 1555 1555 2.17 CISPEP 1 TYR A 257 GLY A 258 0 -18.33 SITE 1 AC1 4 CYS A 210 CYS A 260 CYS A 263 CYS A 270 SITE 1 AC2 5 ASP A 15 PHE A 16 GLU A 17 ASP A 184 SITE 2 AC2 5 HOH A 315 SITE 1 AC3 4 CYS B 210 CYS B 260 CYS B 263 CYS B 270 SITE 1 AC4 4 ASP B 15 GLU B 17 ASP B 184 HOH B 320 CRYST1 125.132 165.432 64.589 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015483 0.00000