HEADER HYDROLASE 21-MAR-08 3CMG TITLE CRYSTAL STRUCTURE OF PUTATIVE BETA-GALACTOSIDASE FROM BACTEROIDES TITLE 2 FRAGILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 38-693; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 ATCC: 25285; SOURCE 6 GENE: BF0328; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, PUTATIVE BETA-GALACTOSIDASE, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,M.RUTTER,R.TORO,S.HU,M.MALETIC,T.GHEYI,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 9 21-FEB-24 3CMG 1 REMARK REVDAT 8 03-FEB-21 3CMG 1 AUTHOR JRNL REMARK SEQADV REVDAT 7 14-NOV-18 3CMG 1 AUTHOR REVDAT 6 25-OCT-17 3CMG 1 REMARK REVDAT 5 13-JUL-11 3CMG 1 VERSN REVDAT 4 09-JUN-09 3CMG 1 REVDAT REVDAT 3 24-FEB-09 3CMG 1 VERSN REVDAT 2 23-DEC-08 3CMG 1 AUTHOR KEYWDS REVDAT 1 29-APR-08 3CMG 0 JRNL AUTH U.A.RAMAGOPAL,M.RUTTER,R.TORO,S.HU,M.MALETIC,T.GHEYI, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE BETA-GALACTOSIDASE FROM JRNL TITL 2 BACTEROIDES FRAGILIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 64465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 249 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.38000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : -2.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.614 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5599 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7611 ; 1.376 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 6.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;36.166 ;23.979 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 930 ;12.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;20.623 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 793 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4366 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2389 ; 0.198 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3762 ; 0.319 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 858 ; 0.172 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.172 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.207 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3413 ; 2.516 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5382 ; 3.418 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2518 ; 3.056 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2224 ; 4.367 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING REMARK 4 REMARK 4 3CMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-08; 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X6A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 0.979 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : 0.33700 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 50% MPD, 0.22M REMARK 280 AMMONIUM DIHYDROGEN PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.82550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.43900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.98350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.82550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.43900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.98350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.82550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.43900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.98350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.82550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.43900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.98350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 92360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 860 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 892 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 35 REMARK 465 GLU A 694 REMARK 465 GLY A 695 REMARK 465 HIS A 699 REMARK 465 HIS A 700 REMARK 465 HIS A 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 693 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 52.20 -104.52 REMARK 500 ASP A 273 84.03 -160.51 REMARK 500 GLN A 326 41.74 -92.90 REMARK 500 GLU A 330 -38.74 73.34 REMARK 500 PRO A 382 49.48 -84.97 REMARK 500 ASP A 391 -161.04 71.06 REMARK 500 SER A 485 -165.00 73.44 REMARK 500 TRP A 532 30.43 -95.87 REMARK 500 ARG A 577 149.41 -170.05 REMARK 500 ASP A 582 34.94 -97.84 REMARK 500 ASN A 605 72.36 -117.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11098L RELATED DB: TARGETDB DBREF 3CMG A 38 693 UNP Q5LIC7 Q5LIC7_BACFN 38 693 SEQADV 3CMG MET A 35 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG SER A 36 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG LEU A 37 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG GLU A 694 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG GLY A 695 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG HIS A 696 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG HIS A 697 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG HIS A 698 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG HIS A 699 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG HIS A 700 UNP Q5LIC7 EXPRESSION TAG SEQADV 3CMG HIS A 701 UNP Q5LIC7 EXPRESSION TAG SEQRES 1 A 667 MET SER LEU ARG GLN ASP ILE LEU LEU ASN ASN ASN TRP SEQRES 2 A 667 ASN PHE ARG PHE SER HIS GLN VAL GLN GLY ASP THR ARG SEQRES 3 A 667 ARG VAL ASP LEU PRO HIS THR TRP ASN ALA GLN ASP ALA SEQRES 4 A 667 LEU ALA GLY LYS ILE ASP TYR LYS ARG GLY ILE GLY ASN SEQRES 5 A 667 TYR GLU LYS ALA LEU TYR ILE ARG PRO GLU TRP LYS GLY SEQRES 6 A 667 LYS ARG LEU PHE LEU ARG PHE ASP GLY VAL ASN SER ILE SEQRES 7 A 667 ALA ASP VAL PHE ILE ASN ARG LYS HIS ILE GLY GLU HIS SEQRES 8 A 667 ARG GLY GLY TYR GLY ALA PHE ILE PHE GLU ILE THR ASP SEQRES 9 A 667 LEU VAL LYS TYR GLY GLU LYS ASN SER VAL LEU VAL ARG SEQRES 10 A 667 ALA ASN ASN GLY GLU GLN LEU ASP ILE MET PRO LEU VAL SEQRES 11 A 667 GLY ASP PHE ASN PHE TYR GLY GLY ILE TYR ARG ASP VAL SEQRES 12 A 667 HIS LEU LEU ILE THR ASP GLU THR CYS ILE SER PRO LEU SEQRES 13 A 667 ASP TYR ALA SER PRO GLY VAL TYR LEU VAL GLN GLU VAL SEQRES 14 A 667 VAL SER PRO GLN GLU ALA LYS VAL CYS ALA LYS VAL ASN SEQRES 15 A 667 LEU SER ASN ARG ALA ALA ASP GLY THR ALA GLU LEU GLN SEQRES 16 A 667 VAL LEU VAL THR ASP GLY THR LYS VAL ILE CYS LYS GLU SEQRES 17 A 667 SER ARG ASN VAL SER LEU LYS GLN GLY ALA ASP ILE LEU SEQRES 18 A 667 GLU GLN LEU PRO LEU LEU ILE GLN LYS PRO ARG LEU TRP SEQRES 19 A 667 ASN GLY CYS GLU ASP PRO PHE MET TYR GLN VAL SER ILE SEQRES 20 A 667 SER LEU HIS LYS ASP GLY LYS GLN ILE ASP SER VAL THR SEQRES 21 A 667 GLN PRO LEU GLY LEU ARG TYR TYR HIS THR ASP PRO ASP SEQRES 22 A 667 LYS GLY PHE PHE LEU ASN GLY LYS HIS LEU PRO LEU HIS SEQRES 23 A 667 GLY VAL CYS ARG HIS GLN ASP ARG ALA GLU VAL GLY ASN SEQRES 24 A 667 ALA LEU ARG PRO GLN HIS HIS GLU GLU ASP VAL ALA LEU SEQRES 25 A 667 MET ARG GLU MET GLY VAL ASN ALA ILE ARG LEU ALA HIS SEQRES 26 A 667 TYR PRO GLN ALA THR TYR MET TYR ASP LEU MET ASP LYS SEQRES 27 A 667 HIS GLY ILE VAL THR TRP ALA GLU ILE PRO PHE VAL GLY SEQRES 28 A 667 PRO GLY GLY TYR ALA ASP LYS GLY PHE VAL ASP GLN ALA SEQRES 29 A 667 SER PHE ARG GLU ASN GLY LYS GLN GLN LEU ILE GLU LEU SEQRES 30 A 667 ILE ARG GLN HIS TYR ASN HIS PRO SER ILE CYS PHE TRP SEQRES 31 A 667 GLY LEU PHE ASN GLU LEU LYS GLU VAL GLY ASP ASN PRO SEQRES 32 A 667 VAL GLU TYR VAL LYS GLU LEU ASN ALA LEU ALA LYS GLN SEQRES 33 A 667 GLU ASP PRO THR ARG PRO THR THR SER ALA SER ASN GLN SEQRES 34 A 667 ASP GLY ASN LEU ASN PHE ILE THR GLU ASN ILE ALA TRP SEQRES 35 A 667 ASN ARG TYR ASP GLY TRP TYR GLY SER THR PRO LYS THR SEQRES 36 A 667 LEU ALA THR PHE LEU ASP ARG THR HIS LYS LYS HIS PRO SEQRES 37 A 667 GLU LEU ARG ILE GLY ILE SER GLU TYR GLY ALA GLY ALA SEQRES 38 A 667 SER ILE TYR HIS GLN GLN ASP SER LEU LYS GLN PRO SER SEQRES 39 A 667 ALA SER GLY TRP TRP HIS PRO GLU ASN TRP GLN THR TYR SEQRES 40 A 667 TYR HIS MET GLU ASN TRP LYS ILE ILE ALA GLU ARG PRO SEQRES 41 A 667 PHE VAL TRP GLY THR PHE VAL TRP ASN MET PHE ASP PHE SEQRES 42 A 667 GLY ALA ALA HIS ARG THR GLU GLY ASP ARG PRO GLY ILE SEQRES 43 A 667 ASN ASP LYS GLY LEU VAL THR PHE ASP ARG LYS VAL ARG SEQRES 44 A 667 LYS ASP ALA PHE TYR PHE TYR LYS ALA ASN TRP ASN LYS SEQRES 45 A 667 GLN GLU PRO MET ILE TYR LEU ALA GLU LYS ARG CYS ARG SEQRES 46 A 667 LEU ARG TYR GLN PRO GLU GLN THR PHE MET ALA PHE THR SEQRES 47 A 667 THR ALA PRO GLU ALA GLU LEU PHE VAL ASN GLY VAL SER SEQRES 48 A 667 CYS GLY LYS GLN LYS ALA ASP THR TYR SER THR VAL VAL SEQRES 49 A 667 TRP LYS ASN VAL LYS LEU THR SER GLY GLU ASN ILE ILE SEQRES 50 A 667 ARG VAL THR THR PRO GLY LYS LYS PRO LEU THR ASP GLU SEQRES 51 A 667 VAL THR VAL GLU TYR LYS GLU ASP ARG GLU GLY HIS HIS SEQRES 52 A 667 HIS HIS HIS HIS HET PO4 A 810 5 HET CL A 820 1 HET MPD A 800 8 HET MPD A 801 8 HET MPD A 802 8 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 CL CL 1- FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 HOH *528(H2 O) HELIX 1 1 ASP A 72 GLY A 76 5 5 HELIX 2 2 ARG A 94 LYS A 98 5 5 HELIX 3 3 ASN A 269 ASP A 273 5 5 HELIX 4 4 ARG A 336 MET A 350 1 15 HELIX 5 5 ALA A 363 GLY A 374 1 12 HELIX 6 6 GLN A 397 TYR A 416 1 20 HELIX 7 7 PRO A 437 ASP A 452 1 16 HELIX 8 8 GLY A 465 ILE A 470 5 6 HELIX 9 9 PRO A 487 HIS A 501 1 15 HELIX 10 10 PRO A 535 GLU A 552 1 18 HELIX 11 11 LYS A 594 ASN A 605 1 12 SHEET 1 A 4 GLN A 39 LEU A 42 0 SHEET 2 A 4 VAL A 177 THR A 182 -1 O LEU A 179 N ILE A 41 SHEET 3 A 4 ARG A 101 PHE A 106 -1 N ARG A 101 O THR A 182 SHEET 4 A 4 PHE A 132 GLU A 135 -1 O PHE A 132 N PHE A 106 SHEET 1 B 6 ARG A 60 VAL A 62 0 SHEET 2 B 6 TRP A 47 PHE A 51 -1 N PHE A 49 O ARG A 60 SHEET 3 B 6 ILE A 84 TYR A 92 -1 O ASN A 86 N ARG A 50 SHEET 4 B 6 LYS A 145 ASN A 153 -1 O ASN A 146 N LEU A 91 SHEET 5 B 6 ILE A 112 ILE A 117 -1 N ASP A 114 O ARG A 151 SHEET 6 B 6 LYS A 120 ARG A 126 -1 O ILE A 122 N VAL A 115 SHEET 1 C 3 THR A 185 ILE A 187 0 SHEET 2 C 3 GLU A 208 ASN A 219 -1 O SER A 218 N CYS A 186 SHEET 3 C 3 VAL A 197 VAL A 204 -1 N TYR A 198 O LYS A 214 SHEET 1 D 3 THR A 185 ILE A 187 0 SHEET 2 D 3 GLU A 208 ASN A 219 -1 O SER A 218 N CYS A 186 SHEET 3 D 3 ASP A 253 GLN A 263 -1 O GLU A 256 N VAL A 215 SHEET 1 E 4 LYS A 237 LEU A 248 0 SHEET 2 E 4 GLY A 224 ASP A 234 -1 N GLY A 224 O LEU A 248 SHEET 3 E 4 TYR A 277 LYS A 285 -1 O SER A 280 N LEU A 231 SHEET 4 E 4 LYS A 288 LEU A 297 -1 O ILE A 290 N LEU A 283 SHEET 1 F 3 TYR A 302 ASP A 305 0 SHEET 2 F 3 GLY A 309 LEU A 312 -1 O GLY A 309 N ASP A 305 SHEET 3 F 3 LYS A 315 HIS A 316 -1 O LYS A 315 N LEU A 312 SHEET 1 G 9 HIS A 320 CYS A 323 0 SHEET 2 G 9 ALA A 354 LEU A 357 1 O ARG A 356 N VAL A 322 SHEET 3 G 9 VAL A 376 GLU A 380 1 O VAL A 376 N ILE A 355 SHEET 4 G 9 ILE A 421 ASN A 428 1 O GLY A 425 N ALA A 379 SHEET 5 G 9 THR A 457 SER A 461 1 O ALA A 460 N PHE A 427 SHEET 6 G 9 ILE A 474 ASN A 477 1 O ALA A 475 N SER A 461 SHEET 7 G 9 ILE A 506 TYR A 511 1 O GLY A 507 N TRP A 476 SHEET 8 G 9 THR A 559 VAL A 561 1 O PHE A 560 N ILE A 508 SHEET 9 G 9 HIS A 320 CYS A 323 1 N CYS A 323 O VAL A 561 SHEET 1 H 2 PHE A 567 GLY A 568 0 SHEET 2 H 2 ILE A 580 ASN A 581 -1 O ASN A 581 N PHE A 567 SHEET 1 I 3 ILE A 611 LEU A 613 0 SHEET 2 I 3 GLN A 626 THR A 632 -1 O PHE A 631 N TYR A 612 SHEET 3 I 3 THR A 656 VAL A 662 -1 O VAL A 657 N ALA A 630 SHEET 1 J 5 LEU A 620 ARG A 621 0 SHEET 2 J 5 THR A 682 TYR A 689 1 O GLU A 688 N ARG A 621 SHEET 3 J 5 GLY A 667 THR A 674 -1 N GLY A 667 O TYR A 689 SHEET 4 J 5 GLU A 636 VAL A 641 -1 N PHE A 640 O ARG A 672 SHEET 5 J 5 VAL A 644 LYS A 650 -1 O CYS A 646 N LEU A 639 CISPEP 1 LEU A 64 PRO A 65 0 -3.25 CISPEP 2 ASN A 110 SER A 111 0 -3.20 CISPEP 3 MET A 161 PRO A 162 0 0.28 CISPEP 4 ALA A 358 HIS A 359 0 -6.64 CISPEP 5 TRP A 562 ASN A 563 0 5.68 SITE 1 AC1 9 HIS A 359 ASN A 428 GLU A 429 ASN A 477 SITE 2 AC1 9 GLU A 510 TRP A 562 HOH A 937 HOH A1007 SITE 3 AC1 9 HOH A1010 SITE 1 AC2 4 LYS A 392 GLY A 393 PHE A 394 LYS A 431 SITE 1 AC3 4 ALA A 222 GLY A 224 THR A 225 LYS A 285 SITE 1 AC4 6 PHE A 49 ARG A 60 HIS A 66 HOH A 994 SITE 2 AC4 6 HOH A1196 HOH A1306 CRYST1 79.651 102.878 199.967 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012555 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005001 0.00000