HEADER OXIDOREDUCTASE 21-MAR-08 3CMI TITLE CRYSTAL STRUCTURE OF GLUTATHIONE-DEPENDENT PHOSPHOLIPID PEROXIDASE TITLE 2 HYR1 FROM THE YEAST SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN HYR1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYDROGEN PEROXIDE RESISTANCE PROTEIN 1, OXIDANT RECEPTOR COMPND 5 PEROXIDASE 1, GLUTATHIONE PEROXIDASE 3, PHOSPHOLIPID HYDROPEROXIDE COMPND 6 GLUTATHIONE PEROXIDASE 3, PHGPX3; COMPND 7 EC: 1.11.1.15; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S228C; SOURCE 6 GENE: HYR1, GPX3, ORP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS THIOREDOXIN-LIKE FOLD, OXIDOREDUCTASE, PEROXIDASE, REDOX-ACTIVE KEYWDS 2 CENTER EXPDTA X-RAY DIFFRACTION AUTHOR W.J.Z.ZHANG,Y.X.HE,J.YU,C.Z.ZHOU REVDAT 5 01-NOV-23 3CMI 1 SEQADV REVDAT 4 13-JUL-11 3CMI 1 VERSN REVDAT 3 24-FEB-09 3CMI 1 VERSN REVDAT 2 11-NOV-08 3CMI 1 JRNL REVDAT 1 16-SEP-08 3CMI 0 JRNL AUTH W.J.ZHANG,Y.X.HE,Z.YANG,J.YU,Y.CHEN,C.Z.ZHOU JRNL TITL CRYSTAL STRUCTURE OF GLUTATHIONE-DEPENDENT PHOSPHOLIPID JRNL TITL 2 PEROXIDASE HYR1 FROM THE YEAST SACCHAROMYCES CEREVISIAE JRNL REF PROTEINS V. 73 1058 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18767166 JRNL DOI 10.1002/PROT.22220 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.6 REMARK 3 NUMBER OF REFLECTIONS : 8294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 418 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 17.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.1700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : 1.46000 REMARK 3 B33 (A**2) : -3.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1177 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1577 ; 1.168 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 5.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;41.632 ;24.898 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;16.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;18.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 166 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 866 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 510 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 788 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 50 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 733 ; 0.294 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 0.470 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 509 ; 0.836 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 432 ; 1.234 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7280 18.0140 13.8780 REMARK 3 T TENSOR REMARK 3 T11: -0.1415 T22: -0.1026 REMARK 3 T33: 0.2520 T12: -0.0309 REMARK 3 T13: 0.1049 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.5809 L22: 7.4025 REMARK 3 L33: 2.0580 L12: -0.1076 REMARK 3 L13: -0.1237 L23: 0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.1428 S12: 0.2841 S13: -0.1051 REMARK 3 S21: -0.5701 S22: 0.0269 S23: -1.0232 REMARK 3 S31: -0.1477 S32: 0.1057 S33: 0.1159 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9530 12.0970 32.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.4751 T22: 0.3393 REMARK 3 T33: 0.2640 T12: 0.1277 REMARK 3 T13: -0.1490 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 5.4190 L22: 21.0369 REMARK 3 L33: 10.1074 L12: -0.2129 REMARK 3 L13: 0.4902 L23: 5.9723 REMARK 3 S TENSOR REMARK 3 S11: -0.4220 S12: -1.9973 S13: -0.3772 REMARK 3 S21: 3.0901 S22: -0.0472 S23: -0.3901 REMARK 3 S31: -0.1765 S32: -0.5273 S33: 0.4692 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2920 17.0450 20.5240 REMARK 3 T TENSOR REMARK 3 T11: -0.1695 T22: -0.0655 REMARK 3 T33: 0.1673 T12: 0.0005 REMARK 3 T13: 0.0148 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.3580 L22: 8.4612 REMARK 3 L33: 1.7252 L12: 0.2123 REMARK 3 L13: 0.4058 L23: 0.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.1682 S13: -0.0256 REMARK 3 S21: 0.2891 S22: 0.0287 S23: -0.8715 REMARK 3 S31: -0.1475 S32: 0.0044 S33: -0.0712 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4610 13.2510 16.7450 REMARK 3 T TENSOR REMARK 3 T11: -0.1000 T22: -0.0352 REMARK 3 T33: 0.1920 T12: -0.0160 REMARK 3 T13: -0.0184 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.5998 L22: 9.1400 REMARK 3 L33: 0.1737 L12: -0.7243 REMARK 3 L13: -0.7833 L23: -0.0134 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.1038 S13: -0.2059 REMARK 3 S21: -0.2281 S22: -0.0104 S23: 0.4402 REMARK 3 S31: 0.0422 S32: -0.1773 S33: 0.0806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : 0.37600 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2P5Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE, PH4.6, 30% POLYETHYLENE GLYCOL 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 69 REMARK 465 GLN A 70 REMARK 465 GLU A 71 REMARK 465 PRO A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ASP A 75 REMARK 465 GLU A 76 REMARK 465 GLU A 77 REMARK 465 ILE A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 PHE A 81 REMARK 465 CYS A 82 REMARK 465 GLN A 83 REMARK 465 LEU A 84 REMARK 465 ASN A 85 REMARK 465 TYR A 86 REMARK 465 GLU A 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 15 CD GLN A 15 NE2 0.166 REMARK 500 REMARK 500 REMARK: NULL DBREF 3CMI A 1 163 UNP P40581 GPX3_YEAST 1 163 SEQADV 3CMI MET A -7 UNP P40581 EXPRESSION TAG SEQADV 3CMI GLY A -6 UNP P40581 EXPRESSION TAG SEQADV 3CMI HIS A -5 UNP P40581 EXPRESSION TAG SEQADV 3CMI HIS A -4 UNP P40581 EXPRESSION TAG SEQADV 3CMI HIS A -3 UNP P40581 EXPRESSION TAG SEQADV 3CMI HIS A -2 UNP P40581 EXPRESSION TAG SEQADV 3CMI HIS A -1 UNP P40581 EXPRESSION TAG SEQADV 3CMI HIS A 0 UNP P40581 EXPRESSION TAG SEQRES 1 A 171 MET GLY HIS HIS HIS HIS HIS HIS MET SER GLU PHE TYR SEQRES 2 A 171 LYS LEU ALA PRO VAL ASP LYS LYS GLY GLN PRO PHE PRO SEQRES 3 A 171 PHE ASP GLN LEU LYS GLY LYS VAL VAL LEU ILE VAL ASN SEQRES 4 A 171 VAL ALA SER LYS CYS GLY PHE THR PRO GLN TYR LYS GLU SEQRES 5 A 171 LEU GLU ALA LEU TYR LYS ARG TYR LYS ASP GLU GLY PHE SEQRES 6 A 171 THR ILE ILE GLY PHE PRO CYS ASN GLN PHE GLY HIS GLN SEQRES 7 A 171 GLU PRO GLY SER ASP GLU GLU ILE ALA GLN PHE CYS GLN SEQRES 8 A 171 LEU ASN TYR GLY VAL THR PHE PRO ILE MET LYS LYS ILE SEQRES 9 A 171 ASP VAL ASN GLY GLY ASN GLU ASP PRO VAL TYR LYS PHE SEQRES 10 A 171 LEU LYS SER GLN LYS SER GLY MET LEU GLY LEU ARG GLY SEQRES 11 A 171 ILE LYS TRP ASN PHE GLU LYS PHE LEU VAL ASP LYS LYS SEQRES 12 A 171 GLY LYS VAL TYR GLU ARG TYR SER SER LEU THR LYS PRO SEQRES 13 A 171 SER SER LEU SER GLU THR ILE GLU GLU LEU LEU LYS GLU SEQRES 14 A 171 VAL GLU FORMUL 2 HOH *39(H2 O) HELIX 1 1 SER A 2 LEU A 7 5 6 HELIX 2 2 PRO A 18 LYS A 23 5 6 HELIX 3 3 PHE A 38 LYS A 53 1 16 HELIX 4 4 ASP A 104 LYS A 114 1 11 HELIX 5 5 LYS A 147 SER A 150 5 4 HELIX 6 6 LEU A 151 LYS A 160 1 10 SHEET 1 A 4 PHE A 57 CYS A 64 0 SHEET 2 A 4 VAL A 26 ALA A 33 1 N VAL A 32 O PHE A 62 SHEET 3 A 4 LYS A 129 VAL A 132 -1 O PHE A 130 N ILE A 29 SHEET 4 A 4 VAL A 138 TYR A 142 -1 O TYR A 142 N LYS A 129 CRYST1 39.570 64.880 72.020 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013885 0.00000