HEADER HYDROLASE 22-MAR-08 3CMJ TITLE CRYSTAL STRUCTURE OF ENGINEERED BETA-GLUCOSIDASE FROM SOIL METAGENOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS BGL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HWANG,K.H.NAM REVDAT 4 01-NOV-23 3CMJ 1 REMARK REVDAT 3 10-NOV-21 3CMJ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 3CMJ 1 VERSN REVDAT 1 07-OCT-08 3CMJ 0 JRNL AUTH K.H.NAM,S.J.KIM,M.Y.KIM,J.H.KIM,Y.S.YEO,C.M.LEE,H.K.JUN, JRNL AUTH 2 K.Y.HWANG JRNL TITL CRYSTAL STRUCTURE OF ENGINEERED BETA-GLUCOSIDASE FROM A SOIL JRNL TITL 2 METAGENOME. JRNL REF PROTEINS V. 73 788 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18712828 JRNL DOI 10.1002/PROT.22199 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 54699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3643 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4955 ; 1.341 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ;12.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;33.097 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;12.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.971 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2891 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1869 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2501 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 326 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.091 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.095 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.074 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2191 ; 0.580 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3510 ; 1.118 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1539 ; 1.895 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1445 ; 3.108 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23986 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54735 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB CODE 1OIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA/K TARTRATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.16550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.48900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.50100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.48900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.16550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.50100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 VAL A 32 REMARK 465 PRO A 33 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 HIS A 37 REMARK 465 MET A 38 REMARK 465 ASN A 39 REMARK 465 VAL A 40 REMARK 465 ASP A 482 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 316 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 -127.77 51.73 REMARK 500 TRP A 159 -6.04 87.36 REMARK 500 ASP A 160 60.00 -97.27 REMARK 500 THR A 200 -71.75 -72.59 REMARK 500 TRP A 442 -128.22 51.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 305 PRO A 306 -130.10 REMARK 500 GLU A 315 ASP A 316 -119.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 60 O REMARK 620 2 HOH A 489 O 99.3 REMARK 620 3 HOH A 570 O 120.7 116.3 REMARK 620 4 HOH A 579 O 108.5 121.2 92.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 2 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 561 O REMARK 620 2 HOH A 803 O 117.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 5 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 87 OG REMARK 620 2 HOH A 512 O 95.3 REMARK 620 3 HOH A 734 O 90.8 137.8 REMARK 620 4 HOH A 792 O 90.7 117.8 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 6 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 106 O REMARK 620 2 HOH A 674 O 104.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 7 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 507 O REMARK 620 2 HOH A 559 O 117.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 8 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 123 NE2 REMARK 620 2 GLU A 182 OE2 164.2 REMARK 620 3 HOH A 491 O 76.9 89.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 9 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 587 O REMARK 620 2 HOH A 808 O 116.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 10 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 O REMARK 620 2 HOH A 809 O 110.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 13 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 O REMARK 620 2 SER A 176 OG 105.9 REMARK 620 3 HOH A 497 O 110.8 137.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 14 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 243 O REMARK 620 2 HOH A 704 O 127.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 486 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 389 O REMARK 620 2 HOH A 502 O 130.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 483 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 839 O REMARK 620 2 HOH A 848 O 153.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT A 488 DBREF 3CMJ A 39 482 UNP Q0GMU3 Q0GMU3_9BACT 39 482 SEQADV 3CMJ MET A 18 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ GLY A 19 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ SER A 20 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ SER A 21 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 22 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 23 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 24 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 25 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 26 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 27 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ SER A 28 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ SER A 29 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ GLY A 30 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ VAL A 32 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ ARG A 34 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ GLY A 35 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ SER A 36 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ HIS A 37 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ MET A 38 UNP Q0GMU3 EXPRESSION TAG SEQADV 3CMJ ASN A 39 UNP Q0GMU3 GLU 39 ENGINEERED MUTATION SEQADV 3CMJ VAL A 40 UNP Q0GMU3 LEU 40 ENGINEERED MUTATION SEQADV 3CMJ LYS A 41 UNP Q0GMU3 GLN 41 ENGINEERED MUTATION SEQADV 3CMJ LYS A 42 UNP Q0GMU3 PRO 42 ENGINEERED MUTATION SEQADV 3CMJ GLU A 45 UNP Q0GMU3 LYS 45 ENGINEERED MUTATION SEQADV 3CMJ ASN A 477 UNP Q0GMU3 ARG 477 ENGINEERED MUTATION SEQADV 3CMJ GLU A 481 UNP Q0GMU3 ALA 481 ENGINEERED MUTATION SEQADV 3CMJ ASP A 482 UNP Q0GMU3 ALA 482 ENGINEERED MUTATION SEQRES 1 A 465 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 465 LEU VAL PRO ARG GLY SER HIS MET ASN VAL LYS LYS PHE SEQRES 3 A 465 PRO GLU GLY PHE LEU TRP GLY ALA ALA THR SER SER TYR SEQRES 4 A 465 GLN ILE GLU GLY ALA TRP ASN GLU ASP GLY LYS GLY GLU SEQRES 5 A 465 SER ILE TRP ASP ARG PHE THR ARG ILE PRO GLY LYS ILE SEQRES 6 A 465 LYS ASN GLY ASP SER GLY ASP VAL ALA CYS ASP HIS TYR SEQRES 7 A 465 HIS ARG TYR GLU GLN ASP LEU ASP LEU MET ARG GLN LEU SEQRES 8 A 465 GLY LEU LYS THR TYR ARG PHE SER ILE ALA TRP ALA ARG SEQRES 9 A 465 ILE GLN PRO ASP SER SER ARG GLN ILE ASN GLN ARG GLY SEQRES 10 A 465 LEU ASP PHE TYR ARG ARG LEU VAL GLU GLY LEU HIS LYS SEQRES 11 A 465 ARG ASP ILE LEU PRO MET ALA THR LEU TYR HIS TRP ASP SEQRES 12 A 465 LEU PRO GLN TRP VAL GLU ASP GLU GLY GLY TRP LEU SER SEQRES 13 A 465 ARG GLU SER ALA SER ARG PHE ALA GLU TYR THR HIS ALA SEQRES 14 A 465 LEU VAL ALA ALA LEU GLY ASP GLN ILE PRO LEU TRP VAL SEQRES 15 A 465 THR HIS ASN GLU PRO MET VAL THR VAL TRP ALA GLY TYR SEQRES 16 A 465 HIS MET GLY LEU PHE ALA PRO GLY LEU LYS ASP PRO THR SEQRES 17 A 465 LEU GLY GLY ARG VAL ALA HIS HIS LEU LEU LEU SER HIS SEQRES 18 A 465 GLY GLN ALA LEU GLN ALA PHE ARG ALA LEU SER PRO ALA SEQRES 19 A 465 GLY SER GLN MET GLY ILE THR LEU ASN PHE ASN THR ILE SEQRES 20 A 465 TYR PRO VAL SER ALA GLU PRO ALA ASP VAL GLU ALA ALA SEQRES 21 A 465 ARG ARG MET HIS SER PHE GLN ASN GLU LEU PHE LEU GLU SEQRES 22 A 465 PRO LEU ILE ARG GLY GLN TYR ASN GLN ALA THR LEU MET SEQRES 23 A 465 ALA TYR PRO ASN LEU PRO GLU PHE ILE ALA PRO GLU ASP SEQRES 24 A 465 MET GLN THR ILE SER ALA PRO ILE ASP PHE LEU GLY VAL SEQRES 25 A 465 ASN TYR TYR ASN PRO MET ARG VAL LYS SER SER PRO GLN SEQRES 26 A 465 PRO PRO GLY ILE GLU VAL VAL GLN VAL GLU SER PRO VAL SEQRES 27 A 465 THR ALA MET GLY TRP GLU ILE ALA PRO GLU GLY LEU TYR SEQRES 28 A 465 ASP LEU LEU MET GLY ILE THR ARG THR TYR GLY LYS LEU SEQRES 29 A 465 PRO ILE TYR ILE THR GLU ASN GLY ALA ALA PHE ASP ASP SEQRES 30 A 465 GLN PRO ASP GLN SER GLY GLN VAL ASN ASP PRO GLN ARG SEQRES 31 A 465 VAL GLY TYR PHE GLN GLY HIS ILE GLY ALA ALA ARG ARG SEQRES 32 A 465 ALA LEU ALA ASP GLY VAL ASP LEU ARG GLY TYR TYR ALA SEQRES 33 A 465 TRP SER LEU LEU ASP ASN PHE GLU TRP ALA GLU GLY TYR SEQRES 34 A 465 SER LYS ARG PHE GLY ILE ILE TYR VAL ASP PHE GLU THR SEQRES 35 A 465 GLN GLN ARG THR LEU LYS GLN SER ALA GLN TRP TYR ARG SEQRES 36 A 465 ASP VAL ILE ALA ASN ASN GLY LEU GLU ASP HET NA A 1 1 HET NA A 2 1 HET NA A 3 1 HET NA A 4 1 HET NA A 5 1 HET NA A 6 1 HET NA A 7 1 HET NA A 8 1 HET NA A 9 1 HET NA A 10 1 HET NA A 11 1 HET NA A 12 1 HET NA A 13 1 HET NA A 14 1 HET NA A 15 1 HET NA A 16 1 HET NA A 17 1 HET NA A 483 1 HET NA A 484 1 HET NA A 485 1 HET NA A 486 1 HET NA A 487 1 HET SRT A 488 10 HETNAM NA SODIUM ION HETNAM SRT S,R MESO-TARTARIC ACID FORMUL 2 NA 22(NA 1+) FORMUL 24 SRT C4 H6 O6 FORMUL 25 HOH *367(H2 O) HELIX 1 1 SER A 54 GLU A 59 1 6 HELIX 2 2 SER A 70 THR A 76 1 7 HELIX 3 3 ILE A 82 ASP A 86 5 5 HELIX 4 4 ASP A 93 GLY A 109 1 17 HELIX 5 5 ALA A 118 GLN A 123 1 6 HELIX 6 6 ASN A 131 ARG A 148 1 18 HELIX 7 7 PRO A 162 GLU A 168 1 7 HELIX 8 8 GLY A 169 SER A 173 5 5 HELIX 9 9 ARG A 174 GLY A 192 1 19 HELIX 10 10 ASP A 193 ILE A 195 5 3 HELIX 11 11 GLU A 203 HIS A 213 1 11 HELIX 12 12 ASP A 223 THR A 225 5 3 HELIX 13 13 LEU A 226 SER A 249 1 24 HELIX 14 14 GLU A 270 LEU A 287 1 18 HELIX 15 15 PHE A 288 GLY A 295 1 8 HELIX 16 16 ASN A 298 TYR A 305 1 8 HELIX 17 17 ASN A 307 ILE A 312 5 6 HELIX 18 18 GLU A 315 SER A 321 1 7 HELIX 19 19 ALA A 363 GLY A 379 1 17 HELIX 20 20 ASP A 404 ASP A 424 1 21 HELIX 21 21 GLU A 441 LYS A 448 5 8 HELIX 22 22 LYS A 465 ASN A 478 1 14 SHEET 1 A 9 LEU A 48 ALA A 52 0 SHEET 2 A 9 THR A 112 SER A 116 1 O ARG A 114 N ALA A 51 SHEET 3 A 9 LEU A 151 TYR A 157 1 O THR A 155 N PHE A 115 SHEET 4 A 9 LEU A 197 ASN A 202 1 O VAL A 199 N LEU A 156 SHEET 5 A 9 GLN A 254 ASN A 260 1 O GLY A 256 N TRP A 198 SHEET 6 A 9 PHE A 326 ASN A 330 1 O GLY A 328 N ILE A 257 SHEET 7 A 9 ILE A 383 ASN A 388 1 O TYR A 384 N VAL A 329 SHEET 8 A 9 LEU A 428 TRP A 434 1 O ARG A 429 N ILE A 383 SHEET 9 A 9 LEU A 48 ALA A 52 1 N GLY A 50 O TYR A 431 SHEET 1 B 3 ILE A 264 PRO A 266 0 SHEET 2 B 3 MET A 335 SER A 339 1 O MET A 335 N TYR A 265 SHEET 3 B 3 ILE A 346 VAL A 349 -1 O VAL A 349 N ARG A 336 SHEET 1 C 2 ILE A 453 VAL A 455 0 SHEET 2 C 2 ARG A 462 LEU A 464 -1 O THR A 463 N TYR A 454 LINK NA NA A 1 O GLY A 60 1555 1555 2.79 LINK NA NA A 1 O HOH A 489 1555 1555 2.79 LINK NA NA A 1 O HOH A 570 1555 1555 2.77 LINK NA NA A 1 O HOH A 579 1555 1555 2.72 LINK NA NA A 2 O HOH A 561 1555 1555 2.42 LINK NA NA A 2 O HOH A 803 1555 1555 2.79 LINK NA NA A 3 O HOH A 819 1555 1555 2.95 LINK NA NA A 4 OD2 ASP A 86 1555 1555 2.68 LINK NA NA A 5 OG SER A 87 1555 1555 2.83 LINK NA NA A 5 O HOH A 512 1555 1555 2.57 LINK NA NA A 5 O HOH A 734 1555 1555 2.86 LINK NA NA A 5 O HOH A 792 1555 1555 2.86 LINK NA NA A 6 O ARG A 106 1555 1555 2.95 LINK NA NA A 6 O HOH A 674 1555 1555 2.70 LINK NA NA A 7 O HOH A 507 1555 1555 2.61 LINK NA NA A 7 O HOH A 559 1555 1555 2.92 LINK NA NA A 8 NE2 GLN A 123 1555 1555 2.95 LINK NA NA A 8 OE2 GLU A 182 1555 1555 2.70 LINK NA NA A 8 O HOH A 491 1555 1555 2.64 LINK NA NA A 9 O HOH A 587 1555 1555 2.39 LINK NA NA A 9 O HOH A 808 1555 1555 2.28 LINK NA NA A 10 O GLU A 143 1555 1555 2.78 LINK NA NA A 10 O HOH A 809 1555 1555 2.75 LINK NA NA A 13 O GLU A 168 1555 1555 2.90 LINK NA NA A 13 OG SER A 176 1555 1555 2.85 LINK NA NA A 13 O HOH A 497 1555 1555 2.64 LINK NA NA A 14 O GLN A 243 1555 1555 2.86 LINK NA NA A 14 O HOH A 704 1555 1555 2.71 LINK NA NA A 16 O HOH A 640 1555 1555 2.72 LINK OE1 GLN A 284 NA NA A 484 1555 1555 2.84 LINK OG1 THR A 356 NA NA A 487 1555 1555 2.72 LINK O GLY A 389 NA NA A 486 1555 1555 2.83 LINK NA NA A 483 O HOH A 839 1555 1555 2.57 LINK NA NA A 483 O HOH A 848 1555 1555 2.44 LINK NA NA A 485 O HOH A 548 1555 1555 2.51 LINK NA NA A 486 O HOH A 502 1555 1555 2.83 CISPEP 1 ALA A 218 PRO A 219 0 3.58 CISPEP 2 PRO A 343 PRO A 344 0 -1.45 CISPEP 3 SER A 353 PRO A 354 0 -4.49 CISPEP 4 TRP A 434 SER A 435 0 2.25 SITE 1 AC1 4 GLY A 60 HOH A 489 HOH A 570 HOH A 579 SITE 1 AC2 4 PRO A 79 HOH A 558 HOH A 561 HOH A 803 SITE 1 AC3 1 HOH A 819 SITE 1 AC4 6 LYS A 83 ASN A 84 ASP A 86 GLU A 444 SITE 2 AC4 6 TYR A 446 SER A 447 SITE 1 AC5 4 SER A 87 HOH A 512 HOH A 734 HOH A 792 SITE 1 AC6 4 ARG A 106 GLY A 109 HOH A 674 HOH A 726 SITE 1 AC7 3 ASP A 167 HOH A 507 HOH A 559 SITE 1 AC8 4 GLN A 123 ARG A 128 GLU A 182 HOH A 491 SITE 1 AC9 4 TYR A 446 PHE A 457 HOH A 587 HOH A 808 SITE 1 BC1 3 GLU A 143 LYS A 147 HOH A 809 SITE 1 BC2 5 LEU A 172 SER A 173 ARG A 174 ARG A 229 SITE 2 BC2 5 TYR A 368 SITE 1 BC3 5 GLU A 168 SER A 173 GLU A 175 SER A 176 SITE 2 BC3 5 HOH A 497 SITE 1 BC4 2 GLN A 243 HOH A 704 SITE 1 BC5 2 ALA A 247 ASP A 473 SITE 1 BC6 5 PHE A 217 GLU A 441 ALA A 443 GLU A 444 SITE 2 BC6 5 HOH A 640 SITE 1 BC7 2 ILE A 82 HOH A 561 SITE 1 BC8 4 ASP A 393 GLN A 406 HOH A 839 HOH A 848 SITE 1 BC9 4 GLN A 318 HOH A 548 HOH A 606 HOH A 722 SITE 1 CC1 5 TYR A 332 THR A 356 TRP A 360 GLY A 389 SITE 2 CC1 5 HOH A 502 SITE 1 CC2 6 THR A 356 MET A 358 TRP A 360 ALA A 390 SITE 2 CC2 6 ALA A 391 PHE A 450 SITE 1 CC3 10 GLN A 57 HIS A 158 ASN A 202 GLU A 203 SITE 2 CC3 10 TYR A 332 GLU A 387 TRP A 434 GLU A 441 SITE 3 CC3 10 TRP A 442 HOH A 672 CRYST1 70.331 71.002 86.978 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011497 0.00000