HEADER HYDROLASE 25-MAR-08 3CNH TITLE CRYSTAL STRUCTURE OF PREDICTED HYDROLASE OF HALOACID DEHALOGENASE-LIKE TITLE 2 SUPERFAMILY (NP_295428.1) FROM DEINOCOCCUS RADIODURANS AT 1.66 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279; SOURCE 5 ATCC: 13939; SOURCE 6 GENE: NP_295428.1, DR_1705; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_295428.1, PREDICTED HYDROLASE OF HALOACID DEHALOGENASE-LIKE KEYWDS 2 SUPERFAMILY, HALOACID DEHALOGENASE-LIKE HYDROLASE, STRUCTURAL KEYWDS 3 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 4 STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3CNH 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3CNH 1 REMARK LINK REVDAT 4 25-OCT-17 3CNH 1 REMARK REVDAT 3 13-JUL-11 3CNH 1 VERSN REVDAT 2 24-FEB-09 3CNH 1 VERSN REVDAT 1 08-APR-08 3CNH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PREDICTED HYDROLASE OF HALOACID JRNL TITL 2 DEHALOGENASE-LIKE SUPERFAMILY (NP_295428.1) FROM DEINOCOCCUS JRNL TITL 3 RADIODURANS AT 1.66 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3544 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2537 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4841 ; 1.669 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6108 ; 1.805 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 4.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;30.043 ;22.438 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;11.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;11.824 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4076 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 820 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2104 ; 1.095 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 846 ; 0.234 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3408 ; 2.019 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1440 ; 3.623 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1395 ; 5.774 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 67.3670 72.4930 107.3180 REMARK 3 T TENSOR REMARK 3 T11: -0.1089 T22: -0.0857 REMARK 3 T33: -0.2738 T12: -0.0011 REMARK 3 T13: -0.0154 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.7413 L22: 0.7202 REMARK 3 L33: 1.1873 L12: 0.0856 REMARK 3 L13: -0.2939 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0898 S13: 0.0237 REMARK 3 S21: -0.0374 S22: 0.0259 S23: 0.0569 REMARK 3 S31: -0.0363 S32: -0.1281 S33: -0.0382 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 92.1810 54.8150 106.2950 REMARK 3 T TENSOR REMARK 3 T11: -0.0837 T22: -0.0897 REMARK 3 T33: -0.2280 T12: 0.0039 REMARK 3 T13: 0.0054 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.5771 L22: 0.4151 REMARK 3 L33: 0.7298 L12: -0.2419 REMARK 3 L13: 0.1873 L23: 0.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.1521 S13: -0.1532 REMARK 3 S21: -0.0177 S22: -0.0335 S23: -0.0274 REMARK 3 S31: 0.0328 S32: 0.0720 S33: 0.0245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. NA ION, GLYCEROL (GOL), PHOSPHATE ION (PO4) AND PEG-8000 (PG4) REMARK 3 MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE MODELED. REMARK 3 5. THE OCCUPANCY OF PO4 AND GOL HAS BEEN REDUCED FOR OPTIMAL REMARK 3 REFINEMENT. REMARK 4 REMARK 4 3CNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97922, 0.97908 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 35.355 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NACL, 20.0% PEG 8000, REMARK 280 0.1M PHOSPHATE CITRATE PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.46150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.05400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.05400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.23075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.05400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.05400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.69225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.05400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.05400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.23075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.05400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.05400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.69225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.46150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CE NZ REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 29 CD OE1 NE2 REMARK 470 GLU B 61 CD OE1 OE2 REMARK 470 ARG B 77 CZ NH1 NH2 REMARK 470 GLU B 125 CD OE1 OE2 REMARK 470 GLU B 191 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PO4 B 201 O HOH B 304 2.06 REMARK 500 CE MSE B 1 OE2 GLU B 158 2.13 REMARK 500 CE MSE B 1 CG GLU B 158 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 2 C - N - CA ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 10 -62.64 -102.47 REMARK 500 VAL A 13 -72.64 -125.24 REMARK 500 TRP A 19 53.89 -159.05 REMARK 500 VAL A 64 -50.35 -127.32 REMARK 500 PHE A 65 45.40 -95.41 REMARK 500 GLU A 109 138.91 -174.71 REMARK 500 ILE B 10 -66.38 -101.42 REMARK 500 VAL B 13 -69.13 -131.89 REMARK 500 TRP B 19 42.60 -157.51 REMARK 500 VAL B 64 -48.87 -131.01 REMARK 500 PHE B 65 40.04 -94.16 REMARK 500 ASP B 70 35.73 -98.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 200 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 GLY A 11 O 85.5 REMARK 620 3 ASP A 165 OD1 79.8 103.8 REMARK 620 4 PO4 A 201 O2 95.8 74.6 175.4 REMARK 620 5 HOH A 203 O 92.0 167.3 87.9 93.3 REMARK 620 6 HOH A 204 O 162.6 83.5 89.8 94.2 101.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 200 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD2 REMARK 620 2 GLY B 11 O 83.7 REMARK 620 3 ASP B 165 OD1 78.5 104.8 REMARK 620 4 PO4 B 201 O3 94.9 73.4 173.3 REMARK 620 5 HOH B 303 O 87.1 163.2 86.9 93.5 REMARK 620 6 HOH B 406 O 157.5 91.9 81.4 105.0 101.8 REMARK 620 7 HOH B 406 O 162.4 91.0 119.1 67.5 93.6 39.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379311 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CNH A 1 199 UNP Q9RTQ1 Q9RTQ1_DEIRA 1 199 DBREF 3CNH B 1 199 UNP Q9RTQ1 Q9RTQ1_DEIRA 1 199 SEQADV 3CNH GLY A 0 UNP Q9RTQ1 EXPRESSION TAG SEQADV 3CNH GLY B 0 UNP Q9RTQ1 EXPRESSION TAG SEQRES 1 A 200 GLY MSE THR ILE LYS ALA LEU PHE TRP ASP ILE GLY GLY SEQRES 2 A 200 VAL LEU LEU THR ASN GLY TRP ASP ARG GLU GLN ARG ALA SEQRES 3 A 200 ASP VAL ALA GLN ARG PHE GLY LEU ASP THR ASP ASP PHE SEQRES 4 A 200 THR GLU ARG HIS ARG LEU ALA ALA PRO GLU LEU GLU LEU SEQRES 5 A 200 GLY ARG MSE THR LEU ALA GLU TYR LEU GLU GLN VAL VAL SEQRES 6 A 200 PHE TYR GLN PRO ARG ASP PHE THR PRO GLU ASP PHE ARG SEQRES 7 A 200 ALA VAL MSE GLU GLU GLN SER GLN PRO ARG PRO GLU VAL SEQRES 8 A 200 LEU ALA LEU ALA ARG ASP LEU GLY GLN ARG TYR ARG MSE SEQRES 9 A 200 TYR SER LEU ASN ASN GLU GLY ARG ASP LEU ASN GLU TYR SEQRES 10 A 200 ARG ILE ARG THR PHE GLY LEU GLY GLU PHE LEU LEU ALA SEQRES 11 A 200 PHE PHE THR SER SER ALA LEU GLY VAL MSE LYS PRO ASN SEQRES 12 A 200 PRO ALA MSE TYR ARG LEU GLY LEU THR LEU ALA GLN VAL SEQRES 13 A 200 ARG PRO GLU GLU ALA VAL MSE VAL ASP ASP ARG LEU GLN SEQRES 14 A 200 ASN VAL GLN ALA ALA ARG ALA VAL GLY MSE HIS ALA VAL SEQRES 15 A 200 GLN CYS VAL ASP ALA ALA GLN LEU ARG GLU GLU LEU ALA SEQRES 16 A 200 ALA LEU GLY VAL ARG SEQRES 1 B 200 GLY MSE THR ILE LYS ALA LEU PHE TRP ASP ILE GLY GLY SEQRES 2 B 200 VAL LEU LEU THR ASN GLY TRP ASP ARG GLU GLN ARG ALA SEQRES 3 B 200 ASP VAL ALA GLN ARG PHE GLY LEU ASP THR ASP ASP PHE SEQRES 4 B 200 THR GLU ARG HIS ARG LEU ALA ALA PRO GLU LEU GLU LEU SEQRES 5 B 200 GLY ARG MSE THR LEU ALA GLU TYR LEU GLU GLN VAL VAL SEQRES 6 B 200 PHE TYR GLN PRO ARG ASP PHE THR PRO GLU ASP PHE ARG SEQRES 7 B 200 ALA VAL MSE GLU GLU GLN SER GLN PRO ARG PRO GLU VAL SEQRES 8 B 200 LEU ALA LEU ALA ARG ASP LEU GLY GLN ARG TYR ARG MSE SEQRES 9 B 200 TYR SER LEU ASN ASN GLU GLY ARG ASP LEU ASN GLU TYR SEQRES 10 B 200 ARG ILE ARG THR PHE GLY LEU GLY GLU PHE LEU LEU ALA SEQRES 11 B 200 PHE PHE THR SER SER ALA LEU GLY VAL MSE LYS PRO ASN SEQRES 12 B 200 PRO ALA MSE TYR ARG LEU GLY LEU THR LEU ALA GLN VAL SEQRES 13 B 200 ARG PRO GLU GLU ALA VAL MSE VAL ASP ASP ARG LEU GLN SEQRES 14 B 200 ASN VAL GLN ALA ALA ARG ALA VAL GLY MSE HIS ALA VAL SEQRES 15 B 200 GLN CYS VAL ASP ALA ALA GLN LEU ARG GLU GLU LEU ALA SEQRES 16 B 200 ALA LEU GLY VAL ARG MODRES 3CNH MSE A 1 MET SELENOMETHIONINE MODRES 3CNH MSE A 54 MET SELENOMETHIONINE MODRES 3CNH MSE A 80 MET SELENOMETHIONINE MODRES 3CNH MSE A 103 MET SELENOMETHIONINE MODRES 3CNH MSE A 139 MET SELENOMETHIONINE MODRES 3CNH MSE A 145 MET SELENOMETHIONINE MODRES 3CNH MSE A 162 MET SELENOMETHIONINE MODRES 3CNH MSE A 178 MET SELENOMETHIONINE MODRES 3CNH MSE B 1 MET SELENOMETHIONINE MODRES 3CNH MSE B 54 MET SELENOMETHIONINE MODRES 3CNH MSE B 80 MET SELENOMETHIONINE MODRES 3CNH MSE B 103 MET SELENOMETHIONINE MODRES 3CNH MSE B 139 MET SELENOMETHIONINE MODRES 3CNH MSE B 145 MET SELENOMETHIONINE MODRES 3CNH MSE B 162 MET SELENOMETHIONINE MODRES 3CNH MSE B 178 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 54 13 HET MSE A 80 8 HET MSE A 103 8 HET MSE A 139 8 HET MSE A 145 8 HET MSE A 162 8 HET MSE A 178 8 HET MSE B 1 16 HET MSE B 54 8 HET MSE B 80 8 HET MSE B 103 8 HET MSE B 139 8 HET MSE B 145 8 HET MSE B 162 8 HET MSE B 178 8 HET NA A 200 1 HET PO4 A 201 5 HET PG4 A 202 10 HET NA B 200 1 HET PO4 B 201 5 HET GOL B 202 6 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 PG4 C8 H18 O5 FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *323(H2 O) HELIX 1 1 ASP A 20 GLY A 32 1 13 HELIX 2 2 ASP A 34 LEU A 51 1 18 HELIX 3 3 THR A 55 VAL A 64 1 10 HELIX 4 4 THR A 72 GLN A 83 1 12 HELIX 5 5 ARG A 87 GLY A 98 1 12 HELIX 6 6 GLY A 110 GLY A 122 1 13 HELIX 7 7 LEU A 123 PHE A 126 5 4 HELIX 8 8 SER A 133 GLY A 137 1 5 HELIX 9 9 ASN A 142 GLN A 154 1 13 HELIX 10 10 ARG A 156 GLU A 158 5 3 HELIX 11 11 ARG A 166 VAL A 176 1 11 HELIX 12 12 ASP A 185 LEU A 196 1 12 HELIX 13 13 ASP B 20 GLY B 32 1 13 HELIX 14 14 ASP B 34 LEU B 51 1 18 HELIX 15 15 THR B 55 VAL B 64 1 10 HELIX 16 16 THR B 72 GLN B 83 1 12 HELIX 17 17 ARG B 87 GLY B 98 1 12 HELIX 18 18 GLY B 110 PHE B 121 1 12 HELIX 19 19 GLY B 122 PHE B 126 5 5 HELIX 20 20 SER B 133 GLY B 137 1 5 HELIX 21 21 ASN B 142 GLN B 154 1 13 HELIX 22 22 ARG B 156 GLU B 158 5 3 HELIX 23 23 ARG B 166 VAL B 176 1 11 HELIX 24 24 ASP B 185 ALA B 195 1 11 SHEET 1 A 5 PHE A 130 THR A 132 0 SHEET 2 A 5 ARG A 102 ASN A 107 1 N SER A 105 O PHE A 131 SHEET 3 A 5 ALA A 5 TRP A 8 1 N TRP A 8 O TYR A 104 SHEET 4 A 5 ALA A 160 ASP A 164 1 O VAL A 161 N PHE A 7 SHEET 5 A 5 HIS A 179 GLN A 182 1 O VAL A 181 N MSE A 162 SHEET 1 B 5 PHE B 130 THR B 132 0 SHEET 2 B 5 ARG B 102 ASN B 107 1 N SER B 105 O PHE B 131 SHEET 3 B 5 ALA B 5 TRP B 8 1 N TRP B 8 O TYR B 104 SHEET 4 B 5 ALA B 160 ASP B 164 1 O VAL B 161 N PHE B 7 SHEET 5 B 5 HIS B 179 GLN B 182 1 O VAL B 181 N MSE B 162 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.32 LINK C ARG A 53 N MSE A 54 1555 1555 1.32 LINK C MSE A 54 N THR A 55 1555 1555 1.32 LINK C VAL A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLU A 81 1555 1555 1.32 LINK C ARG A 102 N MSE A 103 1555 1555 1.32 LINK C MSE A 103 N TYR A 104 1555 1555 1.32 LINK C VAL A 138 N MSE A 139 1555 1555 1.32 LINK C MSE A 139 N LYS A 140 1555 1555 1.32 LINK C ALA A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N TYR A 146 1555 1555 1.32 LINK C VAL A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N VAL A 163 1555 1555 1.34 LINK C GLY A 177 N MSE A 178 1555 1555 1.31 LINK C MSE A 178 N HIS A 179 1555 1555 1.33 LINK C AMSE B 1 N THR B 2 1555 1555 1.32 LINK C BMSE B 1 N THR B 2 1555 1555 1.33 LINK C ARG B 53 N MSE B 54 1555 1555 1.32 LINK C MSE B 54 N THR B 55 1555 1555 1.32 LINK C VAL B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N GLU B 81 1555 1555 1.32 LINK C ARG B 102 N MSE B 103 1555 1555 1.32 LINK C MSE B 103 N TYR B 104 1555 1555 1.33 LINK C VAL B 138 N MSE B 139 1555 1555 1.32 LINK C MSE B 139 N LYS B 140 1555 1555 1.32 LINK C ALA B 144 N MSE B 145 1555 1555 1.33 LINK C MSE B 145 N TYR B 146 1555 1555 1.32 LINK C VAL B 161 N MSE B 162 1555 1555 1.33 LINK C MSE B 162 N VAL B 163 1555 1555 1.32 LINK C GLY B 177 N MSE B 178 1555 1555 1.33 LINK C MSE B 178 N HIS B 179 1555 1555 1.33 LINK OD2 ASP A 9 NA NA A 200 1555 1555 2.38 LINK O GLY A 11 NA NA A 200 1555 1555 2.28 LINK OD1 ASP A 165 NA NA A 200 1555 1555 2.31 LINK NA NA A 200 O2 PO4 A 201 1555 1555 2.63 LINK NA NA A 200 O HOH A 203 1555 1555 2.25 LINK NA NA A 200 O HOH A 204 1555 1555 2.34 LINK OD2 ASP B 9 NA NA B 200 1555 1555 2.39 LINK O GLY B 11 NA NA B 200 1555 1555 2.29 LINK OD1 ASP B 165 NA NA B 200 1555 1555 2.36 LINK NA NA B 200 O3 PO4 B 201 1555 1555 2.56 LINK NA NA B 200 O HOH B 303 1555 1555 2.29 LINK NA NA B 200 O AHOH B 406 1555 1555 2.41 LINK NA NA B 200 O BHOH B 406 1555 1555 2.18 CISPEP 1 LYS A 140 PRO A 141 0 5.50 CISPEP 2 LYS B 140 PRO B 141 0 4.09 SITE 1 AC1 3 ASP A 9 GLY A 11 ASP A 165 SITE 1 AC2 3 ASP B 9 GLY B 11 ASP B 165 SITE 1 AC3 6 ASP A 9 ILE A 10 GLY A 11 ASN A 107 SITE 2 AC3 6 ASN A 108 LYS A 140 SITE 1 AC4 6 ASP B 9 ILE B 10 GLY B 11 ASN B 107 SITE 2 AC4 6 ASN B 108 LYS B 140 SITE 1 AC5 3 ARG A 100 TYR A 101 GLY B 98 SITE 1 AC6 4 LEU B 56 ALA B 57 PRO B 73 ARG B 77 CRYST1 74.108 74.108 160.923 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006214 0.00000