data_3CNO # _entry.id 3CNO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CNO pdb_00003cno 10.2210/pdb3cno/pdb RCSB RCSB046994 ? ? WWPDB D_1000046994 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3CNL . unspecified PDB 3CNN . unspecified # _pdbx_database_status.entry_id 3CNO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-03-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, D.J.' 1 'Jang, J.Y.' 2 'Yoon, H.-J.' 3 'Suh, S.W.' 4 # _citation.id primary _citation.title 'Crystal structure of YlqF, a circularly permuted GTPase: Implications for its GTPase activation in 50 S ribosomal subunit assembly' _citation.journal_abbrev Proteins _citation.journal_volume 72 _citation.page_first 1363 _citation.page_last 1370 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18536017 _citation.pdbx_database_id_DOI 10.1002/prot.22112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, D.J.' 1 ? primary 'Jang, J.Y.' 2 ? primary 'Yoon, H.-J.' 3 ? primary 'Suh, S.W.' 4 ? # _cell.length_a 34.222 _cell.length_b 76.660 _cell.length_c 104.895 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3CNO _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3CNO _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative uncharacterized protein' 29642.502 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 water nat water 18.015 105 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YlqF # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRVIT THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIF SEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIGIESSFSEFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGKA GRVSFERPEDITPVQQEQTRGV ; _entity_poly.pdbx_seq_one_letter_code_can ;MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRVIT THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIF SEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIGIESSFSEFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGKA GRVSFERPEDITPVQQEQTRGV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 TRP n 1 4 TYR n 1 5 PRO n 1 6 GLY n 1 7 HIS n 1 8 ILE n 1 9 GLU n 1 10 LYS n 1 11 ALA n 1 12 LYS n 1 13 ARG n 1 14 GLN n 1 15 ILE n 1 16 LYS n 1 17 ASP n 1 18 LEU n 1 19 LEU n 1 20 ARG n 1 21 LEU n 1 22 VAL n 1 23 ASN n 1 24 THR n 1 25 VAL n 1 26 VAL n 1 27 GLU n 1 28 VAL n 1 29 ARG n 1 30 ASP n 1 31 ALA n 1 32 ARG n 1 33 ALA n 1 34 PRO n 1 35 PHE n 1 36 ALA n 1 37 THR n 1 38 SER n 1 39 ALA n 1 40 TYR n 1 41 GLY n 1 42 VAL n 1 43 ASP n 1 44 PHE n 1 45 SER n 1 46 ARG n 1 47 LYS n 1 48 GLU n 1 49 THR n 1 50 ILE n 1 51 ILE n 1 52 LEU n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 VAL n 1 57 ASP n 1 58 ILE n 1 59 ALA n 1 60 ASP n 1 61 GLU n 1 62 LYS n 1 63 THR n 1 64 THR n 1 65 LYS n 1 66 LYS n 1 67 TRP n 1 68 VAL n 1 69 GLU n 1 70 PHE n 1 71 PHE n 1 72 LYS n 1 73 LYS n 1 74 GLN n 1 75 GLY n 1 76 LYS n 1 77 ARG n 1 78 VAL n 1 79 ILE n 1 80 THR n 1 81 THR n 1 82 HIS n 1 83 LYS n 1 84 GLY n 1 85 GLU n 1 86 PRO n 1 87 ARG n 1 88 LYS n 1 89 VAL n 1 90 LEU n 1 91 LEU n 1 92 LYS n 1 93 LYS n 1 94 LEU n 1 95 SER n 1 96 PHE n 1 97 ASP n 1 98 ARG n 1 99 LEU n 1 100 ALA n 1 101 ARG n 1 102 VAL n 1 103 LEU n 1 104 ILE n 1 105 VAL n 1 106 GLY n 1 107 VAL n 1 108 PRO n 1 109 ASN n 1 110 THR n 1 111 GLY n 1 112 LYS n 1 113 SER n 1 114 THR n 1 115 ILE n 1 116 ILE n 1 117 ASN n 1 118 LYS n 1 119 LEU n 1 120 LYS n 1 121 GLY n 1 122 LYS n 1 123 ARG n 1 124 ALA n 1 125 SER n 1 126 SER n 1 127 VAL n 1 128 GLY n 1 129 ALA n 1 130 GLN n 1 131 PRO n 1 132 GLY n 1 133 ILE n 1 134 THR n 1 135 LYS n 1 136 GLY n 1 137 ILE n 1 138 GLN n 1 139 TRP n 1 140 PHE n 1 141 SER n 1 142 LEU n 1 143 GLU n 1 144 ASN n 1 145 GLY n 1 146 VAL n 1 147 LYS n 1 148 ILE n 1 149 LEU n 1 150 ASP n 1 151 THR n 1 152 PRO n 1 153 GLY n 1 154 ILE n 1 155 LEU n 1 156 TYR n 1 157 LYS n 1 158 ASN n 1 159 ILE n 1 160 PHE n 1 161 SER n 1 162 GLU n 1 163 ASP n 1 164 LEU n 1 165 ALA n 1 166 ALA n 1 167 LYS n 1 168 LEU n 1 169 LEU n 1 170 LEU n 1 171 VAL n 1 172 GLY n 1 173 SER n 1 174 LEU n 1 175 PRO n 1 176 VAL n 1 177 GLU n 1 178 ARG n 1 179 ILE n 1 180 GLU n 1 181 ASP n 1 182 GLN n 1 183 ARG n 1 184 ILE n 1 185 PHE n 1 186 GLU n 1 187 ARG n 1 188 ALA n 1 189 PHE n 1 190 GLU n 1 191 ILE n 1 192 PHE n 1 193 ALA n 1 194 ARG n 1 195 SER n 1 196 ILE n 1 197 GLY n 1 198 ILE n 1 199 GLU n 1 200 SER n 1 201 SER n 1 202 PHE n 1 203 SER n 1 204 GLU n 1 205 PHE n 1 206 PHE n 1 207 GLU n 1 208 ASP n 1 209 PHE n 1 210 ALA n 1 211 ARG n 1 212 LYS n 1 213 ARG n 1 214 GLY n 1 215 LEU n 1 216 LEU n 1 217 LYS n 1 218 LYS n 1 219 GLY n 1 220 GLY n 1 221 VAL n 1 222 PRO n 1 223 ASP n 1 224 ILE n 1 225 GLU n 1 226 ARG n 1 227 ALA n 1 228 LEU n 1 229 MET n 1 230 LEU n 1 231 PHE n 1 232 PHE n 1 233 THR n 1 234 GLU n 1 235 VAL n 1 236 ALA n 1 237 GLN n 1 238 GLY n 1 239 LYS n 1 240 ALA n 1 241 GLY n 1 242 ARG n 1 243 VAL n 1 244 SER n 1 245 PHE n 1 246 GLU n 1 247 ARG n 1 248 PRO n 1 249 GLU n 1 250 ASP n 1 251 ILE n 1 252 THR n 1 253 PRO n 1 254 VAL n 1 255 GLN n 1 256 GLN n 1 257 GLU n 1 258 GLN n 1 259 THR n 1 260 ARG n 1 261 GLY n 1 262 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM0768 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WZM6_THEMA _struct_ref.pdbx_db_accession Q9WZM6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRVIT THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIF SEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIGIESSFSEFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGKA GRVSFERPEDITPVQQEQTRGV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CNO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZM6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 262 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 262 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3CNO _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100mM HEPES (pH 7.5), 5% (v/v) isopropanol, 20% (w/v) polyethylene glycol 4000, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-09-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.23985 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 6C1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.23985 _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 6C1 # _reflns.entry_id 3CNO _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 20 _reflns.number_all 12683 _reflns.number_obs 12683 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3CNO _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 19.070 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.830 _refine.ls_number_reflns_obs 12639 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.22103 _refine.ls_R_factor_R_work 0.21482 _refine.ls_R_factor_R_free 0.27585 _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1258 _refine.B_iso_mean 43.998 _refine.aniso_B[1][1] 0.120 _refine.aniso_B[2][2] 0.540 _refine.aniso_B[3][3] -0.660 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.pdbx_overall_ESU_R 0.382 _refine.pdbx_overall_ESU_R_Free 0.274 _refine.overall_SU_ML 0.217 _refine.overall_SU_B 9.105 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB ENTRY 1PUJ' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1824 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 1957 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 19.070 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1883 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2530 1.371 1.997 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 225 6.267 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 82 35.806 22.683 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 365 18.150 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19 11.606 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 285 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1360 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 865 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1272 0.304 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 106 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.235 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1152 0.682 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1815 1.229 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 815 1.330 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 715 2.227 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.304 _refine_ls_shell.d_res_low 2.362 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 87.500 _refine_ls_shell.number_reflns_R_work 722 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.R_factor_R_free 0.366 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 791 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CNO _struct.title 'GDP-bound structue of TM YlqF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CNO _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'YlqF, circular permutation, GDP, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 14 ? LEU A 21 ? GLN A 14 LEU A 21 1 ? 8 HELX_P HELX_P2 2 LYS A 55 ? ALA A 59 ? LYS A 55 ALA A 59 5 ? 5 HELX_P HELX_P3 3 ASP A 60 ? LYS A 73 ? ASP A 60 LYS A 73 1 ? 14 HELX_P HELX_P4 4 PRO A 86 ? SER A 95 ? PRO A 86 SER A 95 1 ? 10 HELX_P HELX_P5 5 GLY A 111 ? GLY A 121 ? GLY A 111 GLY A 121 1 ? 11 HELX_P HELX_P6 6 SER A 161 ? VAL A 171 ? SER A 161 VAL A 171 1 ? 11 HELX_P HELX_P7 7 PRO A 175 ? ILE A 179 ? PRO A 175 ILE A 179 5 ? 5 HELX_P HELX_P8 8 ASP A 181 ? GLY A 197 ? ASP A 181 GLY A 197 1 ? 17 HELX_P HELX_P9 9 SER A 201 ? ARG A 213 ? SER A 201 ARG A 213 1 ? 13 HELX_P HELX_P10 10 ASP A 223 ? GLN A 237 ? ASP A 223 GLN A 237 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 13 A . ? ARG 13 A GLN 14 A ? GLN 14 A 1 -5.78 2 LYS 120 A . ? LYS 120 A GLY 121 A ? GLY 121 A 1 25.35 3 GLY 121 A . ? GLY 121 A LYS 122 A ? LYS 122 A 1 28.67 4 GLU 249 A . ? GLU 249 A ASP 250 A ? ASP 250 A 1 -3.67 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 78 ? THR A 80 ? VAL A 78 THR A 80 A 2 GLU A 48 ? ASN A 54 ? GLU A 48 ASN A 54 A 3 THR A 24 ? ASP A 30 ? THR A 24 ASP A 30 A 4 ARG A 101 ? GLY A 106 ? ARG A 101 GLY A 106 A 5 LYS A 147 ? LEU A 149 ? LYS A 147 LEU A 149 A 6 TRP A 139 ? SER A 141 ? TRP A 139 SER A 141 B 1 VAL A 78 ? THR A 80 ? VAL A 78 THR A 80 B 2 GLU A 48 ? ASN A 54 ? GLU A 48 ASN A 54 B 3 THR A 24 ? ASP A 30 ? THR A 24 ASP A 30 B 4 ARG A 101 ? GLY A 106 ? ARG A 101 GLY A 106 B 5 GLY A 153 ? ILE A 154 ? GLY A 153 ILE A 154 C 1 LEU A 216 ? LYS A 217 ? LEU A 216 LYS A 217 C 2 VAL A 221 ? PRO A 222 ? VAL A 221 PRO A 222 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 79 ? O ILE A 79 N ILE A 51 ? N ILE A 51 A 2 3 O GLU A 48 ? O GLU A 48 N VAL A 25 ? N VAL A 25 A 3 4 N VAL A 26 ? N VAL A 26 O LEU A 103 ? O LEU A 103 A 4 5 N VAL A 102 ? N VAL A 102 O LYS A 147 ? O LYS A 147 A 5 6 O ILE A 148 ? O ILE A 148 N PHE A 140 ? N PHE A 140 B 1 2 O ILE A 79 ? O ILE A 79 N ILE A 51 ? N ILE A 51 B 2 3 O GLU A 48 ? O GLU A 48 N VAL A 25 ? N VAL A 25 B 3 4 N VAL A 26 ? N VAL A 26 O LEU A 103 ? O LEU A 103 B 4 5 N ILE A 104 ? N ILE A 104 O GLY A 153 ? O GLY A 153 C 1 2 N LYS A 217 ? N LYS A 217 O VAL A 221 ? O VAL A 221 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GDP _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 19 _struct_site.details 'BINDING SITE FOR RESIDUE GDP A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 ASN A 54 ? ASN A 54 . ? 1_555 ? 2 AC1 19 LYS A 55 ? LYS A 55 . ? 1_555 ? 3 AC1 19 ASP A 57 ? ASP A 57 . ? 1_555 ? 4 AC1 19 ILE A 58 ? ILE A 58 . ? 1_555 ? 5 AC1 19 LYS A 73 ? LYS A 73 . ? 1_455 ? 6 AC1 19 HIS A 82 ? HIS A 82 . ? 1_555 ? 7 AC1 19 LYS A 83 ? LYS A 83 . ? 1_555 ? 8 AC1 19 ASN A 109 ? ASN A 109 . ? 1_555 ? 9 AC1 19 THR A 110 ? THR A 110 . ? 1_555 ? 10 AC1 19 GLY A 111 ? GLY A 111 . ? 1_555 ? 11 AC1 19 LYS A 112 ? LYS A 112 . ? 1_555 ? 12 AC1 19 SER A 113 ? SER A 113 . ? 1_555 ? 13 AC1 19 THR A 114 ? THR A 114 . ? 1_555 ? 14 AC1 19 HOH C . ? HOH A 540 . ? 1_555 ? 15 AC1 19 HOH C . ? HOH A 561 . ? 1_555 ? 16 AC1 19 HOH C . ? HOH A 582 . ? 1_555 ? 17 AC1 19 HOH C . ? HOH A 583 . ? 1_555 ? 18 AC1 19 HOH C . ? HOH A 594 . ? 1_555 ? 19 AC1 19 HOH C . ? HOH A 604 . ? 1_555 ? # _atom_sites.entry_id 3CNO _atom_sites.fract_transf_matrix[1][1] 0.029221 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013045 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009533 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 TRP 3 3 ? ? ? A . n A 1 4 TYR 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 HIS 7 7 ? ? ? A . n A 1 8 ILE 8 8 ? ? ? A . n A 1 9 GLU 9 9 ? ? ? A . n A 1 10 LYS 10 10 ? ? ? A . n A 1 11 ALA 11 11 ? ? ? A . n A 1 12 LYS 12 12 ? ? ? A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 SER 125 125 ? ? ? A . n A 1 126 SER 126 126 ? ? ? A . n A 1 127 VAL 127 127 ? ? ? A . n A 1 128 GLY 128 128 ? ? ? A . n A 1 129 ALA 129 129 ? ? ? A . n A 1 130 GLN 130 130 ? ? ? A . n A 1 131 PRO 131 131 ? ? ? A . n A 1 132 GLY 132 132 ? ? ? A . n A 1 133 ILE 133 133 ? ? ? A . n A 1 134 THR 134 134 ? ? ? A . n A 1 135 LYS 135 135 ? ? ? A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 TRP 139 139 139 TRP TRP A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 ASN 158 158 158 ASN ASN A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 SER 173 173 173 SER SER A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 GLN 182 182 182 GLN GLN A . n A 1 183 ARG 183 183 183 ARG ARG A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 PHE 185 185 185 PHE PHE A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 PHE 192 192 192 PHE PHE A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 ILE 198 198 198 ILE ILE A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 PHE 202 202 202 PHE PHE A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 PHE 209 209 209 PHE PHE A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 ARG 213 213 213 ARG ARG A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 ASP 223 223 223 ASP ASP A . n A 1 224 ILE 224 224 224 ILE ILE A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 ARG 226 226 226 ARG ARG A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 MET 229 229 229 MET MET A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 PHE 231 231 231 PHE PHE A . n A 1 232 PHE 232 232 232 PHE PHE A . n A 1 233 THR 233 233 233 THR THR A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 ALA 236 236 236 ALA ALA A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 PRO 248 248 248 PRO PRO A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 ASP 250 250 250 ASP ASP A . n A 1 251 ILE 251 251 ? ? ? A . n A 1 252 THR 252 252 ? ? ? A . n A 1 253 PRO 253 253 ? ? ? A . n A 1 254 VAL 254 254 ? ? ? A . n A 1 255 GLN 255 255 ? ? ? A . n A 1 256 GLN 256 256 ? ? ? A . n A 1 257 GLU 257 257 ? ? ? A . n A 1 258 GLN 258 258 ? ? ? A . n A 1 259 THR 259 259 ? ? ? A . n A 1 260 ARG 260 260 ? ? ? A . n A 1 261 GLY 261 261 ? ? ? A . n A 1 262 VAL 262 262 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 501 501 GDP GDP A . C 3 HOH 1 502 1 HOH HOH A . C 3 HOH 2 503 2 HOH HOH A . C 3 HOH 3 504 3 HOH HOH A . C 3 HOH 4 505 4 HOH HOH A . C 3 HOH 5 506 5 HOH HOH A . C 3 HOH 6 507 6 HOH HOH A . C 3 HOH 7 508 7 HOH HOH A . C 3 HOH 8 509 8 HOH HOH A . C 3 HOH 9 510 9 HOH HOH A . C 3 HOH 10 511 10 HOH HOH A . C 3 HOH 11 512 11 HOH HOH A . C 3 HOH 12 513 12 HOH HOH A . C 3 HOH 13 514 13 HOH HOH A . C 3 HOH 14 515 14 HOH HOH A . C 3 HOH 15 516 15 HOH HOH A . C 3 HOH 16 517 16 HOH HOH A . C 3 HOH 17 518 17 HOH HOH A . C 3 HOH 18 519 18 HOH HOH A . C 3 HOH 19 520 19 HOH HOH A . C 3 HOH 20 521 20 HOH HOH A . C 3 HOH 21 522 21 HOH HOH A . C 3 HOH 22 523 22 HOH HOH A . C 3 HOH 23 524 23 HOH HOH A . C 3 HOH 24 525 24 HOH HOH A . C 3 HOH 25 526 25 HOH HOH A . C 3 HOH 26 527 26 HOH HOH A . C 3 HOH 27 528 27 HOH HOH A . C 3 HOH 28 529 29 HOH HOH A . C 3 HOH 29 530 30 HOH HOH A . C 3 HOH 30 531 31 HOH HOH A . C 3 HOH 31 532 32 HOH HOH A . C 3 HOH 32 533 33 HOH HOH A . C 3 HOH 33 534 34 HOH HOH A . C 3 HOH 34 535 35 HOH HOH A . C 3 HOH 35 536 36 HOH HOH A . C 3 HOH 36 537 38 HOH HOH A . C 3 HOH 37 538 39 HOH HOH A . C 3 HOH 38 539 41 HOH HOH A . C 3 HOH 39 540 42 HOH HOH A . C 3 HOH 40 541 43 HOH HOH A . C 3 HOH 41 542 44 HOH HOH A . C 3 HOH 42 543 46 HOH HOH A . C 3 HOH 43 544 47 HOH HOH A . C 3 HOH 44 545 49 HOH HOH A . C 3 HOH 45 546 52 HOH HOH A . C 3 HOH 46 547 53 HOH HOH A . C 3 HOH 47 548 54 HOH HOH A . C 3 HOH 48 549 55 HOH HOH A . C 3 HOH 49 550 56 HOH HOH A . C 3 HOH 50 551 57 HOH HOH A . C 3 HOH 51 552 58 HOH HOH A . C 3 HOH 52 553 59 HOH HOH A . C 3 HOH 53 554 60 HOH HOH A . C 3 HOH 54 555 61 HOH HOH A . C 3 HOH 55 556 62 HOH HOH A . C 3 HOH 56 557 63 HOH HOH A . C 3 HOH 57 558 64 HOH HOH A . C 3 HOH 58 559 65 HOH HOH A . C 3 HOH 59 560 66 HOH HOH A . C 3 HOH 60 561 67 HOH HOH A . C 3 HOH 61 562 68 HOH HOH A . C 3 HOH 62 563 69 HOH HOH A . C 3 HOH 63 564 70 HOH HOH A . C 3 HOH 64 565 71 HOH HOH A . C 3 HOH 65 566 72 HOH HOH A . C 3 HOH 66 567 73 HOH HOH A . C 3 HOH 67 568 74 HOH HOH A . C 3 HOH 68 569 75 HOH HOH A . C 3 HOH 69 570 76 HOH HOH A . C 3 HOH 70 571 77 HOH HOH A . C 3 HOH 71 572 78 HOH HOH A . C 3 HOH 72 573 79 HOH HOH A . C 3 HOH 73 574 80 HOH HOH A . C 3 HOH 74 575 81 HOH HOH A . C 3 HOH 75 576 82 HOH HOH A . C 3 HOH 76 577 83 HOH HOH A . C 3 HOH 77 578 84 HOH HOH A . C 3 HOH 78 579 85 HOH HOH A . C 3 HOH 79 580 86 HOH HOH A . C 3 HOH 80 581 87 HOH HOH A . C 3 HOH 81 582 89 HOH HOH A . C 3 HOH 82 583 90 HOH HOH A . C 3 HOH 83 584 91 HOH HOH A . C 3 HOH 84 585 92 HOH HOH A . C 3 HOH 85 586 94 HOH HOH A . C 3 HOH 86 587 95 HOH HOH A . C 3 HOH 87 588 96 HOH HOH A . C 3 HOH 88 589 97 HOH HOH A . C 3 HOH 89 590 98 HOH HOH A . C 3 HOH 90 591 99 HOH HOH A . C 3 HOH 91 592 100 HOH HOH A . C 3 HOH 92 593 101 HOH HOH A . C 3 HOH 93 594 102 HOH HOH A . C 3 HOH 94 595 104 HOH HOH A . C 3 HOH 95 596 105 HOH HOH A . C 3 HOH 96 597 106 HOH HOH A . C 3 HOH 97 598 107 HOH HOH A . C 3 HOH 98 599 109 HOH HOH A . C 3 HOH 99 600 110 HOH HOH A . C 3 HOH 100 601 111 HOH HOH A . C 3 HOH 101 602 112 HOH HOH A . C 3 HOH 102 603 113 HOH HOH A . C 3 HOH 103 604 114 HOH HOH A . C 3 HOH 104 605 115 HOH HOH A . C 3 HOH 105 606 116 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 39 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -91.01 _pdbx_validate_torsion.psi 58.02 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A TRP 3 ? A TRP 3 4 1 Y 1 A TYR 4 ? A TYR 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A HIS 7 ? A HIS 7 8 1 Y 1 A ILE 8 ? A ILE 8 9 1 Y 1 A GLU 9 ? A GLU 9 10 1 Y 1 A LYS 10 ? A LYS 10 11 1 Y 1 A ALA 11 ? A ALA 11 12 1 Y 1 A LYS 12 ? A LYS 12 13 1 Y 1 A SER 125 ? A SER 125 14 1 Y 1 A SER 126 ? A SER 126 15 1 Y 1 A VAL 127 ? A VAL 127 16 1 Y 1 A GLY 128 ? A GLY 128 17 1 Y 1 A ALA 129 ? A ALA 129 18 1 Y 1 A GLN 130 ? A GLN 130 19 1 Y 1 A PRO 131 ? A PRO 131 20 1 Y 1 A GLY 132 ? A GLY 132 21 1 Y 1 A ILE 133 ? A ILE 133 22 1 Y 1 A THR 134 ? A THR 134 23 1 Y 1 A LYS 135 ? A LYS 135 24 1 Y 1 A ILE 251 ? A ILE 251 25 1 Y 1 A THR 252 ? A THR 252 26 1 Y 1 A PRO 253 ? A PRO 253 27 1 Y 1 A VAL 254 ? A VAL 254 28 1 Y 1 A GLN 255 ? A GLN 255 29 1 Y 1 A GLN 256 ? A GLN 256 30 1 Y 1 A GLU 257 ? A GLU 257 31 1 Y 1 A GLN 258 ? A GLN 258 32 1 Y 1 A THR 259 ? A THR 259 33 1 Y 1 A ARG 260 ? A ARG 260 34 1 Y 1 A GLY 261 ? A GLY 261 35 1 Y 1 A VAL 262 ? A VAL 262 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GDP PB P N N 74 GDP O1B O N N 75 GDP O2B O N N 76 GDP O3B O N N 77 GDP O3A O N N 78 GDP PA P N N 79 GDP O1A O N N 80 GDP O2A O N N 81 GDP "O5'" O N N 82 GDP "C5'" C N N 83 GDP "C4'" C N R 84 GDP "O4'" O N N 85 GDP "C3'" C N S 86 GDP "O3'" O N N 87 GDP "C2'" C N R 88 GDP "O2'" O N N 89 GDP "C1'" C N R 90 GDP N9 N Y N 91 GDP C8 C Y N 92 GDP N7 N Y N 93 GDP C5 C Y N 94 GDP C6 C N N 95 GDP O6 O N N 96 GDP N1 N N N 97 GDP C2 C N N 98 GDP N2 N N N 99 GDP N3 N N N 100 GDP C4 C Y N 101 GDP HOB2 H N N 102 GDP HOB3 H N N 103 GDP HOA2 H N N 104 GDP "H5'" H N N 105 GDP "H5''" H N N 106 GDP "H4'" H N N 107 GDP "H3'" H N N 108 GDP "HO3'" H N N 109 GDP "H2'" H N N 110 GDP "HO2'" H N N 111 GDP "H1'" H N N 112 GDP H8 H N N 113 GDP HN1 H N N 114 GDP HN21 H N N 115 GDP HN22 H N N 116 GLN N N N N 117 GLN CA C N S 118 GLN C C N N 119 GLN O O N N 120 GLN CB C N N 121 GLN CG C N N 122 GLN CD C N N 123 GLN OE1 O N N 124 GLN NE2 N N N 125 GLN OXT O N N 126 GLN H H N N 127 GLN H2 H N N 128 GLN HA H N N 129 GLN HB2 H N N 130 GLN HB3 H N N 131 GLN HG2 H N N 132 GLN HG3 H N N 133 GLN HE21 H N N 134 GLN HE22 H N N 135 GLN HXT H N N 136 GLU N N N N 137 GLU CA C N S 138 GLU C C N N 139 GLU O O N N 140 GLU CB C N N 141 GLU CG C N N 142 GLU CD C N N 143 GLU OE1 O N N 144 GLU OE2 O N N 145 GLU OXT O N N 146 GLU H H N N 147 GLU H2 H N N 148 GLU HA H N N 149 GLU HB2 H N N 150 GLU HB3 H N N 151 GLU HG2 H N N 152 GLU HG3 H N N 153 GLU HE2 H N N 154 GLU HXT H N N 155 GLY N N N N 156 GLY CA C N N 157 GLY C C N N 158 GLY O O N N 159 GLY OXT O N N 160 GLY H H N N 161 GLY H2 H N N 162 GLY HA2 H N N 163 GLY HA3 H N N 164 GLY HXT H N N 165 HIS N N N N 166 HIS CA C N S 167 HIS C C N N 168 HIS O O N N 169 HIS CB C N N 170 HIS CG C Y N 171 HIS ND1 N Y N 172 HIS CD2 C Y N 173 HIS CE1 C Y N 174 HIS NE2 N Y N 175 HIS OXT O N N 176 HIS H H N N 177 HIS H2 H N N 178 HIS HA H N N 179 HIS HB2 H N N 180 HIS HB3 H N N 181 HIS HD1 H N N 182 HIS HD2 H N N 183 HIS HE1 H N N 184 HIS HE2 H N N 185 HIS HXT H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 ILE N N N N 190 ILE CA C N S 191 ILE C C N N 192 ILE O O N N 193 ILE CB C N S 194 ILE CG1 C N N 195 ILE CG2 C N N 196 ILE CD1 C N N 197 ILE OXT O N N 198 ILE H H N N 199 ILE H2 H N N 200 ILE HA H N N 201 ILE HB H N N 202 ILE HG12 H N N 203 ILE HG13 H N N 204 ILE HG21 H N N 205 ILE HG22 H N N 206 ILE HG23 H N N 207 ILE HD11 H N N 208 ILE HD12 H N N 209 ILE HD13 H N N 210 ILE HXT H N N 211 LEU N N N N 212 LEU CA C N S 213 LEU C C N N 214 LEU O O N N 215 LEU CB C N N 216 LEU CG C N N 217 LEU CD1 C N N 218 LEU CD2 C N N 219 LEU OXT O N N 220 LEU H H N N 221 LEU H2 H N N 222 LEU HA H N N 223 LEU HB2 H N N 224 LEU HB3 H N N 225 LEU HG H N N 226 LEU HD11 H N N 227 LEU HD12 H N N 228 LEU HD13 H N N 229 LEU HD21 H N N 230 LEU HD22 H N N 231 LEU HD23 H N N 232 LEU HXT H N N 233 LYS N N N N 234 LYS CA C N S 235 LYS C C N N 236 LYS O O N N 237 LYS CB C N N 238 LYS CG C N N 239 LYS CD C N N 240 LYS CE C N N 241 LYS NZ N N N 242 LYS OXT O N N 243 LYS H H N N 244 LYS H2 H N N 245 LYS HA H N N 246 LYS HB2 H N N 247 LYS HB3 H N N 248 LYS HG2 H N N 249 LYS HG3 H N N 250 LYS HD2 H N N 251 LYS HD3 H N N 252 LYS HE2 H N N 253 LYS HE3 H N N 254 LYS HZ1 H N N 255 LYS HZ2 H N N 256 LYS HZ3 H N N 257 LYS HXT H N N 258 MET N N N N 259 MET CA C N S 260 MET C C N N 261 MET O O N N 262 MET CB C N N 263 MET CG C N N 264 MET SD S N N 265 MET CE C N N 266 MET OXT O N N 267 MET H H N N 268 MET H2 H N N 269 MET HA H N N 270 MET HB2 H N N 271 MET HB3 H N N 272 MET HG2 H N N 273 MET HG3 H N N 274 MET HE1 H N N 275 MET HE2 H N N 276 MET HE3 H N N 277 MET HXT H N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GDP PB O1B doub N N 70 GDP PB O2B sing N N 71 GDP PB O3B sing N N 72 GDP PB O3A sing N N 73 GDP O2B HOB2 sing N N 74 GDP O3B HOB3 sing N N 75 GDP O3A PA sing N N 76 GDP PA O1A doub N N 77 GDP PA O2A sing N N 78 GDP PA "O5'" sing N N 79 GDP O2A HOA2 sing N N 80 GDP "O5'" "C5'" sing N N 81 GDP "C5'" "C4'" sing N N 82 GDP "C5'" "H5'" sing N N 83 GDP "C5'" "H5''" sing N N 84 GDP "C4'" "O4'" sing N N 85 GDP "C4'" "C3'" sing N N 86 GDP "C4'" "H4'" sing N N 87 GDP "O4'" "C1'" sing N N 88 GDP "C3'" "O3'" sing N N 89 GDP "C3'" "C2'" sing N N 90 GDP "C3'" "H3'" sing N N 91 GDP "O3'" "HO3'" sing N N 92 GDP "C2'" "O2'" sing N N 93 GDP "C2'" "C1'" sing N N 94 GDP "C2'" "H2'" sing N N 95 GDP "O2'" "HO2'" sing N N 96 GDP "C1'" N9 sing N N 97 GDP "C1'" "H1'" sing N N 98 GDP N9 C8 sing Y N 99 GDP N9 C4 sing Y N 100 GDP C8 N7 doub Y N 101 GDP C8 H8 sing N N 102 GDP N7 C5 sing Y N 103 GDP C5 C6 sing N N 104 GDP C5 C4 doub Y N 105 GDP C6 O6 doub N N 106 GDP C6 N1 sing N N 107 GDP N1 C2 sing N N 108 GDP N1 HN1 sing N N 109 GDP C2 N2 sing N N 110 GDP C2 N3 doub N N 111 GDP N2 HN21 sing N N 112 GDP N2 HN22 sing N N 113 GDP N3 C4 sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PUJ _pdbx_initial_refinement_model.details 'PDB ENTRY 1PUJ' #