HEADER TRANSFERASE 28-MAR-08 3COK TITLE CRYSTAL STRUCTURE OF PLK4 KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN: RESIDUES 2-275; COMPND 5 SYNONYM: POLO-LIKE KINASE 4, PLK-4, SERINE/THREONINE-PROTEIN KINASE COMPND 6 SAK, SERINE/THREONINE-PROTEIN KINASE 18; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK4, SAK, STK18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGX4 KEYWDS PLK4, POLO-LIKE KINASE 4, SAK, STK18, PSI, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 4 PHOSPHOPROTEIN, POLYMORPHISM, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ATWELL,S.K.BURLEY,A.HOULE,B.LEON,L.A.PELLETIER,J.M.SAUDER,NEW YORK AUTHOR 2 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 03-APR-24 3COK 1 REMARK REVDAT 8 21-FEB-24 3COK 1 REMARK REVDAT 7 03-FEB-21 3COK 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 14-NOV-18 3COK 1 AUTHOR REVDAT 5 25-OCT-17 3COK 1 REMARK REVDAT 4 09-JUN-09 3COK 1 REVDAT REVDAT 3 24-FEB-09 3COK 1 VERSN REVDAT 2 23-DEC-08 3COK 1 AUTHOR KEYWDS REVDAT 1 15-APR-08 3COK 0 JRNL AUTH S.ATWELL,S.K.BURLEY,A.HOULE,B.LEON,L.A.PELLETIER,J.M.SAUDER JRNL TITL CRYSTAL STRUCTURE OF PLK4 KINASE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 25844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.505 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3COK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : KOHZU 111 DIAMOND REMARK 200 OPTICS : KV MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: UNRELEASED STRUCTURE OF AURA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE PH 6.0, 16% PEG REMARK 280 4000, 200MM AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.25800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.07550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.25800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.07550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 162 REMARK 465 PRO A 163 REMARK 465 HIS A 164 REMARK 465 GLU A 165 REMARK 465 LYS A 166 REMARK 465 HIS A 167 REMARK 465 TYR A 168 REMARK 465 THR A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 GLY A 172 REMARK 465 THR A 173 REMARK 465 PRO A 174 REMARK 465 ASN A 175 REMARK 465 TYR A 176 REMARK 465 ILE A 177 REMARK 465 SER A 178 REMARK 465 PRO A 179 REMARK 465 GLU A 180 REMARK 465 ILE A 181 REMARK 465 ALA A 182 REMARK 465 THR A 183 REMARK 465 ARG A 184 REMARK 465 SER A 185 REMARK 465 ALA A 186 REMARK 465 HIS A 187 REMARK 465 GLY A 188 REMARK 465 LEU A 189 REMARK 465 ASN A 217 REMARK 465 THR A 218 REMARK 465 LEU A 219 REMARK 465 ASN A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 266 REMARK 465 ASN A 267 REMARK 465 SER A 268 REMARK 465 SER A 269 REMARK 465 THR A 270 REMARK 465 LYS A 271 REMARK 465 SER A 272 REMARK 465 LYS A 273 REMARK 465 ASP A 274 REMARK 465 GLU A 275 REMARK 465 GLY A 276 REMARK 465 MET B 162 REMARK 465 PRO B 163 REMARK 465 HIS B 164 REMARK 465 GLU B 165 REMARK 465 LYS B 166 REMARK 465 HIS B 167 REMARK 465 TYR B 168 REMARK 465 THR B 169 REMARK 465 LEU B 170 REMARK 465 CYS B 171 REMARK 465 GLY B 172 REMARK 465 THR B 173 REMARK 465 PRO B 174 REMARK 465 ASN B 175 REMARK 465 TYR B 176 REMARK 465 ILE B 177 REMARK 465 SER B 178 REMARK 465 PRO B 179 REMARK 465 GLU B 180 REMARK 465 ILE B 181 REMARK 465 ALA B 182 REMARK 465 THR B 183 REMARK 465 ARG B 184 REMARK 465 SER B 185 REMARK 465 ALA B 186 REMARK 465 HIS B 187 REMARK 465 GLY B 188 REMARK 465 ASP B 211 REMARK 465 THR B 212 REMARK 465 ASP B 213 REMARK 465 THR B 214 REMARK 465 VAL B 215 REMARK 465 LYS B 216 REMARK 465 ARG B 266 REMARK 465 ASN B 267 REMARK 465 SER B 268 REMARK 465 SER B 269 REMARK 465 THR B 270 REMARK 465 LYS B 271 REMARK 465 SER B 272 REMARK 465 LYS B 273 REMARK 465 ASP B 274 REMARK 465 GLU B 275 REMARK 465 GLY B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 SER A 191 OG REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 VAL A 222 CG1 CG2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 248 CG OD1 ND2 REMARK 470 LYS B 12 CD CE NZ REMARK 470 LYS B 19 CE NZ REMARK 470 LYS B 61 CD CE NZ REMARK 470 LYS B 101 CD CE NZ REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 470 ARG B 145 CD NE CZ NH1 NH2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 43 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 80 -161.89 -120.57 REMARK 500 ASP A 135 100.54 -13.51 REMARK 500 ASP A 153 91.45 62.14 REMARK 500 SER A 191 12.19 -60.66 REMARK 500 PHE B 22 21.83 -140.98 REMARK 500 ASP B 80 -163.37 -119.01 REMARK 500 ASP B 135 132.66 -20.43 REMARK 500 ASP B 153 97.48 62.64 REMARK 500 ASN B 220 -9.28 59.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-8389A RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TARGET ID NYSGXRC-8389A PROVIDED BY AUTHORS REMARK 999 DOES NOT EXIST IN THE TARGET DATABASE. DBREF 3COK A 1 274 UNP O00444 PLK4_HUMAN 2 275 DBREF 3COK B 1 274 UNP O00444 PLK4_HUMAN 2 275 SEQADV 3COK SER A -1 UNP O00444 EXPRESSION TAG SEQADV 3COK LEU A 0 UNP O00444 EXPRESSION TAG SEQADV 3COK GLU A 275 UNP O00444 EXPRESSION TAG SEQADV 3COK GLY A 276 UNP O00444 EXPRESSION TAG SEQADV 3COK SER B -1 UNP O00444 EXPRESSION TAG SEQADV 3COK LEU B 0 UNP O00444 EXPRESSION TAG SEQADV 3COK GLU B 275 UNP O00444 EXPRESSION TAG SEQADV 3COK GLY B 276 UNP O00444 EXPRESSION TAG SEQRES 1 A 278 SER LEU ALA THR CYS ILE GLY GLU LYS ILE GLU ASP PHE SEQRES 2 A 278 LYS VAL GLY ASN LEU LEU GLY LYS GLY SER PHE ALA GLY SEQRES 3 A 278 VAL TYR ARG ALA GLU SER ILE HIS THR GLY LEU GLU VAL SEQRES 4 A 278 ALA ILE LYS MET ILE ASP LYS LYS ALA MET TYR LYS ALA SEQRES 5 A 278 GLY MET VAL GLN ARG VAL GLN ASN GLU VAL LYS ILE HIS SEQRES 6 A 278 CYS GLN LEU LYS HIS PRO SER ILE LEU GLU LEU TYR ASN SEQRES 7 A 278 TYR PHE GLU ASP SER ASN TYR VAL TYR LEU VAL LEU GLU SEQRES 8 A 278 MET CYS HIS ASN GLY GLU MET ASN ARG TYR LEU LYS ASN SEQRES 9 A 278 ARG VAL LYS PRO PHE SER GLU ASN GLU ALA ARG HIS PHE SEQRES 10 A 278 MET HIS GLN ILE ILE THR GLY MET LEU TYR LEU HIS SER SEQRES 11 A 278 HIS GLY ILE LEU HIS ARG ASP LEU THR LEU SER ASN LEU SEQRES 12 A 278 LEU LEU THR ARG ASN MET ASN ILE LYS ILE ALA ASP PHE SEQRES 13 A 278 GLY LEU ALA THR GLN LEU LYS MET PRO HIS GLU LYS HIS SEQRES 14 A 278 TYR THR LEU CYS GLY THR PRO ASN TYR ILE SER PRO GLU SEQRES 15 A 278 ILE ALA THR ARG SER ALA HIS GLY LEU GLU SER ASP VAL SEQRES 16 A 278 TRP SER LEU GLY CYS MET PHE TYR THR LEU LEU ILE GLY SEQRES 17 A 278 ARG PRO PRO PHE ASP THR ASP THR VAL LYS ASN THR LEU SEQRES 18 A 278 ASN LYS VAL VAL LEU ALA ASP TYR GLU MET PRO SER PHE SEQRES 19 A 278 LEU SER ILE GLU ALA LYS ASP LEU ILE HIS GLN LEU LEU SEQRES 20 A 278 ARG ARG ASN PRO ALA ASP ARG LEU SER LEU SER SER VAL SEQRES 21 A 278 LEU ASP HIS PRO PHE MET SER ARG ASN SER SER THR LYS SEQRES 22 A 278 SER LYS ASP GLU GLY SEQRES 1 B 278 SER LEU ALA THR CYS ILE GLY GLU LYS ILE GLU ASP PHE SEQRES 2 B 278 LYS VAL GLY ASN LEU LEU GLY LYS GLY SER PHE ALA GLY SEQRES 3 B 278 VAL TYR ARG ALA GLU SER ILE HIS THR GLY LEU GLU VAL SEQRES 4 B 278 ALA ILE LYS MET ILE ASP LYS LYS ALA MET TYR LYS ALA SEQRES 5 B 278 GLY MET VAL GLN ARG VAL GLN ASN GLU VAL LYS ILE HIS SEQRES 6 B 278 CYS GLN LEU LYS HIS PRO SER ILE LEU GLU LEU TYR ASN SEQRES 7 B 278 TYR PHE GLU ASP SER ASN TYR VAL TYR LEU VAL LEU GLU SEQRES 8 B 278 MET CYS HIS ASN GLY GLU MET ASN ARG TYR LEU LYS ASN SEQRES 9 B 278 ARG VAL LYS PRO PHE SER GLU ASN GLU ALA ARG HIS PHE SEQRES 10 B 278 MET HIS GLN ILE ILE THR GLY MET LEU TYR LEU HIS SER SEQRES 11 B 278 HIS GLY ILE LEU HIS ARG ASP LEU THR LEU SER ASN LEU SEQRES 12 B 278 LEU LEU THR ARG ASN MET ASN ILE LYS ILE ALA ASP PHE SEQRES 13 B 278 GLY LEU ALA THR GLN LEU LYS MET PRO HIS GLU LYS HIS SEQRES 14 B 278 TYR THR LEU CYS GLY THR PRO ASN TYR ILE SER PRO GLU SEQRES 15 B 278 ILE ALA THR ARG SER ALA HIS GLY LEU GLU SER ASP VAL SEQRES 16 B 278 TRP SER LEU GLY CYS MET PHE TYR THR LEU LEU ILE GLY SEQRES 17 B 278 ARG PRO PRO PHE ASP THR ASP THR VAL LYS ASN THR LEU SEQRES 18 B 278 ASN LYS VAL VAL LEU ALA ASP TYR GLU MET PRO SER PHE SEQRES 19 B 278 LEU SER ILE GLU ALA LYS ASP LEU ILE HIS GLN LEU LEU SEQRES 20 B 278 ARG ARG ASN PRO ALA ASP ARG LEU SER LEU SER SER VAL SEQRES 21 B 278 LEU ASP HIS PRO PHE MET SER ARG ASN SER SER THR LYS SEQRES 22 B 278 SER LYS ASP GLU GLY HET SO4 A 277 5 HET SO4 A 278 5 HET ANP A 301 27 HET SO4 B 302 5 HET SO4 B 303 5 HET ANP B 301 31 HETNAM SO4 SULFATE ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 9 HOH *91(H2 O) HELIX 1 1 SER A -1 GLY A 5 1 7 HELIX 2 2 LYS A 7 GLU A 9 5 3 HELIX 3 3 LYS A 44 ALA A 50 1 7 HELIX 4 4 MET A 52 CYS A 64 1 13 HELIX 5 5 MET A 96 ASN A 102 1 7 HELIX 6 6 SER A 108 HIS A 129 1 22 HELIX 7 7 THR A 137 SER A 139 5 3 HELIX 8 8 SER A 191 GLY A 206 1 16 HELIX 9 9 SER A 234 LEU A 245 1 12 HELIX 10 10 ASN A 248 ARG A 252 5 5 HELIX 11 11 SER A 254 LEU A 259 1 6 HELIX 12 12 SER B -1 GLY B 5 1 7 HELIX 13 13 LYS B 7 GLU B 9 5 3 HELIX 14 14 LYS B 44 ALA B 50 1 7 HELIX 15 15 MET B 52 CYS B 64 1 13 HELIX 16 16 MET B 96 ASN B 102 1 7 HELIX 17 17 SER B 108 HIS B 129 1 22 HELIX 18 18 THR B 137 SER B 139 5 3 HELIX 19 19 LEU B 189 GLY B 206 1 18 HELIX 20 20 SER B 234 LEU B 245 1 12 HELIX 21 21 ASN B 248 ARG B 252 5 5 HELIX 22 22 SER B 254 LEU B 259 1 6 SHEET 1 A 5 PHE A 11 LYS A 19 0 SHEET 2 A 5 ALA A 23 SER A 30 -1 O VAL A 25 N LEU A 17 SHEET 3 A 5 GLU A 36 ASP A 43 -1 O ILE A 39 N TYR A 26 SHEET 4 A 5 TYR A 83 GLU A 89 -1 O VAL A 84 N ILE A 42 SHEET 5 A 5 LEU A 74 GLU A 79 -1 N PHE A 78 O TYR A 85 SHEET 1 B 3 GLY A 94 GLU A 95 0 SHEET 2 B 3 LEU A 141 LEU A 143 -1 O LEU A 143 N GLY A 94 SHEET 3 B 3 ILE A 149 ILE A 151 -1 O LYS A 150 N LEU A 142 SHEET 1 C 2 ILE A 131 LEU A 132 0 SHEET 2 C 2 THR A 158 GLN A 159 -1 O THR A 158 N LEU A 132 SHEET 1 D 5 PHE B 11 LYS B 19 0 SHEET 2 D 5 ALA B 23 SER B 30 -1 O ARG B 27 N GLY B 14 SHEET 3 D 5 GLU B 36 ASP B 43 -1 O MET B 41 N GLY B 24 SHEET 4 D 5 TYR B 83 LEU B 88 -1 O LEU B 88 N ALA B 38 SHEET 5 D 5 LEU B 74 GLU B 79 -1 N PHE B 78 O TYR B 85 SHEET 1 E 3 GLY B 94 GLU B 95 0 SHEET 2 E 3 LEU B 141 LEU B 143 -1 O LEU B 143 N GLY B 94 SHEET 3 E 3 ILE B 149 ILE B 151 -1 O LYS B 150 N LEU B 142 SHEET 1 F 2 ILE B 131 LEU B 132 0 SHEET 2 F 2 THR B 158 GLN B 159 -1 O THR B 158 N LEU B 132 SITE 1 AC1 6 SER A -1 GLU B 89 THR B 144 ASN B 146 SITE 2 AC1 6 ASN B 148 LYS B 150 SITE 1 AC2 4 THR A 144 ASN A 146 ASN A 148 SER B -1 SITE 1 AC3 3 ARG A 246 ARG A 247 LYS B 49 SITE 1 AC4 3 LYS A 49 ARG B 246 ARG B 247 SITE 1 AC5 10 GLY A 18 LYS A 19 GLY A 20 SER A 21 SITE 2 AC5 10 ALA A 38 LYS A 40 GLU A 89 CYS A 91 SITE 3 AC5 10 ARG A 98 LEU A 142 SITE 1 AC6 9 GLN A 243 LYS B 19 GLY B 20 SER B 21 SITE 2 AC6 9 LYS B 40 LEU B 72 GLU B 89 CYS B 91 SITE 3 AC6 9 ARG B 98 CRYST1 84.516 102.151 63.058 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015858 0.00000