HEADER LIGASE 29-MAR-08 3COV TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE TITLE 2 SYNTHETASE AT 1.5 ANG RESOLUTION- APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING COMPND 5 ENZYME; COMPND 6 EC: 6.3.2.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 GENE: PANC; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS MYCOBACTERIUM TUBERCULOSIS, PANTOTHENATE BIOSYNTHESIS, ENZYMES, KEYWDS 2 LIGASE, DRUG DESIGN, ATP-BINDING, MAGNESIUM, METAL-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.CIULLI,D.Y.CHIRGADZE,T.L.BLUNDELL,C.ABELL REVDAT 7 30-AUG-23 3COV 1 REMARK REVDAT 6 20-OCT-21 3COV 1 REMARK SEQADV REVDAT 5 13-JUL-11 3COV 1 VERSN REVDAT 4 24-FEB-09 3COV 1 VERSN REVDAT 3 18-NOV-08 3COV 1 JRNL REVDAT 2 11-NOV-08 3COV 1 JRNL REVDAT 1 07-OCT-08 3COV 0 JRNL AUTH A.CIULLI,D.E.SCOTT,M.ANDO,F.REYES,S.A.SALDANHA,K.L.TUCK, JRNL AUTH 2 D.Y.CHIRGADZE,T.L.BLUNDELL,C.ABELL JRNL TITL INHIBITION OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE JRNL TITL 2 SYNTHETASE BY ANALOGUES OF THE REACTION INTERMEDIATE. JRNL REF CHEMBIOCHEM V. 9 2606 2008 JRNL REFN ISSN 1439-4227 JRNL PMID 18821554 JRNL DOI 10.1002/CBIC.200800437 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 82138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 601 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.174 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4319 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5893 ; 1.395 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 9.010 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;37.024 ;22.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;12.985 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;16.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3267 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2024 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3028 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 429 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2888 ; 1.984 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4544 ; 2.753 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 3.010 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1346 ; 4.508 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3COV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : 0.34100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1MOP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-14% PEG3000, 100-150 MM LI2SO4, 100 REMARK 280 MM IMIDAZOLE, 2-4% V/V ETHANOL, 5-10% V/V GLYCEROL AND 20 MM REMARK 280 MGCL2., PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.46000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONTAINED IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 289 REMARK 465 PHE A 290 REMARK 465 ALA A 291 REMARK 465 GLY A 292 REMARK 465 THR A 293 REMARK 465 ASP A 294 REMARK 465 ARG A 295 REMARK 465 PRO A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 TYR A 299 REMARK 465 ARG A 300 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 PHE B 73 REMARK 465 GLY B 74 REMARK 465 ALA B 75 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 ASP B 78 REMARK 465 LEU B 79 REMARK 465 ASP B 80 REMARK 465 ALA B 81 REMARK 465 TYR B 82 REMARK 465 THR B 289 REMARK 465 PHE B 290 REMARK 465 ALA B 291 REMARK 465 GLY B 292 REMARK 465 THR B 293 REMARK 465 ASP B 294 REMARK 465 ARG B 295 REMARK 465 PRO B 296 REMARK 465 ASP B 297 REMARK 465 GLY B 298 REMARK 465 TYR B 299 REMARK 465 ARG B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 248 O HOH B 1039 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 75 158.16 -46.10 REMARK 500 ARG A 115 -97.48 -123.46 REMARK 500 LEU A 127 -116.58 54.94 REMARK 500 ASN A 263 -122.19 -108.95 REMARK 500 ARG B 115 -95.37 -139.23 REMARK 500 LEU B 127 -109.31 54.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 713 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MOP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE FROM M. TUBERCULOSIS REMARK 900 RELATED ID: 1N2E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE FROM M. TUBERCULOSIS REMARK 900 IN COMPLEX WITH AMPCPP AND PANTOATE REMARK 900 RELATED ID: 1N2H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE FROM M. TUBERCULOSIS REMARK 900 IN COMPLEX WITH A REACTION INTERMEDIATE, PANTOYL ADENYLATE REMARK 900 RELATED ID: 2A7X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE COMPLEXED WITH AMP REMARK 900 RELATED ID: 2A84 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE COMPLEXED WITH ATP REMARK 900 RELATED ID: 2A86 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE COMPLEXED WITH AMP REMARK 900 AND BETA-ALANINE REMARK 900 RELATED ID: 3COW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE REMARK 900 SYNTHETASE AT 1.8 ANG RESOLUTION - IN COMPLEX WITH SULPHONAMIDE REMARK 900 INHIBITOR 2 REMARK 900 RELATED ID: 3COY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE REMARK 900 SYNTHETASE AT 2.05 ANG RESOLUTION - IN COMPLEX WITH SULPHONAMIDE REMARK 900 INHIBITOR 3 REMARK 900 RELATED ID: 3COZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE REMARK 900 SYNTHETASE AT 2.0 ANG RESOLUTION - IN COMPLEX WITH SULPHONAMIDE REMARK 900 INHIBITOR 4 DBREF 3COV A 1 300 UNP P0A5R0 PANC_MYCTU 1 300 DBREF 3COV B 1 300 UNP P0A5R0 PANC_MYCTU 1 300 SEQADV 3COV ALA A 0 UNP P0A5R0 EXPRESSION TAG SEQADV 3COV ALA A 2 UNP P0A5R0 THR 2 ENGINEERED MUTATION SEQADV 3COV GLY A 77 UNP P0A5R0 GLU 77 ENGINEERED MUTATION SEQADV 3COV ALA B 0 UNP P0A5R0 EXPRESSION TAG SEQADV 3COV ALA B 2 UNP P0A5R0 THR 2 ENGINEERED MUTATION SEQADV 3COV GLY B 77 UNP P0A5R0 GLU 77 ENGINEERED MUTATION SEQRES 1 A 301 ALA MET ALA ILE PRO ALA PHE HIS PRO GLY GLU LEU ASN SEQRES 2 A 301 VAL TYR SER ALA PRO GLY ASP VAL ALA ASP VAL SER ARG SEQRES 3 A 301 ALA LEU ARG LEU THR GLY ARG ARG VAL MET LEU VAL PRO SEQRES 4 A 301 THR MET GLY ALA LEU HIS GLU GLY HIS LEU ALA LEU VAL SEQRES 5 A 301 ARG ALA ALA LYS ARG VAL PRO GLY SER VAL VAL VAL VAL SEQRES 6 A 301 SER ILE PHE VAL ASN PRO MET GLN PHE GLY ALA GLY GLY SEQRES 7 A 301 ASP LEU ASP ALA TYR PRO ARG THR PRO ASP ASP ASP LEU SEQRES 8 A 301 ALA GLN LEU ARG ALA GLU GLY VAL GLU ILE ALA PHE THR SEQRES 9 A 301 PRO THR THR ALA ALA MET TYR PRO ASP GLY LEU ARG THR SEQRES 10 A 301 THR VAL GLN PRO GLY PRO LEU ALA ALA GLU LEU GLU GLY SEQRES 11 A 301 GLY PRO ARG PRO THR HIS PHE ALA GLY VAL LEU THR VAL SEQRES 12 A 301 VAL LEU LYS LEU LEU GLN ILE VAL ARG PRO ASP ARG VAL SEQRES 13 A 301 PHE PHE GLY GLU LYS ASP TYR GLN GLN LEU VAL LEU ILE SEQRES 14 A 301 ARG GLN LEU VAL ALA ASP PHE ASN LEU ASP VAL ALA VAL SEQRES 15 A 301 VAL GLY VAL PRO THR VAL ARG GLU ALA ASP GLY LEU ALA SEQRES 16 A 301 MET SER SER ARG ASN ARG TYR LEU ASP PRO ALA GLN ARG SEQRES 17 A 301 ALA ALA ALA VAL ALA LEU SER ALA ALA LEU THR ALA ALA SEQRES 18 A 301 ALA HIS ALA ALA THR ALA GLY ALA GLN ALA ALA LEU ASP SEQRES 19 A 301 ALA ALA ARG ALA VAL LEU ASP ALA ALA PRO GLY VAL ALA SEQRES 20 A 301 VAL ASP TYR LEU GLU LEU ARG ASP ILE GLY LEU GLY PRO SEQRES 21 A 301 MET PRO LEU ASN GLY SER GLY ARG LEU LEU VAL ALA ALA SEQRES 22 A 301 ARG LEU GLY THR THR ARG LEU LEU ASP ASN ILE ALA ILE SEQRES 23 A 301 GLU ILE GLY THR PHE ALA GLY THR ASP ARG PRO ASP GLY SEQRES 24 A 301 TYR ARG SEQRES 1 B 301 ALA MET ALA ILE PRO ALA PHE HIS PRO GLY GLU LEU ASN SEQRES 2 B 301 VAL TYR SER ALA PRO GLY ASP VAL ALA ASP VAL SER ARG SEQRES 3 B 301 ALA LEU ARG LEU THR GLY ARG ARG VAL MET LEU VAL PRO SEQRES 4 B 301 THR MET GLY ALA LEU HIS GLU GLY HIS LEU ALA LEU VAL SEQRES 5 B 301 ARG ALA ALA LYS ARG VAL PRO GLY SER VAL VAL VAL VAL SEQRES 6 B 301 SER ILE PHE VAL ASN PRO MET GLN PHE GLY ALA GLY GLY SEQRES 7 B 301 ASP LEU ASP ALA TYR PRO ARG THR PRO ASP ASP ASP LEU SEQRES 8 B 301 ALA GLN LEU ARG ALA GLU GLY VAL GLU ILE ALA PHE THR SEQRES 9 B 301 PRO THR THR ALA ALA MET TYR PRO ASP GLY LEU ARG THR SEQRES 10 B 301 THR VAL GLN PRO GLY PRO LEU ALA ALA GLU LEU GLU GLY SEQRES 11 B 301 GLY PRO ARG PRO THR HIS PHE ALA GLY VAL LEU THR VAL SEQRES 12 B 301 VAL LEU LYS LEU LEU GLN ILE VAL ARG PRO ASP ARG VAL SEQRES 13 B 301 PHE PHE GLY GLU LYS ASP TYR GLN GLN LEU VAL LEU ILE SEQRES 14 B 301 ARG GLN LEU VAL ALA ASP PHE ASN LEU ASP VAL ALA VAL SEQRES 15 B 301 VAL GLY VAL PRO THR VAL ARG GLU ALA ASP GLY LEU ALA SEQRES 16 B 301 MET SER SER ARG ASN ARG TYR LEU ASP PRO ALA GLN ARG SEQRES 17 B 301 ALA ALA ALA VAL ALA LEU SER ALA ALA LEU THR ALA ALA SEQRES 18 B 301 ALA HIS ALA ALA THR ALA GLY ALA GLN ALA ALA LEU ASP SEQRES 19 B 301 ALA ALA ARG ALA VAL LEU ASP ALA ALA PRO GLY VAL ALA SEQRES 20 B 301 VAL ASP TYR LEU GLU LEU ARG ASP ILE GLY LEU GLY PRO SEQRES 21 B 301 MET PRO LEU ASN GLY SER GLY ARG LEU LEU VAL ALA ALA SEQRES 22 B 301 ARG LEU GLY THR THR ARG LEU LEU ASP ASN ILE ALA ILE SEQRES 23 B 301 GLU ILE GLY THR PHE ALA GLY THR ASP ARG PRO ASP GLY SEQRES 24 B 301 TYR ARG HET SO4 A 701 5 HET SO4 A 704 5 HET GOL A 705 6 HET GOL A 707 6 HET GOL A 708 6 HET EOH A 709 3 HET EOH A 711 3 HET EOH A 712 3 HET EOH A 713 3 HET SO4 B 702 5 HET SO4 B 703 5 HET GOL B 706 6 HET EOH B 710 3 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EOH ETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 8 EOH 5(C2 H6 O) FORMUL 16 HOH *601(H2 O) HELIX 1 1 ALA A 16 THR A 30 1 15 HELIX 2 2 HIS A 44 ARG A 56 1 13 HELIX 3 3 ASN A 69 PHE A 73 5 5 HELIX 4 4 GLY A 77 TYR A 82 1 6 HELIX 5 5 THR A 85 GLU A 96 1 12 HELIX 6 6 THR A 105 TYR A 110 1 6 HELIX 7 7 GLY A 121 GLY A 130 5 10 HELIX 8 8 THR A 134 ARG A 151 1 18 HELIX 9 9 ASP A 161 PHE A 175 1 15 HELIX 10 10 ARG A 198 LEU A 202 5 5 HELIX 11 11 ASP A 203 ALA A 210 1 8 HELIX 12 12 VAL A 211 ALA A 224 1 14 HELIX 13 13 GLY A 227 ALA A 241 1 15 HELIX 14 14 ALA B 16 THR B 30 1 15 HELIX 15 15 HIS B 44 ARG B 56 1 13 HELIX 16 16 THR B 85 GLU B 96 1 12 HELIX 17 17 THR B 105 TYR B 110 1 6 HELIX 18 18 GLY B 121 GLY B 130 5 10 HELIX 19 19 THR B 134 ARG B 151 1 18 HELIX 20 20 ASP B 161 PHE B 175 1 15 HELIX 21 21 SER B 196 LEU B 202 5 7 HELIX 22 22 ASP B 203 VAL B 211 1 9 HELIX 23 23 VAL B 211 ALA B 224 1 14 HELIX 24 24 GLY B 227 ALA B 241 1 15 SHEET 1 A 6 ASN A 12 TYR A 14 0 SHEET 2 A 6 ILE A 100 PHE A 102 1 O ALA A 101 N ASN A 12 SHEET 3 A 6 SER A 60 ILE A 66 1 N ILE A 66 O PHE A 102 SHEET 4 A 6 ARG A 33 THR A 39 1 N MET A 35 O VAL A 63 SHEET 5 A 6 ARG A 154 GLY A 158 1 O ARG A 154 N LEU A 36 SHEET 6 A 6 ALA A 180 VAL A 184 1 O VAL A 182 N VAL A 155 SHEET 1 B 2 THR A 117 GLN A 119 0 SHEET 2 B 2 THR B 117 GLN B 119 -1 O THR B 117 N GLN A 119 SHEET 1 C 3 ALA A 246 ASP A 254 0 SHEET 2 C 3 SER A 265 LEU A 274 -1 O LEU A 269 N GLU A 251 SHEET 3 C 3 THR A 277 GLU A 286 -1 O LEU A 279 N ALA A 272 SHEET 1 D 6 ASN B 12 TYR B 14 0 SHEET 2 D 6 ILE B 100 PHE B 102 1 O ALA B 101 N TYR B 14 SHEET 3 D 6 SER B 60 ILE B 66 1 N ILE B 66 O PHE B 102 SHEET 4 D 6 ARG B 33 THR B 39 1 N MET B 35 O VAL B 63 SHEET 5 D 6 ARG B 154 GLY B 158 1 O ARG B 154 N LEU B 36 SHEET 6 D 6 ALA B 180 VAL B 184 1 O VAL B 182 N VAL B 155 SHEET 1 E 3 ALA B 246 ASP B 254 0 SHEET 2 E 3 GLY B 264 LEU B 274 -1 O ARG B 267 N ARG B 253 SHEET 3 E 3 THR B 277 ILE B 287 -1 O THR B 277 N LEU B 274 SITE 1 AC1 5 HIS A 44 HIS A 47 LYS A 160 SER A 196 SITE 2 AC1 5 SER A 197 SITE 1 AC2 4 HIS B 44 LYS B 160 SER B 196 SER B 197 SITE 1 AC3 2 PRO B 58 ARG B 154 SITE 1 AC4 3 ARG A 56 PRO A 58 ARG A 154 SITE 1 AC5 2 GLN A 72 GLN A 164 SITE 1 AC6 3 PRO B 38 GLN B 72 GLN B 164 SITE 1 AC7 9 MET A 109 TYR A 110 PRO A 111 ASP A 112 SITE 2 AC7 9 GLY A 113 ARG A 115 THR A 116 LYS A 145 SITE 3 AC7 9 ASP B 174 SITE 1 AC8 2 PRO A 111 ASP A 112 SITE 1 AC9 5 LEU A 114 ARG A 115 THR A 117 GLN B 119 SITE 2 AC9 5 PRO B 120 SITE 1 BC1 3 SER B 24 ARG B 25 ARG B 151 SITE 1 BC2 3 THR A 218 HIS B 222 THR B 225 SITE 1 BC3 2 ASN A 176 PRO B 17 CRYST1 48.270 70.920 81.870 90.00 99.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020716 0.000000 0.003341 0.00000 SCALE2 0.000000 0.014101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012372 0.00000