HEADER OXIDOREDUCTASE 02-APR-08 3CQ3 TITLE STRUCTURE OF THE DTDP-4-KETO-L-RHAMNOSE REDUCTASE RELATED PROTEIN TITLE 2 (OTHER FORM) FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN TTHB138; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: DTDP-4-KETO-L-RHAMNOSE REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS THERMUS THERMOPHILUS, DTDP-4-KETO-L-RHAMNOSE REDUCTASE, KEYWDS 2 OXIDOREDUCTASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR J.JEYAKANTHAN,S.P.KANAUJIA,K.SEKAR,S.SATOH,Y.KITAMURA,S.YOKOYAMA, AUTHOR 2 S.KURAMITSU,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 15-NOV-23 3CQ3 1 REMARK REVDAT 3 01-NOV-23 3CQ3 1 REMARK LINK REVDAT 2 13-JUL-11 3CQ3 1 VERSN REVDAT 1 07-APR-09 3CQ3 0 JRNL AUTH J.JEYAKANTHAN,S.P.KANAUJIA,K.SEKAR,S.SATOH,Y.KITAMURA, JRNL AUTH 2 S.YOKOYAMA,S.KURMAMITSU JRNL TITL STRUCTURE OF THE DTDP-4-KETO-L-RHAMNOSE REDUCTASE RELATED JRNL TITL 2 PROTEIN (OTHER FORM) FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 694419.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 82194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4000 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9034 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 424 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.73000 REMARK 3 B22 (A**2) : -4.73000 REMARK 3 B33 (A**2) : 9.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 65.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGAND.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER_PROTIN.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FILE CONTAINS FRIEDEL PAIRS REMARK 4 REMARK 4 3CQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RH COATED BENT-CYRINDRICAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : 0.08900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2CU6 REMARK 200 REMARK 200 REMARK: THE FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG400, 0.1M NA ACETATE, 0.1M REMARK 280 MAGNESIUM CHLORIDE , PH4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 87.56100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.54750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 87.56100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 49.54750 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 87.56100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 49.54750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 87.56100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 49.54750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.56100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.54750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 87.56100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 49.54750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 87.56100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 49.54750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 87.56100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 87.56100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.54750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 103 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 103 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ALA C 3 REMARK 465 ARG C 4 REMARK 465 GLY C 103 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ALA D 3 REMARK 465 ARG D 4 REMARK 465 GLY D 103 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 ALA E 3 REMARK 465 ARG E 4 REMARK 465 GLY E 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 40 136.54 -38.63 REMARK 500 PRO B 40 136.51 -39.39 REMARK 500 ARG B 97 24.48 -79.85 REMARK 500 PRO C 40 140.03 -36.57 REMARK 500 PRO D 40 138.86 -35.83 REMARK 500 PRO E 40 139.35 -36.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 E 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CU6 RELATED DB: PDB REMARK 900 RELATED ID: 3CQ1 RELATED DB: PDB REMARK 900 OTHER FORM OF THIS PROTEIN REMARK 900 RELATED ID: 3CQ2 RELATED DB: PDB REMARK 900 OTHER FORM OF THIS PROTEIN REMARK 900 RELATED ID: TTK003001362.2 RELATED DB: TARGETDB DBREF 3CQ3 A 1 103 UNP Q53W28 Q53W28_THET8 1 103 DBREF 3CQ3 B 1 103 UNP Q53W28 Q53W28_THET8 1 103 DBREF 3CQ3 C 1 103 UNP Q53W28 Q53W28_THET8 1 103 DBREF 3CQ3 D 1 103 UNP Q53W28 Q53W28_THET8 1 103 DBREF 3CQ3 E 1 103 UNP Q53W28 Q53W28_THET8 1 103 SEQRES 1 A 103 MET THR ALA ARG ASN PRO LEU GLU ALA GLN ALA TRP ALA SEQRES 2 A 103 LEU LEU GLU ALA VAL TYR ASP PRO GLU LEU GLY LEU ASP SEQRES 3 A 103 VAL VAL ASN LEU GLY LEU ILE TYR ASP LEU VAL VAL GLU SEQRES 4 A 103 PRO PRO ARG ALA TYR VAL ARG MSE THR LEU THR THR PRO SEQRES 5 A 103 GLY CYS PRO LEU HIS ASP SER LEU GLY GLU ALA VAL ARG SEQRES 6 A 103 GLN ALA LEU SER ARG LEU PRO GLY VAL GLU GLU VAL GLU SEQRES 7 A 103 VAL GLU VAL THR PHE GLU PRO PRO TRP THR LEU ALA ARG SEQRES 8 A 103 LEU SER GLU LYS ALA ARG ARG LEU LEU GLY TRP GLY SEQRES 1 B 103 MET THR ALA ARG ASN PRO LEU GLU ALA GLN ALA TRP ALA SEQRES 2 B 103 LEU LEU GLU ALA VAL TYR ASP PRO GLU LEU GLY LEU ASP SEQRES 3 B 103 VAL VAL ASN LEU GLY LEU ILE TYR ASP LEU VAL VAL GLU SEQRES 4 B 103 PRO PRO ARG ALA TYR VAL ARG MSE THR LEU THR THR PRO SEQRES 5 B 103 GLY CYS PRO LEU HIS ASP SER LEU GLY GLU ALA VAL ARG SEQRES 6 B 103 GLN ALA LEU SER ARG LEU PRO GLY VAL GLU GLU VAL GLU SEQRES 7 B 103 VAL GLU VAL THR PHE GLU PRO PRO TRP THR LEU ALA ARG SEQRES 8 B 103 LEU SER GLU LYS ALA ARG ARG LEU LEU GLY TRP GLY SEQRES 1 C 103 MET THR ALA ARG ASN PRO LEU GLU ALA GLN ALA TRP ALA SEQRES 2 C 103 LEU LEU GLU ALA VAL TYR ASP PRO GLU LEU GLY LEU ASP SEQRES 3 C 103 VAL VAL ASN LEU GLY LEU ILE TYR ASP LEU VAL VAL GLU SEQRES 4 C 103 PRO PRO ARG ALA TYR VAL ARG MSE THR LEU THR THR PRO SEQRES 5 C 103 GLY CYS PRO LEU HIS ASP SER LEU GLY GLU ALA VAL ARG SEQRES 6 C 103 GLN ALA LEU SER ARG LEU PRO GLY VAL GLU GLU VAL GLU SEQRES 7 C 103 VAL GLU VAL THR PHE GLU PRO PRO TRP THR LEU ALA ARG SEQRES 8 C 103 LEU SER GLU LYS ALA ARG ARG LEU LEU GLY TRP GLY SEQRES 1 D 103 MET THR ALA ARG ASN PRO LEU GLU ALA GLN ALA TRP ALA SEQRES 2 D 103 LEU LEU GLU ALA VAL TYR ASP PRO GLU LEU GLY LEU ASP SEQRES 3 D 103 VAL VAL ASN LEU GLY LEU ILE TYR ASP LEU VAL VAL GLU SEQRES 4 D 103 PRO PRO ARG ALA TYR VAL ARG MSE THR LEU THR THR PRO SEQRES 5 D 103 GLY CYS PRO LEU HIS ASP SER LEU GLY GLU ALA VAL ARG SEQRES 6 D 103 GLN ALA LEU SER ARG LEU PRO GLY VAL GLU GLU VAL GLU SEQRES 7 D 103 VAL GLU VAL THR PHE GLU PRO PRO TRP THR LEU ALA ARG SEQRES 8 D 103 LEU SER GLU LYS ALA ARG ARG LEU LEU GLY TRP GLY SEQRES 1 E 103 MET THR ALA ARG ASN PRO LEU GLU ALA GLN ALA TRP ALA SEQRES 2 E 103 LEU LEU GLU ALA VAL TYR ASP PRO GLU LEU GLY LEU ASP SEQRES 3 E 103 VAL VAL ASN LEU GLY LEU ILE TYR ASP LEU VAL VAL GLU SEQRES 4 E 103 PRO PRO ARG ALA TYR VAL ARG MSE THR LEU THR THR PRO SEQRES 5 E 103 GLY CYS PRO LEU HIS ASP SER LEU GLY GLU ALA VAL ARG SEQRES 6 E 103 GLN ALA LEU SER ARG LEU PRO GLY VAL GLU GLU VAL GLU SEQRES 7 E 103 VAL GLU VAL THR PHE GLU PRO PRO TRP THR LEU ALA ARG SEQRES 8 E 103 LEU SER GLU LYS ALA ARG ARG LEU LEU GLY TRP GLY MODRES 3CQ3 MSE A 47 MET SELENOMETHIONINE MODRES 3CQ3 MSE B 47 MET SELENOMETHIONINE MODRES 3CQ3 MSE C 47 MET SELENOMETHIONINE MODRES 3CQ3 MSE D 47 MET SELENOMETHIONINE MODRES 3CQ3 MSE E 47 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE B 47 8 HET MSE C 47 8 HET MSE D 47 8 HET MSE E 47 8 HET MG A 104 1 HET GOL A 106 6 HET GOL A 107 6 HET P6G A 105 19 HET MG B 104 1 HET GOL B 105 6 HET GOL B 106 6 HET GOL B 107 6 HET MG C 105 1 HET GOL C 106 6 HET GOL C 107 6 HET GOL C 108 6 HET MG D 106 1 HET GOL D 107 6 HET MG E 107 1 HET GOL E 109 6 HET GOL E 110 6 HET PG4 E 108 13 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 6 MG 5(MG 2+) FORMUL 7 GOL 11(C3 H8 O3) FORMUL 9 P6G C12 H26 O7 FORMUL 23 PG4 C8 H18 O5 FORMUL 24 HOH *388(H2 O) HELIX 1 1 ASN A 5 GLU A 16 1 12 HELIX 2 2 ASP A 58 SER A 69 1 12 HELIX 3 3 THR A 88 LEU A 92 5 5 HELIX 4 4 SER A 93 GLY A 101 1 9 HELIX 5 5 ASN B 5 GLU B 16 1 12 HELIX 6 6 ASP B 58 ARG B 70 1 13 HELIX 7 7 THR B 88 LEU B 92 5 5 HELIX 8 8 LYS B 95 LEU B 100 1 6 HELIX 9 9 PRO C 6 GLU C 16 1 11 HELIX 10 10 ASP C 58 ARG C 70 1 13 HELIX 11 11 THR C 88 LEU C 92 5 5 HELIX 12 12 LYS C 95 LEU C 100 1 6 HELIX 13 13 ASN D 5 ALA D 17 1 13 HELIX 14 14 ASP D 58 ARG D 70 1 13 HELIX 15 15 THR D 88 LEU D 92 5 5 HELIX 16 16 LYS D 95 LEU D 100 1 6 HELIX 17 17 ASN E 5 GLU E 16 1 12 HELIX 18 18 VAL E 27 GLY E 31 1 5 HELIX 19 19 ASP E 58 ARG E 70 1 13 HELIX 20 20 THR E 88 LEU E 92 5 5 HELIX 21 21 SER E 93 GLY E 101 1 9 SHEET 1 A 3 ILE A 33 GLU A 39 0 SHEET 2 A 3 ARG A 42 MSE A 47 -1 O TYR A 44 N VAL A 37 SHEET 3 A 3 GLU A 76 VAL A 81 1 O GLU A 80 N VAL A 45 SHEET 1 B 2 TYR B 19 ASP B 20 0 SHEET 2 B 2 LEU B 25 ASP B 26 -1 O LEU B 25 N ASP B 20 SHEET 1 C 3 ILE B 33 GLU B 39 0 SHEET 2 C 3 ARG B 42 MSE B 47 -1 O TYR B 44 N VAL B 37 SHEET 3 C 3 GLU B 76 VAL B 81 1 O GLU B 80 N MSE B 47 SHEET 1 D 3 ILE C 33 GLU C 39 0 SHEET 2 D 3 ARG C 42 MSE C 47 -1 O TYR C 44 N VAL C 37 SHEET 3 D 3 GLU C 76 VAL C 81 1 O GLU C 80 N VAL C 45 SHEET 1 E 2 TYR D 19 ASP D 20 0 SHEET 2 E 2 LEU D 25 ASP D 26 -1 O LEU D 25 N ASP D 20 SHEET 1 F 3 ILE D 33 GLU D 39 0 SHEET 2 F 3 ARG D 42 MSE D 47 -1 O TYR D 44 N VAL D 37 SHEET 3 F 3 GLU D 76 VAL D 81 1 O GLU D 80 N MSE D 47 SHEET 1 G 2 TYR E 19 ASP E 20 0 SHEET 2 G 2 LEU E 25 ASP E 26 -1 O LEU E 25 N ASP E 20 SHEET 1 H 3 ILE E 33 GLU E 39 0 SHEET 2 H 3 ARG E 42 MSE E 47 -1 O TYR E 44 N VAL E 37 SHEET 3 H 3 GLU E 76 VAL E 81 1 O GLU E 78 N ALA E 43 SSBOND 1 CYS A 54 CYS A 54 1555 8555 2.54 SSBOND 2 CYS B 54 CYS C 54 1555 1555 2.04 SSBOND 3 CYS D 54 CYS E 54 1555 1555 2.04 LINK C ARG A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N THR A 48 1555 1555 1.33 LINK C ARG B 46 N MSE B 47 1555 1555 1.32 LINK C MSE B 47 N THR B 48 1555 1555 1.33 LINK C ARG C 46 N MSE C 47 1555 1555 1.33 LINK C MSE C 47 N THR C 48 1555 1555 1.33 LINK C ARG D 46 N MSE D 47 1555 1555 1.33 LINK C MSE D 47 N THR D 48 1555 1555 1.33 LINK C ARG E 46 N MSE E 47 1555 1555 1.32 LINK C MSE E 47 N THR E 48 1555 1555 1.33 CISPEP 1 PRO A 40 PRO A 41 0 0.46 CISPEP 2 GLU A 84 PRO A 85 0 0.10 CISPEP 3 PRO B 40 PRO B 41 0 0.69 CISPEP 4 GLU B 84 PRO B 85 0 0.04 CISPEP 5 ASN C 5 PRO C 6 0 16.88 CISPEP 6 PRO C 40 PRO C 41 0 0.23 CISPEP 7 GLU C 84 PRO C 85 0 -0.07 CISPEP 8 PRO D 40 PRO D 41 0 0.31 CISPEP 9 GLU D 84 PRO D 85 0 -0.12 CISPEP 10 PRO E 40 PRO E 41 0 0.07 CISPEP 11 GLU E 84 PRO E 85 0 -0.06 SITE 1 AC1 3 THR A 88 ARG A 91 HOH A 304 SITE 1 AC2 4 THR B 88 ARG B 91 HOH B 209 ARG E 91 SITE 1 AC3 4 ARG B 91 THR C 88 ARG C 91 HOH C 205 SITE 1 AC4 4 ARG C 91 THR D 88 ARG D 91 PG4 E 108 SITE 1 AC5 4 ARG D 91 THR E 88 ARG E 91 HOH E 577 SITE 1 AC6 11 GLU A 22 GLU A 39 PRO A 41 ARG A 42 SITE 2 AC6 11 TYR A 44 HOH A 322 GLU B 39 PRO B 41 SITE 3 AC6 11 ARG B 42 TYR B 44 GLU C 22 SITE 1 AC7 4 ALA C 90 MG D 106 ALA E 90 HOH E 484 SITE 1 AC8 10 VAL A 27 VAL A 28 GLY A 31 LEU A 32 SITE 2 AC8 10 ILE A 33 LEU A 89 ALA A 90 HOH A 229 SITE 3 AC8 10 HOH A 274 HOH A 477 SITE 1 AC9 8 ARG A 46 THR A 48 LEU A 49 PRO A 52 SITE 2 AC9 8 PHE A 83 PRO A 86 TRP A 87 HOH A 510 SITE 1 BC1 10 VAL B 27 VAL B 28 GLY B 31 LEU B 32 SITE 2 BC1 10 ILE B 33 HOH B 201 HOH B 224 HOH B 500 SITE 3 BC1 10 LEU C 89 ALA C 90 SITE 1 BC2 10 THR B 48 LEU B 49 PRO B 52 PHE B 83 SITE 2 BC2 10 PRO B 86 TRP B 87 HOH B 207 HOH B 310 SITE 3 BC2 10 ARG E 46 HOH E 212 SITE 1 BC3 9 THR B 82 PHE B 83 GLU B 84 PRO C 52 SITE 2 BC3 9 GLY C 53 PHE C 83 HOH C 374 HOH C 375 SITE 3 BC3 9 HOH C 514 SITE 1 BC4 9 VAL C 27 VAL C 28 GLY C 31 ILE C 33 SITE 2 BC4 9 HOH C 303 HOH C 389 HOH C 391 LEU D 89 SITE 3 BC4 9 ALA D 90 SITE 1 BC5 9 ARG B 46 HOH B 361 HOH B 379 THR C 48 SITE 2 BC5 9 LEU C 49 PHE C 83 PRO C 86 TRP C 87 SITE 3 BC5 9 HOH C 513 SITE 1 BC6 8 PRO B 52 GLY B 53 PHE B 83 THR C 82 SITE 2 BC6 8 PHE C 83 GLU C 84 HOH C 369 HOH C 375 SITE 1 BC7 10 VAL D 27 VAL D 28 GLY D 31 LEU D 32 SITE 2 BC7 10 ILE D 33 HOH D 416 LEU E 89 ALA E 90 SITE 3 BC7 10 HOH E 219 HOH E 252 SITE 1 BC8 11 LEU B 89 ALA B 90 VAL E 27 VAL E 28 SITE 2 BC8 11 GLY E 31 LEU E 32 ILE E 33 HOH E 228 SITE 3 BC8 11 HOH E 262 HOH E 381 HOH E 506 SITE 1 BC9 9 ARG D 46 HOH D 222 THR E 48 LEU E 49 SITE 2 BC9 9 PHE E 83 PRO E 86 TRP E 87 HOH E 515 SITE 3 BC9 9 HOH E 516 CRYST1 175.122 175.122 99.095 90.00 90.00 90.00 I 4 2 2 80 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005710 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010091 0.00000