data_3CRF # _entry.id 3CRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CRF pdb_00003crf 10.2210/pdb3crf/pdb RCSB RCSB047122 ? ? WWPDB D_1000047122 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_image_scans 2 3 'Structure model' em_software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' em_3d_fitting_list 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_em_3d_fitting_list.accession_code' 5 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 4 'Structure model' '_em_3d_fitting_list.source_name' 7 4 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CRF _pdbx_database_status.recvd_initial_deposition_date 2008-04-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type EMDB EMD-1494 ;Structural Analysis of the Saf Pilus by Electron Microscopy and Image Processing - 3D reconstruction of the Type A Saf pilus, one of two conformations of the pilus refined ; 'other EM volume' EMDB EMD-1495 ;Structural Analysis of the Saf Pilus by Electron Microscopy and Image Processing - 3D reconstruction of the Type B Saf pilus, one of two conformations of the pilus refined ; 'associated EM volume' PDB 2CO4 'Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide' unspecified PDB 3CRE 'Electron Microscopy model of the Saf Pilus - Type A' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Salih, O.' 1 'Remaut, H.' 2 'Waksman, G.' 3 'Orlova, E.V.' 4 # _citation.id primary _citation.title 'Structural analysis of the Saf pilus by electron microscopy and image processing.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 379 _citation.page_first 174 _citation.page_last 187 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18448124 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.03.056 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salih, O.' 1 ? primary 'Remaut, H.' 2 ? primary 'Waksman, G.' 3 ? primary 'Orlova, E.V.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Outer membrane protein' 12992.533 1 ? ? 'core pilin domain, N-terminal deleted, UNP residues 48-170' ? 2 polymer man 'Outer membrane protein' 15270.004 1 ? ? 'core pilin domain, UNP residues 27-170' ? 3 polymer syn 'Outer membrane protein' 2070.237 1 ? ? 'N-TERMINAL EXTENSION, UNP residues 27-45' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'SAFA PILUS SUBUNIT' 2 'SAFA PILUS SUBUNIT' 3 'SAFA N-TERMINAL EXTENSION' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTE KWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQP ; ;DLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTE KWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQP ; A ? 2 'polypeptide(L)' no no ;GSFLPNSEQQKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKN TGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQP ; ;GSFLPNSEQQKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKN TGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQP ; B ? 3 'polypeptide(L)' no no GSFLPNSEQQKSVDIVFSS GSFLPNSEQQKSVDIVFSS C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 LEU n 1 3 THR n 1 4 VAL n 1 5 SER n 1 6 LEU n 1 7 ILE n 1 8 PRO n 1 9 VAL n 1 10 SER n 1 11 GLY n 1 12 LEU n 1 13 LYS n 1 14 ALA n 1 15 GLY n 1 16 LYS n 1 17 ASN n 1 18 ALA n 1 19 PRO n 1 20 SER n 1 21 ALA n 1 22 LYS n 1 23 ILE n 1 24 ALA n 1 25 LYS n 1 26 LEU n 1 27 VAL n 1 28 VAL n 1 29 ASN n 1 30 SER n 1 31 THR n 1 32 THR n 1 33 LEU n 1 34 LYS n 1 35 GLU n 1 36 PHE n 1 37 GLY n 1 38 VAL n 1 39 ARG n 1 40 GLY n 1 41 ILE n 1 42 SER n 1 43 ASN n 1 44 ASN n 1 45 VAL n 1 46 VAL n 1 47 ASP n 1 48 SER n 1 49 THR n 1 50 GLY n 1 51 THR n 1 52 ALA n 1 53 TRP n 1 54 ARG n 1 55 VAL n 1 56 ALA n 1 57 GLY n 1 58 LYS n 1 59 ASN n 1 60 THR n 1 61 GLY n 1 62 LYS n 1 63 GLU n 1 64 ILE n 1 65 GLY n 1 66 VAL n 1 67 GLY n 1 68 LEU n 1 69 SER n 1 70 SER n 1 71 ASP n 1 72 SER n 1 73 LEU n 1 74 ARG n 1 75 ARG n 1 76 SER n 1 77 ASP n 1 78 SER n 1 79 THR n 1 80 GLU n 1 81 LYS n 1 82 TRP n 1 83 ASN n 1 84 GLY n 1 85 VAL n 1 86 ASN n 1 87 TRP n 1 88 MET n 1 89 THR n 1 90 PHE n 1 91 ASN n 1 92 SER n 1 93 ASN n 1 94 ASP n 1 95 THR n 1 96 LEU n 1 97 ASP n 1 98 ILE n 1 99 VAL n 1 100 LEU n 1 101 THR n 1 102 GLY n 1 103 PRO n 1 104 ALA n 1 105 GLN n 1 106 ASN n 1 107 VAL n 1 108 THR n 1 109 ALA n 1 110 ASP n 1 111 THR n 1 112 TYR n 1 113 PRO n 1 114 ILE n 1 115 THR n 1 116 LEU n 1 117 ASP n 1 118 VAL n 1 119 VAL n 1 120 GLY n 1 121 TYR n 1 122 GLN n 1 123 PRO n 2 1 GLY n 2 2 SER n 2 3 PHE n 2 4 LEU n 2 5 PRO n 2 6 ASN n 2 7 SER n 2 8 GLU n 2 9 GLN n 2 10 GLN n 2 11 LYS n 2 12 SER n 2 13 VAL n 2 14 ASP n 2 15 ILE n 2 16 VAL n 2 17 PHE n 2 18 SER n 2 19 SER n 2 20 PRO n 2 21 GLN n 2 22 ASP n 2 23 LEU n 2 24 THR n 2 25 VAL n 2 26 SER n 2 27 LEU n 2 28 ILE n 2 29 PRO n 2 30 VAL n 2 31 SER n 2 32 GLY n 2 33 LEU n 2 34 LYS n 2 35 ALA n 2 36 GLY n 2 37 LYS n 2 38 ASN n 2 39 ALA n 2 40 PRO n 2 41 SER n 2 42 ALA n 2 43 LYS n 2 44 ILE n 2 45 ALA n 2 46 LYS n 2 47 LEU n 2 48 VAL n 2 49 VAL n 2 50 ASN n 2 51 SER n 2 52 THR n 2 53 THR n 2 54 LEU n 2 55 LYS n 2 56 GLU n 2 57 PHE n 2 58 GLY n 2 59 VAL n 2 60 ARG n 2 61 GLY n 2 62 ILE n 2 63 SER n 2 64 ASN n 2 65 ASN n 2 66 VAL n 2 67 VAL n 2 68 ASP n 2 69 SER n 2 70 THR n 2 71 GLY n 2 72 THR n 2 73 ALA n 2 74 TRP n 2 75 ARG n 2 76 VAL n 2 77 ALA n 2 78 GLY n 2 79 LYS n 2 80 ASN n 2 81 THR n 2 82 GLY n 2 83 LYS n 2 84 GLU n 2 85 ILE n 2 86 GLY n 2 87 VAL n 2 88 GLY n 2 89 LEU n 2 90 SER n 2 91 SER n 2 92 ASP n 2 93 SER n 2 94 LEU n 2 95 ARG n 2 96 ARG n 2 97 SER n 2 98 ASP n 2 99 SER n 2 100 THR n 2 101 GLU n 2 102 LYS n 2 103 TRP n 2 104 ASN n 2 105 GLY n 2 106 VAL n 2 107 ASN n 2 108 TRP n 2 109 MET n 2 110 THR n 2 111 PHE n 2 112 ASN n 2 113 SER n 2 114 ASN n 2 115 ASP n 2 116 THR n 2 117 LEU n 2 118 ASP n 2 119 ILE n 2 120 VAL n 2 121 LEU n 2 122 THR n 2 123 GLY n 2 124 PRO n 2 125 ALA n 2 126 GLN n 2 127 ASN n 2 128 VAL n 2 129 THR n 2 130 ALA n 2 131 ASP n 2 132 THR n 2 133 TYR n 2 134 PRO n 2 135 ILE n 2 136 THR n 2 137 LEU n 2 138 ASP n 2 139 VAL n 2 140 VAL n 2 141 GLY n 2 142 TYR n 2 143 GLN n 2 144 PRO n 3 1 GLY n 3 2 SER n 3 3 PHE n 3 4 LEU n 3 5 PRO n 3 6 ASN n 3 7 SER n 3 8 GLU n 3 9 GLN n 3 10 GLN n 3 11 LYS n 3 12 SER n 3 13 VAL n 3 14 ASP n 3 15 ILE n 3 16 VAL n 3 17 PHE n 3 18 SER n 3 19 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? safA ? LT2 ? ? ? ? 'Salmonella typhimurium' ? ? ? ? ? ? ? ? ? 'Escherichia coli' ? ? ? ? ? ? ? C600 ? ? ? ? ? ? ? Plasmid ? ? ? PTRC99A ? ? 2 1 sample ? ? ? ? ? safA ? LT2 ? ? ? ? 'Salmonella typhimurium' ? ? ? ? ? ? ? ? ? 'Escherichia coli' ? ? ? ? ? ? ? C600 ? ? ? ? ? ? ? Plasmid ? ? ? PTRC99A ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SafANte-N-terminal extension' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 22 22 ASP ASP A . n A 1 2 LEU 2 23 23 LEU LEU A . n A 1 3 THR 3 24 24 THR THR A . n A 1 4 VAL 4 25 25 VAL VAL A . n A 1 5 SER 5 26 26 SER SER A . n A 1 6 LEU 6 27 27 LEU LEU A . n A 1 7 ILE 7 28 28 ILE ILE A . n A 1 8 PRO 8 29 29 PRO PRO A . n A 1 9 VAL 9 30 30 VAL VAL A . n A 1 10 SER 10 31 31 SER SER A . n A 1 11 GLY 11 32 32 GLY GLY A . n A 1 12 LEU 12 33 33 LEU LEU A . n A 1 13 LYS 13 34 34 LYS LYS A . n A 1 14 ALA 14 35 35 ALA ALA A . n A 1 15 GLY 15 36 36 GLY GLY A . n A 1 16 LYS 16 37 37 LYS LYS A . n A 1 17 ASN 17 38 38 ASN ASN A . n A 1 18 ALA 18 39 39 ALA ALA A . n A 1 19 PRO 19 40 40 PRO PRO A . n A 1 20 SER 20 41 41 SER SER A . n A 1 21 ALA 21 42 42 ALA ALA A . n A 1 22 LYS 22 43 43 LYS LYS A . n A 1 23 ILE 23 44 44 ILE ILE A . n A 1 24 ALA 24 45 45 ALA ALA A . n A 1 25 LYS 25 46 46 LYS LYS A . n A 1 26 LEU 26 47 47 LEU LEU A . n A 1 27 VAL 27 48 48 VAL VAL A . n A 1 28 VAL 28 49 49 VAL VAL A . n A 1 29 ASN 29 50 50 ASN ASN A . n A 1 30 SER 30 51 51 SER SER A . n A 1 31 THR 31 52 52 THR THR A . n A 1 32 THR 32 53 53 THR THR A . n A 1 33 LEU 33 54 54 LEU LEU A . n A 1 34 LYS 34 55 55 LYS LYS A . n A 1 35 GLU 35 56 56 GLU GLU A . n A 1 36 PHE 36 57 57 PHE PHE A . n A 1 37 GLY 37 58 58 GLY GLY A . n A 1 38 VAL 38 59 59 VAL VAL A . n A 1 39 ARG 39 60 60 ARG ARG A . n A 1 40 GLY 40 61 61 GLY GLY A . n A 1 41 ILE 41 62 62 ILE ILE A . n A 1 42 SER 42 63 63 SER SER A . n A 1 43 ASN 43 64 64 ASN ASN A . n A 1 44 ASN 44 65 65 ASN ASN A . n A 1 45 VAL 45 66 66 VAL VAL A . n A 1 46 VAL 46 67 67 VAL VAL A . n A 1 47 ASP 47 68 68 ASP ASP A . n A 1 48 SER 48 69 69 SER SER A . n A 1 49 THR 49 70 70 THR THR A . n A 1 50 GLY 50 71 71 GLY GLY A . n A 1 51 THR 51 72 72 THR THR A . n A 1 52 ALA 52 73 73 ALA ALA A . n A 1 53 TRP 53 74 74 TRP TRP A . n A 1 54 ARG 54 75 75 ARG ARG A . n A 1 55 VAL 55 76 76 VAL VAL A . n A 1 56 ALA 56 77 77 ALA ALA A . n A 1 57 GLY 57 78 78 GLY GLY A . n A 1 58 LYS 58 79 79 LYS LYS A . n A 1 59 ASN 59 80 80 ASN ASN A . n A 1 60 THR 60 81 81 THR THR A . n A 1 61 GLY 61 82 82 GLY GLY A . n A 1 62 LYS 62 83 83 LYS LYS A . n A 1 63 GLU 63 84 84 GLU GLU A . n A 1 64 ILE 64 85 85 ILE ILE A . n A 1 65 GLY 65 86 86 GLY GLY A . n A 1 66 VAL 66 87 87 VAL VAL A . n A 1 67 GLY 67 88 88 GLY GLY A . n A 1 68 LEU 68 89 89 LEU LEU A . n A 1 69 SER 69 90 90 SER SER A . n A 1 70 SER 70 91 91 SER SER A . n A 1 71 ASP 71 92 92 ASP ASP A . n A 1 72 SER 72 93 93 SER SER A . n A 1 73 LEU 73 94 94 LEU LEU A . n A 1 74 ARG 74 95 95 ARG ARG A . n A 1 75 ARG 75 96 96 ARG ARG A . n A 1 76 SER 76 97 97 SER SER A . n A 1 77 ASP 77 98 98 ASP ASP A . n A 1 78 SER 78 99 99 SER SER A . n A 1 79 THR 79 100 100 THR THR A . n A 1 80 GLU 80 101 101 GLU GLU A . n A 1 81 LYS 81 102 102 LYS LYS A . n A 1 82 TRP 82 103 103 TRP TRP A . n A 1 83 ASN 83 104 104 ASN ASN A . n A 1 84 GLY 84 105 105 GLY GLY A . n A 1 85 VAL 85 106 106 VAL VAL A . n A 1 86 ASN 86 107 107 ASN ASN A . n A 1 87 TRP 87 108 108 TRP TRP A . n A 1 88 MET 88 109 109 MET MET A . n A 1 89 THR 89 110 110 THR THR A . n A 1 90 PHE 90 111 111 PHE PHE A . n A 1 91 ASN 91 112 112 ASN ASN A . n A 1 92 SER 92 113 113 SER SER A . n A 1 93 ASN 93 114 114 ASN ASN A . n A 1 94 ASP 94 115 115 ASP ASP A . n A 1 95 THR 95 116 116 THR THR A . n A 1 96 LEU 96 117 117 LEU LEU A . n A 1 97 ASP 97 118 118 ASP ASP A . n A 1 98 ILE 98 119 119 ILE ILE A . n A 1 99 VAL 99 120 120 VAL VAL A . n A 1 100 LEU 100 121 121 LEU LEU A . n A 1 101 THR 101 122 122 THR THR A . n A 1 102 GLY 102 123 123 GLY GLY A . n A 1 103 PRO 103 124 124 PRO PRO A . n A 1 104 ALA 104 125 125 ALA ALA A . n A 1 105 GLN 105 126 126 GLN GLN A . n A 1 106 ASN 106 127 127 ASN ASN A . n A 1 107 VAL 107 128 128 VAL VAL A . n A 1 108 THR 108 129 129 THR THR A . n A 1 109 ALA 109 130 130 ALA ALA A . n A 1 110 ASP 110 131 131 ASP ASP A . n A 1 111 THR 111 132 132 THR THR A . n A 1 112 TYR 112 133 133 TYR TYR A . n A 1 113 PRO 113 134 134 PRO PRO A . n A 1 114 ILE 114 135 135 ILE ILE A . n A 1 115 THR 115 136 136 THR THR A . n A 1 116 LEU 116 137 137 LEU LEU A . n A 1 117 ASP 117 138 138 ASP ASP A . n A 1 118 VAL 118 139 139 VAL VAL A . n A 1 119 VAL 119 140 140 VAL VAL A . n A 1 120 GLY 120 141 141 GLY GLY A . n A 1 121 TYR 121 142 142 TYR TYR A . n A 1 122 GLN 122 143 143 GLN GLN A . n A 1 123 PRO 123 144 144 PRO PRO A . n B 2 1 GLY 1 1 1 GLY GLY B . n B 2 2 SER 2 2 2 SER SER B . n B 2 3 PHE 3 3 3 PHE PHE B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 PRO 5 5 5 PRO PRO B . n B 2 6 ASN 6 6 6 ASN ASN B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLU 8 8 8 GLU GLU B . n B 2 9 GLN 9 9 9 GLN GLN B . n B 2 10 GLN 10 10 10 GLN GLN B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 VAL 13 13 13 VAL VAL B . n B 2 14 ASP 14 14 14 ASP ASP B . n B 2 15 ILE 15 15 15 ILE ILE B . n B 2 16 VAL 16 16 16 VAL VAL B . n B 2 17 PHE 17 17 17 PHE PHE B . n B 2 18 SER 18 18 18 SER SER B . n B 2 19 SER 19 19 19 SER SER B . n B 2 20 PRO 20 20 20 PRO PRO B . n B 2 21 GLN 21 21 21 GLN GLN B . n B 2 22 ASP 22 22 22 ASP ASP B . n B 2 23 LEU 23 23 23 LEU LEU B . n B 2 24 THR 24 24 24 THR THR B . n B 2 25 VAL 25 25 25 VAL VAL B . n B 2 26 SER 26 26 26 SER SER B . n B 2 27 LEU 27 27 27 LEU LEU B . n B 2 28 ILE 28 28 28 ILE ILE B . n B 2 29 PRO 29 29 29 PRO PRO B . n B 2 30 VAL 30 30 30 VAL VAL B . n B 2 31 SER 31 31 31 SER SER B . n B 2 32 GLY 32 32 32 GLY GLY B . n B 2 33 LEU 33 33 33 LEU LEU B . n B 2 34 LYS 34 34 34 LYS LYS B . n B 2 35 ALA 35 35 35 ALA ALA B . n B 2 36 GLY 36 36 36 GLY GLY B . n B 2 37 LYS 37 37 37 LYS LYS B . n B 2 38 ASN 38 38 38 ASN ASN B . n B 2 39 ALA 39 39 39 ALA ALA B . n B 2 40 PRO 40 40 40 PRO PRO B . n B 2 41 SER 41 41 41 SER SER B . n B 2 42 ALA 42 42 42 ALA ALA B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 ALA 45 45 45 ALA ALA B . n B 2 46 LYS 46 46 46 LYS LYS B . n B 2 47 LEU 47 47 47 LEU LEU B . n B 2 48 VAL 48 48 48 VAL VAL B . n B 2 49 VAL 49 49 49 VAL VAL B . n B 2 50 ASN 50 50 50 ASN ASN B . n B 2 51 SER 51 51 51 SER SER B . n B 2 52 THR 52 52 52 THR THR B . n B 2 53 THR 53 53 53 THR THR B . n B 2 54 LEU 54 54 54 LEU LEU B . n B 2 55 LYS 55 55 55 LYS LYS B . n B 2 56 GLU 56 56 56 GLU GLU B . n B 2 57 PHE 57 57 57 PHE PHE B . n B 2 58 GLY 58 58 58 GLY GLY B . n B 2 59 VAL 59 59 59 VAL VAL B . n B 2 60 ARG 60 60 60 ARG ARG B . n B 2 61 GLY 61 61 61 GLY GLY B . n B 2 62 ILE 62 62 62 ILE ILE B . n B 2 63 SER 63 63 63 SER SER B . n B 2 64 ASN 64 64 64 ASN ASN B . n B 2 65 ASN 65 65 65 ASN ASN B . n B 2 66 VAL 66 66 66 VAL VAL B . n B 2 67 VAL 67 67 67 VAL VAL B . n B 2 68 ASP 68 68 68 ASP ASP B . n B 2 69 SER 69 69 69 SER SER B . n B 2 70 THR 70 70 70 THR THR B . n B 2 71 GLY 71 71 71 GLY GLY B . n B 2 72 THR 72 72 72 THR THR B . n B 2 73 ALA 73 73 73 ALA ALA B . n B 2 74 TRP 74 74 74 TRP TRP B . n B 2 75 ARG 75 75 75 ARG ARG B . n B 2 76 VAL 76 76 76 VAL VAL B . n B 2 77 ALA 77 77 77 ALA ALA B . n B 2 78 GLY 78 78 78 GLY GLY B . n B 2 79 LYS 79 79 79 LYS LYS B . n B 2 80 ASN 80 80 80 ASN ASN B . n B 2 81 THR 81 81 81 THR THR B . n B 2 82 GLY 82 82 82 GLY GLY B . n B 2 83 LYS 83 83 83 LYS LYS B . n B 2 84 GLU 84 84 84 GLU GLU B . n B 2 85 ILE 85 85 85 ILE ILE B . n B 2 86 GLY 86 86 86 GLY GLY B . n B 2 87 VAL 87 87 87 VAL VAL B . n B 2 88 GLY 88 88 88 GLY GLY B . n B 2 89 LEU 89 89 89 LEU LEU B . n B 2 90 SER 90 90 90 SER SER B . n B 2 91 SER 91 91 91 SER SER B . n B 2 92 ASP 92 92 92 ASP ASP B . n B 2 93 SER 93 93 93 SER SER B . n B 2 94 LEU 94 94 94 LEU LEU B . n B 2 95 ARG 95 95 95 ARG ARG B . n B 2 96 ARG 96 96 96 ARG ARG B . n B 2 97 SER 97 97 97 SER SER B . n B 2 98 ASP 98 98 98 ASP ASP B . n B 2 99 SER 99 99 99 SER SER B . n B 2 100 THR 100 100 100 THR THR B . n B 2 101 GLU 101 101 101 GLU GLU B . n B 2 102 LYS 102 102 102 LYS LYS B . n B 2 103 TRP 103 103 103 TRP TRP B . n B 2 104 ASN 104 104 104 ASN ASN B . n B 2 105 GLY 105 105 105 GLY GLY B . n B 2 106 VAL 106 106 106 VAL VAL B . n B 2 107 ASN 107 107 107 ASN ASN B . n B 2 108 TRP 108 108 108 TRP TRP B . n B 2 109 MET 109 109 109 MET MET B . n B 2 110 THR 110 110 110 THR THR B . n B 2 111 PHE 111 111 111 PHE PHE B . n B 2 112 ASN 112 112 112 ASN ASN B . n B 2 113 SER 113 113 113 SER SER B . n B 2 114 ASN 114 114 114 ASN ASN B . n B 2 115 ASP 115 115 115 ASP ASP B . n B 2 116 THR 116 116 116 THR THR B . n B 2 117 LEU 117 117 117 LEU LEU B . n B 2 118 ASP 118 118 118 ASP ASP B . n B 2 119 ILE 119 119 119 ILE ILE B . n B 2 120 VAL 120 120 120 VAL VAL B . n B 2 121 LEU 121 121 121 LEU LEU B . n B 2 122 THR 122 122 122 THR THR B . n B 2 123 GLY 123 123 123 GLY GLY B . n B 2 124 PRO 124 124 124 PRO PRO B . n B 2 125 ALA 125 125 125 ALA ALA B . n B 2 126 GLN 126 126 126 GLN GLN B . n B 2 127 ASN 127 127 127 ASN ASN B . n B 2 128 VAL 128 128 128 VAL VAL B . n B 2 129 THR 129 129 129 THR THR B . n B 2 130 ALA 130 130 130 ALA ALA B . n B 2 131 ASP 131 131 131 ASP ASP B . n B 2 132 THR 132 132 132 THR THR B . n B 2 133 TYR 133 133 133 TYR TYR B . n B 2 134 PRO 134 134 134 PRO PRO B . n B 2 135 ILE 135 135 135 ILE ILE B . n B 2 136 THR 136 136 136 THR THR B . n B 2 137 LEU 137 137 137 LEU LEU B . n B 2 138 ASP 138 138 138 ASP ASP B . n B 2 139 VAL 139 139 139 VAL VAL B . n B 2 140 VAL 140 140 140 VAL VAL B . n B 2 141 GLY 141 141 141 GLY GLY B . n B 2 142 TYR 142 142 142 TYR TYR B . n B 2 143 GLN 143 143 143 GLN GLN B . n B 2 144 PRO 144 144 144 PRO PRO B . n C 3 1 GLY 1 1 1 GLY GLY C . n C 3 2 SER 2 2 2 SER SER C . n C 3 3 PHE 3 3 3 PHE PHE C . n C 3 4 LEU 4 4 4 LEU LEU C . n C 3 5 PRO 5 5 5 PRO PRO C . n C 3 6 ASN 6 6 6 ASN ASN C . n C 3 7 SER 7 7 7 SER SER C . n C 3 8 GLU 8 8 8 GLU GLU C . n C 3 9 GLN 9 9 9 GLN GLN C . n C 3 10 GLN 10 10 10 GLN GLN C . n C 3 11 LYS 11 11 11 LYS LYS C . n C 3 12 SER 12 12 12 SER SER C . n C 3 13 VAL 13 13 13 VAL VAL C . n C 3 14 ASP 14 14 14 ASP ASP C . n C 3 15 ILE 15 15 15 ILE ILE C . n C 3 16 VAL 16 16 16 VAL VAL C . n C 3 17 PHE 17 17 17 PHE PHE C . n C 3 18 SER 18 18 18 SER SER C . n C 3 19 SER 19 19 19 SER SER C . n # _exptl.entry_id 3CRF _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2135 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2135 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3CRF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3CRF _struct.title 'Electron Microscopy model of the Saf Pilus- Type B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CRF _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'SafA protein polymer, Type B Saf Pilus, Fibril Protein, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q8ZRK4_SALTY Q8ZRK4 1 ;DLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTE KWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQP ; 48 ? 2 UNP Q8ZRK4_SALTY Q8ZRK4 2 ;GSFLPNSEQQKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKN TGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQP ; 27 ? 3 UNP Q8ZRK4_SALTY Q8ZRK4 3 GSFLPNSEQQKSVDIVFSS 27 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CRF A 1 ? 123 ? Q8ZRK4 48 ? 170 ? 22 144 2 2 3CRF B 1 ? 144 ? Q8ZRK4 27 ? 170 ? 1 144 3 3 3CRF C 1 ? 19 ? Q8ZRK4 27 ? 45 ? 1 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 69 ? ARG A 75 ? SER A 90 ARG A 96 1 ? 7 HELX_P HELX_P2 2 SER B 90 ? ARG B 96 ? SER B 90 ARG B 96 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 18 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 18 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 19 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 19 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 5 ? D ? 6 ? E ? 2 ? F ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 3 ? PRO A 8 ? THR A 24 PRO A 29 A 2 LYS A 22 ? ASN A 29 ? LYS A 43 ASN A 50 A 3 ASP A 94 ? LEU A 100 ? ASP A 115 LEU A 121 A 4 GLU A 63 ? LEU A 68 ? GLU A 84 LEU A 89 A 5 ALA A 52 ? ALA A 56 ? ALA A 73 ALA A 77 B 1 GLY A 15 ? LYS A 16 ? GLY A 36 LYS A 37 B 2 ASN A 106 ? VAL A 107 ? ASN A 127 VAL A 128 C 1 SER A 78 ? TRP A 82 ? SER A 99 TRP A 103 C 2 VAL A 85 ? ASN A 91 ? VAL A 106 ASN A 112 C 3 GLU A 35 ? ILE A 41 ? GLU A 56 ILE A 62 C 4 THR A 111 ? GLN A 122 ? THR A 132 GLN A 143 C 5 SER B 2 ? VAL B 16 ? SER B 2 VAL B 16 D 1 THR B 24 ? PRO B 29 ? THR B 24 PRO B 29 D 2 LYS B 43 ? ASN B 50 ? LYS B 43 ASN B 50 D 3 THR B 116 ? LEU B 121 ? THR B 116 LEU B 121 D 4 GLU B 84 ? LEU B 89 ? GLU B 84 LEU B 89 D 5 ALA B 73 ? ALA B 77 ? ALA B 73 ALA B 77 D 6 ASN B 65 ? VAL B 66 ? ASN B 65 VAL B 66 E 1 GLY B 36 ? LYS B 37 ? GLY B 36 LYS B 37 E 2 ASN B 127 ? VAL B 128 ? ASN B 127 VAL B 128 F 1 SER B 99 ? TRP B 103 ? SER B 99 TRP B 103 F 2 VAL B 106 ? ASN B 112 ? VAL B 106 ASN B 112 F 3 GLU B 56 ? ILE B 62 ? GLU B 56 ILE B 62 F 4 ASP B 131 ? GLN B 143 ? ASP B 131 GLN B 143 F 5 SER C 2 ? PHE C 17 ? SER C 2 PHE C 17 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 3 ? N THR A 24 O ASN A 29 ? O ASN A 50 A 2 3 N ILE A 23 ? N ILE A 44 O ILE A 98 ? O ILE A 119 A 3 4 O VAL A 99 ? O VAL A 120 N GLY A 67 ? N GLY A 88 A 4 5 O ILE A 64 ? O ILE A 85 N VAL A 55 ? N VAL A 76 B 1 2 N GLY A 15 ? N GLY A 36 O VAL A 107 ? O VAL A 128 C 1 2 N SER A 78 ? N SER A 99 O THR A 89 ? O THR A 110 C 2 3 O PHE A 90 ? O PHE A 111 N PHE A 36 ? N PHE A 57 C 3 4 N ARG A 39 ? N ARG A 60 O ASP A 117 ? O ASP A 138 C 4 5 N TYR A 112 ? N TYR A 133 O ILE B 15 ? O ILE B 15 D 1 2 N THR B 24 ? N THR B 24 O ASN B 50 ? O ASN B 50 D 2 3 N ILE B 44 ? N ILE B 44 O ILE B 119 ? O ILE B 119 D 3 4 O VAL B 120 ? O VAL B 120 N GLY B 88 ? N GLY B 88 D 4 5 O VAL B 87 ? O VAL B 87 N TRP B 74 ? N TRP B 74 D 5 6 O ARG B 75 ? O ARG B 75 N ASN B 65 ? N ASN B 65 E 1 2 N GLY B 36 ? N GLY B 36 O VAL B 128 ? O VAL B 128 F 1 2 N SER B 99 ? N SER B 99 O THR B 110 ? O THR B 110 F 2 3 O PHE B 111 ? O PHE B 111 N PHE B 57 ? N PHE B 57 F 3 4 N GLY B 58 ? N GLY B 58 O VAL B 140 ? O VAL B 140 F 4 5 N VAL B 139 ? N VAL B 139 O GLN C 9 ? O GLN C 9 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 75 ? ? CZ A ARG 75 ? ? NH1 A ARG 75 ? ? 123.46 120.30 3.16 0.50 N 2 1 CB B ASP 14 ? ? CG B ASP 14 ? ? OD1 B ASP 14 ? ? 125.20 118.30 6.90 0.90 N 3 1 NE B ARG 96 ? ? CZ B ARG 96 ? ? NH2 B ARG 96 ? ? 124.54 120.30 4.24 0.50 N 4 1 CE2 B TRP 103 ? ? CD2 B TRP 103 ? ? CG B TRP 103 ? ? 102.37 107.30 -4.93 0.80 N 5 1 CE2 B TRP 108 ? ? CD2 B TRP 108 ? ? CG B TRP 108 ? ? 102.31 107.30 -4.99 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 65 ? ? -157.20 83.80 2 1 PRO A 124 ? ? -63.36 -169.67 3 1 ALA A 125 ? ? -61.59 68.78 4 1 ALA A 130 ? ? -58.94 77.32 5 1 GLN B 21 ? ? -131.77 -76.48 6 1 THR B 52 ? ? -105.65 -62.25 7 1 THR B 53 ? ? -66.81 15.80 8 1 LYS B 55 ? ? -138.24 -67.38 9 1 ASN B 65 ? ? -157.15 83.87 10 1 LYS B 102 ? ? -116.27 73.09 11 1 TRP B 103 ? ? -44.08 100.89 12 1 ASN B 104 ? ? 38.93 41.34 13 1 ASN B 112 ? ? -49.74 109.04 14 1 ASN B 114 ? ? 102.31 -24.91 15 1 SER C 2 ? ? 172.48 -176.92 16 1 ASN C 6 ? ? -30.51 -38.98 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3CRF _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.details 'REFINEMENT PROTOCOL--Rigid body' _em_3d_fitting.method ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 2CO4 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 2CO4 _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 3CRF _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 8500 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Cross-common lines' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 1.591 _em_3d_reconstruction.resolution 17 _em_3d_reconstruction.magnification_calibration . _em_3d_reconstruction.details . _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '10 mM TRIS-HCl (pH 8) and 10 mM NaCl' _em_buffer.pH 8 _em_buffer.details '10 mM TRIS-HCl (pH 8) and 10 mM NaCl' # _em_entity_assembly.id 1 _em_entity_assembly.name 'Wild-type SafA pili' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'Stained with 2% ammonium molybdate. Type B Saf pilus. Fibre.' _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3CRF _em_imaging.id 1 _em_imaging.microscope_model 'FEI TECNAI 10' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'TUNGSTEN HAIRPIN' _em_imaging.specimen_id 1 _em_imaging.date 2004-04-23 _em_imaging.temperature ? _em_imaging.nominal_defocus_min 400 _em_imaging.nominal_defocus_max 900 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.4 _em_imaging.nominal_magnification 44000 _em_imaging.calibrated_magnification ? _em_imaging.accelerating_voltage 100 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Continuous-carbon film' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_experiment.entry_id 3CRF _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # _em_single_particle_entity.entry_id 3CRF _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 MET N N N N 192 MET CA C N S 193 MET C C N N 194 MET O O N N 195 MET CB C N N 196 MET CG C N N 197 MET SD S N N 198 MET CE C N N 199 MET OXT O N N 200 MET H H N N 201 MET H2 H N N 202 MET HA H N N 203 MET HB2 H N N 204 MET HB3 H N N 205 MET HG2 H N N 206 MET HG3 H N N 207 MET HE1 H N N 208 MET HE2 H N N 209 MET HE3 H N N 210 MET HXT H N N 211 PHE N N N N 212 PHE CA C N S 213 PHE C C N N 214 PHE O O N N 215 PHE CB C N N 216 PHE CG C Y N 217 PHE CD1 C Y N 218 PHE CD2 C Y N 219 PHE CE1 C Y N 220 PHE CE2 C Y N 221 PHE CZ C Y N 222 PHE OXT O N N 223 PHE H H N N 224 PHE H2 H N N 225 PHE HA H N N 226 PHE HB2 H N N 227 PHE HB3 H N N 228 PHE HD1 H N N 229 PHE HD2 H N N 230 PHE HE1 H N N 231 PHE HE2 H N N 232 PHE HZ H N N 233 PHE HXT H N N 234 PRO N N N N 235 PRO CA C N S 236 PRO C C N N 237 PRO O O N N 238 PRO CB C N N 239 PRO CG C N N 240 PRO CD C N N 241 PRO OXT O N N 242 PRO H H N N 243 PRO HA H N N 244 PRO HB2 H N N 245 PRO HB3 H N N 246 PRO HG2 H N N 247 PRO HG3 H N N 248 PRO HD2 H N N 249 PRO HD3 H N N 250 PRO HXT H N N 251 SER N N N N 252 SER CA C N S 253 SER C C N N 254 SER O O N N 255 SER CB C N N 256 SER OG O N N 257 SER OXT O N N 258 SER H H N N 259 SER H2 H N N 260 SER HA H N N 261 SER HB2 H N N 262 SER HB3 H N N 263 SER HG H N N 264 SER HXT H N N 265 THR N N N N 266 THR CA C N S 267 THR C C N N 268 THR O O N N 269 THR CB C N R 270 THR OG1 O N N 271 THR CG2 C N N 272 THR OXT O N N 273 THR H H N N 274 THR H2 H N N 275 THR HA H N N 276 THR HB H N N 277 THR HG1 H N N 278 THR HG21 H N N 279 THR HG22 H N N 280 THR HG23 H N N 281 THR HXT H N N 282 TRP N N N N 283 TRP CA C N S 284 TRP C C N N 285 TRP O O N N 286 TRP CB C N N 287 TRP CG C Y N 288 TRP CD1 C Y N 289 TRP CD2 C Y N 290 TRP NE1 N Y N 291 TRP CE2 C Y N 292 TRP CE3 C Y N 293 TRP CZ2 C Y N 294 TRP CZ3 C Y N 295 TRP CH2 C Y N 296 TRP OXT O N N 297 TRP H H N N 298 TRP H2 H N N 299 TRP HA H N N 300 TRP HB2 H N N 301 TRP HB3 H N N 302 TRP HD1 H N N 303 TRP HE1 H N N 304 TRP HE3 H N N 305 TRP HZ2 H N N 306 TRP HZ3 H N N 307 TRP HH2 H N N 308 TRP HXT H N N 309 TYR N N N N 310 TYR CA C N S 311 TYR C C N N 312 TYR O O N N 313 TYR CB C N N 314 TYR CG C Y N 315 TYR CD1 C Y N 316 TYR CD2 C Y N 317 TYR CE1 C Y N 318 TYR CE2 C Y N 319 TYR CZ C Y N 320 TYR OH O N N 321 TYR OXT O N N 322 TYR H H N N 323 TYR H2 H N N 324 TYR HA H N N 325 TYR HB2 H N N 326 TYR HB3 H N N 327 TYR HD1 H N N 328 TYR HD2 H N N 329 TYR HE1 H N N 330 TYR HE2 H N N 331 TYR HH H N N 332 TYR HXT H N N 333 VAL N N N N 334 VAL CA C N S 335 VAL C C N N 336 VAL O O N N 337 VAL CB C N N 338 VAL CG1 C N N 339 VAL CG2 C N N 340 VAL OXT O N N 341 VAL H H N N 342 VAL H2 H N N 343 VAL HA H N N 344 VAL HB H N N 345 VAL HG11 H N N 346 VAL HG12 H N N 347 VAL HG13 H N N 348 VAL HG21 H N N 349 VAL HG22 H N N 350 VAL HG23 H N N 351 VAL HXT H N N 352 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 LYS N CA sing N N 158 LYS N H sing N N 159 LYS N H2 sing N N 160 LYS CA C sing N N 161 LYS CA CB sing N N 162 LYS CA HA sing N N 163 LYS C O doub N N 164 LYS C OXT sing N N 165 LYS CB CG sing N N 166 LYS CB HB2 sing N N 167 LYS CB HB3 sing N N 168 LYS CG CD sing N N 169 LYS CG HG2 sing N N 170 LYS CG HG3 sing N N 171 LYS CD CE sing N N 172 LYS CD HD2 sing N N 173 LYS CD HD3 sing N N 174 LYS CE NZ sing N N 175 LYS CE HE2 sing N N 176 LYS CE HE3 sing N N 177 LYS NZ HZ1 sing N N 178 LYS NZ HZ2 sing N N 179 LYS NZ HZ3 sing N N 180 LYS OXT HXT sing N N 181 MET N CA sing N N 182 MET N H sing N N 183 MET N H2 sing N N 184 MET CA C sing N N 185 MET CA CB sing N N 186 MET CA HA sing N N 187 MET C O doub N N 188 MET C OXT sing N N 189 MET CB CG sing N N 190 MET CB HB2 sing N N 191 MET CB HB3 sing N N 192 MET CG SD sing N N 193 MET CG HG2 sing N N 194 MET CG HG3 sing N N 195 MET SD CE sing N N 196 MET CE HE1 sing N N 197 MET CE HE2 sing N N 198 MET CE HE3 sing N N 199 MET OXT HXT sing N N 200 PHE N CA sing N N 201 PHE N H sing N N 202 PHE N H2 sing N N 203 PHE CA C sing N N 204 PHE CA CB sing N N 205 PHE CA HA sing N N 206 PHE C O doub N N 207 PHE C OXT sing N N 208 PHE CB CG sing N N 209 PHE CB HB2 sing N N 210 PHE CB HB3 sing N N 211 PHE CG CD1 doub Y N 212 PHE CG CD2 sing Y N 213 PHE CD1 CE1 sing Y N 214 PHE CD1 HD1 sing N N 215 PHE CD2 CE2 doub Y N 216 PHE CD2 HD2 sing N N 217 PHE CE1 CZ doub Y N 218 PHE CE1 HE1 sing N N 219 PHE CE2 CZ sing Y N 220 PHE CE2 HE2 sing N N 221 PHE CZ HZ sing N N 222 PHE OXT HXT sing N N 223 PRO N CA sing N N 224 PRO N CD sing N N 225 PRO N H sing N N 226 PRO CA C sing N N 227 PRO CA CB sing N N 228 PRO CA HA sing N N 229 PRO C O doub N N 230 PRO C OXT sing N N 231 PRO CB CG sing N N 232 PRO CB HB2 sing N N 233 PRO CB HB3 sing N N 234 PRO CG CD sing N N 235 PRO CG HG2 sing N N 236 PRO CG HG3 sing N N 237 PRO CD HD2 sing N N 238 PRO CD HD3 sing N N 239 PRO OXT HXT sing N N 240 SER N CA sing N N 241 SER N H sing N N 242 SER N H2 sing N N 243 SER CA C sing N N 244 SER CA CB sing N N 245 SER CA HA sing N N 246 SER C O doub N N 247 SER C OXT sing N N 248 SER CB OG sing N N 249 SER CB HB2 sing N N 250 SER CB HB3 sing N N 251 SER OG HG sing N N 252 SER OXT HXT sing N N 253 THR N CA sing N N 254 THR N H sing N N 255 THR N H2 sing N N 256 THR CA C sing N N 257 THR CA CB sing N N 258 THR CA HA sing N N 259 THR C O doub N N 260 THR C OXT sing N N 261 THR CB OG1 sing N N 262 THR CB CG2 sing N N 263 THR CB HB sing N N 264 THR OG1 HG1 sing N N 265 THR CG2 HG21 sing N N 266 THR CG2 HG22 sing N N 267 THR CG2 HG23 sing N N 268 THR OXT HXT sing N N 269 TRP N CA sing N N 270 TRP N H sing N N 271 TRP N H2 sing N N 272 TRP CA C sing N N 273 TRP CA CB sing N N 274 TRP CA HA sing N N 275 TRP C O doub N N 276 TRP C OXT sing N N 277 TRP CB CG sing N N 278 TRP CB HB2 sing N N 279 TRP CB HB3 sing N N 280 TRP CG CD1 doub Y N 281 TRP CG CD2 sing Y N 282 TRP CD1 NE1 sing Y N 283 TRP CD1 HD1 sing N N 284 TRP CD2 CE2 doub Y N 285 TRP CD2 CE3 sing Y N 286 TRP NE1 CE2 sing Y N 287 TRP NE1 HE1 sing N N 288 TRP CE2 CZ2 sing Y N 289 TRP CE3 CZ3 doub Y N 290 TRP CE3 HE3 sing N N 291 TRP CZ2 CH2 doub Y N 292 TRP CZ2 HZ2 sing N N 293 TRP CZ3 CH2 sing Y N 294 TRP CZ3 HZ3 sing N N 295 TRP CH2 HH2 sing N N 296 TRP OXT HXT sing N N 297 TYR N CA sing N N 298 TYR N H sing N N 299 TYR N H2 sing N N 300 TYR CA C sing N N 301 TYR CA CB sing N N 302 TYR CA HA sing N N 303 TYR C O doub N N 304 TYR C OXT sing N N 305 TYR CB CG sing N N 306 TYR CB HB2 sing N N 307 TYR CB HB3 sing N N 308 TYR CG CD1 doub Y N 309 TYR CG CD2 sing Y N 310 TYR CD1 CE1 sing Y N 311 TYR CD1 HD1 sing N N 312 TYR CD2 CE2 doub Y N 313 TYR CD2 HD2 sing N N 314 TYR CE1 CZ doub Y N 315 TYR CE1 HE1 sing N N 316 TYR CE2 CZ sing Y N 317 TYR CE2 HE2 sing N N 318 TYR CZ OH sing N N 319 TYR OH HH sing N N 320 TYR OXT HXT sing N N 321 VAL N CA sing N N 322 VAL N H sing N N 323 VAL N H2 sing N N 324 VAL CA C sing N N 325 VAL CA CB sing N N 326 VAL CA HA sing N N 327 VAL C O doub N N 328 VAL C OXT sing N N 329 VAL CB CG1 sing N N 330 VAL CB CG2 sing N N 331 VAL CB HB sing N N 332 VAL CG1 HG11 sing N N 333 VAL CG1 HG12 sing N N 334 VAL CG1 HG13 sing N N 335 VAL CG2 HG21 sing N N 336 VAL CG2 HG22 sing N N 337 VAL CG2 HG23 sing N N 338 VAL OXT HXT sing N N 339 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 25 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 URO ? 'MODEL FITTING' ? ? 2 IMAGIC ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied NO _em_specimen.staining_applied YES _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _em_staining.id 1 _em_staining.specimen_id 1 _em_staining.material 'Ammonium Molybdate' _em_staining.type NEGATIVE # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CO4 # _atom_sites.entry_id 3CRF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_