HEADER DE NOVO PROTEIN, SUGAR BINDING PROTEIN 09-APR-08 3CSB TITLE CRYSTAL STRUCTURE OF MONOBODY YSX1/MALTOSE BINDING PROTEIN FUSION TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PROTEIN MONOBODY YSX1 FUSION; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MBP; MALTODEXTRIN-BINDING PROTEIN; MMBP; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: MALE INCLUDES RESIDUES 5-370, MONOBODY YSX1 377-467, COMPND 7 371-373 COMPRISE AN ENGINEERED LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, SYNTHETIC; SOURCE 3 GENE: MALE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHFT3 KEYWDS ENGINEERED BINDING PROTEIN, ANTIBODY MIMIC, SYNTHETIC PROTEIN KEYWDS 2 INTERFACE, MINIMALIST PROTEIN INTERFACE, DE NOVO PROTEIN, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.N.GILBRETH,S.KOIDE REVDAT 5 21-FEB-24 3CSB 1 REMARK REVDAT 4 24-JUL-19 3CSB 1 REMARK REVDAT 3 25-OCT-17 3CSB 1 REMARK REVDAT 2 24-FEB-09 3CSB 1 VERSN REVDAT 1 22-JUL-08 3CSB 0 JRNL AUTH R.N.GILBRETH,K.ESAKI,A.KOIDE,S.S.SIDHU,S.KOIDE JRNL TITL A DOMINANT CONFORMATIONAL ROLE FOR AMINO ACID DIVERSITY IN JRNL TITL 2 MINIMALIST PROTEIN-PROTEIN INTERFACES JRNL REF J.MOL.BIOL. V. 381 407 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18602117 JRNL DOI 10.1016/J.JMB.2008.06.014 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.KOIDE,R.N.GILBRETH,K.ESAKI,V.TERESHKO,S.KOIDE REMARK 1 TITL HIGH AFFINITY SINGLE-DOMAIN BINDING PROTEINS WITH A BINARY REMARK 1 TITL 2 CODE INTERFACE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 104 6632 2007 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4569 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2959 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 329 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3798 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5128 ; 1.522 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 5.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;34.875 ;25.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;16.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2826 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1651 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2595 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2390 ; 1.229 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3741 ; 1.899 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 2.734 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1384 ; 4.007 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR AND REMARK 200 K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 5.2.0019, REFMAC 5.2.0019 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 41% POLYETHELYENEGLYCOL-400, 2% 2 REMARK 280 -METHYL-2,4-PENTANEDIOL, 50 MM MNCL2, 0.1 M 2-(N-MORPHOLINO) REMARK 280 ETHANESULFONIC ACID, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.30950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.40900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.40900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.65475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.40900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.40900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.96425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.40900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.40900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.65475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.40900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.40900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 100.96425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.30950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 39 56.46 -144.90 REMARK 500 THR A 53 -73.91 -118.75 REMARK 500 ASP A 55 64.27 -107.53 REMARK 500 ALA A 168 -70.19 -83.37 REMARK 500 LYS A 370 98.60 -37.86 REMARK 500 THR A 379 156.59 51.49 REMARK 500 LEU A 381 79.08 59.05 REMARK 500 ASN A 417 82.61 -64.81 REMARK 500 SER A 459 63.10 175.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1224 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD1 REMARK 620 2 GLU A 310 OE1 97.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OBG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MONOBODY YS1/MALTOSE BINDING PROTEIN FUSION REMARK 900 COMPLEX REMARK 900 RELATED ID: 3CSG RELATED DB: PDB DBREF 3CSB A 5 370 UNP P0AEX9 MALE_ECOLI 31 396 SEQRES 1 A 465 GLY THR GLY LYS LEU VAL ILE TRP ILE ASN GLY ASP LYS SEQRES 2 A 465 GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS PHE GLU SEQRES 3 A 465 LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS PRO ASP SEQRES 4 A 465 LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA THR GLY SEQRES 5 A 465 ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP ARG PHE SEQRES 6 A 465 GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU ILE THR SEQRES 7 A 465 PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO PHE THR SEQRES 8 A 465 TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE ALA TYR SEQRES 9 A 465 PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR ASN LYS SEQRES 10 A 465 ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU GLU ILE SEQRES 11 A 465 PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY LYS SER SEQRES 12 A 465 ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE THR TRP SEQRES 13 A 465 PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE LYS TYR SEQRES 14 A 465 GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY VAL ASP SEQRES 15 A 465 ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU VAL ASP SEQRES 16 A 465 LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR ASP TYR SEQRES 17 A 465 SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU THR ALA SEQRES 18 A 465 MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN ILE ASP SEQRES 19 A 465 THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU PRO THR SEQRES 20 A 465 PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY VAL LEU SEQRES 21 A 465 SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS GLU LEU SEQRES 22 A 465 ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR ASP GLU SEQRES 23 A 465 GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU GLY ALA SEQRES 24 A 465 VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA LYS ASP SEQRES 25 A 465 PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN LYS GLY SEQRES 26 A 465 GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA PHE TRP SEQRES 27 A 465 TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SER GLY SEQRES 28 A 465 ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA GLN THR SEQRES 29 A 465 ARG ILE THR LYS GLY SER SER GLY SER SER VAL PRO THR SEQRES 30 A 465 ASN LEU GLU VAL VAL ALA ALA THR PRO THR SER LEU LEU SEQRES 31 A 465 ILE SER TRP ASP ALA TYR SER SER SER TYR TYR VAL TYR SEQRES 32 A 465 TYR TYR ARG ILE THR TYR GLY GLU THR GLY GLY ASN SER SEQRES 33 A 465 PRO VAL GLN GLU PHE THR VAL PRO GLY SER LYS SER THR SEQRES 34 A 465 ALA THR ILE SER GLY LEU LYS PRO GLY VAL ASP TYR THR SEQRES 35 A 465 ILE THR VAL TYR ALA GLY HIS TYR LEU TYR GLY LEU LEU SEQRES 36 A 465 SER SER PRO ILE SER ILE ASN TYR ARG THR HET MN A1223 1 HET MN A1224 1 HET MN A1225 1 HET MN A1226 1 HET EDO A1009 4 HET EDO A1010 4 HET PGE A1011 10 HET PG4 A1013 13 HET 1PE A1014 16 HET PEG A1001 7 HET PEG A1002 7 HET PEG A1003 7 HET PEG A1004 7 HET PEG A1005 7 HET PEG A1006 7 HET PEG A1007 7 HET PEG A1008 7 HET PEG A1012 7 HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 MN 4(MN 2+) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 PGE C6 H14 O4 FORMUL 9 PG4 C8 H18 O5 FORMUL 10 1PE C10 H22 O6 FORMUL 11 PEG 9(C4 H10 O3) FORMUL 20 HOH *208(H2 O) HELIX 1 1 GLY A 16 GLY A 32 1 17 HELIX 2 2 LYS A 42 ALA A 51 1 10 HELIX 3 3 ARG A 66 SER A 73 1 8 HELIX 4 4 ASP A 82 ASP A 87 1 6 HELIX 5 5 TYR A 90 ASP A 95 1 6 HELIX 6 6 THR A 128 GLU A 130 5 3 HELIX 7 7 GLU A 131 ALA A 141 1 11 HELIX 8 8 GLU A 153 ASP A 164 1 12 HELIX 9 9 ASN A 185 ASN A 201 1 17 HELIX 10 10 ASP A 209 LYS A 219 1 11 HELIX 11 11 GLY A 228 TRP A 230 5 3 HELIX 12 12 ALA A 231 THR A 237 1 7 HELIX 13 13 ASN A 272 TYR A 283 1 12 HELIX 14 14 THR A 286 LYS A 297 1 12 HELIX 15 15 LEU A 304 ALA A 312 1 9 HELIX 16 16 ASP A 314 LYS A 326 1 13 HELIX 17 17 GLN A 335 SER A 352 1 18 HELIX 18 18 THR A 356 LYS A 370 1 15 HELIX 19 19 ASP A 396 SER A 400 5 5 SHEET 1 A 6 LYS A 34 GLU A 38 0 SHEET 2 A 6 LYS A 6 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 A 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 A 6 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 A 6 TYR A 106 GLU A 111 -1 N ILE A 108 O LEU A 262 SHEET 6 A 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 B 5 LYS A 34 GLU A 38 0 SHEET 2 B 5 LYS A 6 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 B 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 B 5 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 B 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 C 2 ARG A 98 TYR A 99 0 SHEET 2 C 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 D 4 SER A 145 LEU A 147 0 SHEET 2 D 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 D 4 SER A 114 ASN A 118 -1 N ASN A 118 O ALA A 223 SHEET 4 D 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 E 2 TYR A 167 GLU A 172 0 SHEET 2 E 2 LYS A 175 GLY A 182 -1 O LYS A 175 N GLU A 172 SHEET 1 F 3 VAL A 383 ALA A 386 0 SHEET 2 F 3 LEU A 391 SER A 394 -1 O LEU A 392 N VAL A 384 SHEET 3 F 3 THR A 431 ILE A 434 -1 O ILE A 434 N LEU A 391 SHEET 1 G 4 GLN A 421 PRO A 426 0 SHEET 2 G 4 VAL A 404 GLU A 413 -1 N TYR A 411 O GLN A 421 SHEET 3 G 4 ASP A 442 HIS A 451 -1 O THR A 446 N THR A 410 SHEET 4 G 4 GLY A 455 LEU A 456 -1 O GLY A 455 N HIS A 451 SHEET 1 H 4 GLN A 421 PRO A 426 0 SHEET 2 H 4 VAL A 404 GLU A 413 -1 N TYR A 411 O GLN A 421 SHEET 3 H 4 ASP A 442 HIS A 451 -1 O THR A 446 N THR A 410 SHEET 4 H 4 ILE A 461 ARG A 466 -1 O TYR A 465 N TYR A 443 LINK O ASP A 236 MN MN A1226 1555 1555 2.39 LINK OD1 ASP A 287 MN MN A1224 1555 1555 2.34 LINK OE1 GLU A 310 MN MN A1224 1555 1555 2.22 CISPEP 1 ALA A 52 THR A 53 0 -7.89 SITE 1 AC1 3 ASP A 287 GLU A 310 ASP A 358 SITE 1 AC2 2 ASP A 236 GLU A 359 SITE 1 AC3 4 ASP A 87 LYS A 305 GLY A 353 GLN A 355 SITE 1 AC4 7 TRP A 232 PRO A 298 GLY A 300 LYS A 313 SITE 2 AC4 7 ARG A 316 HOH A1054 HOH A1064 SITE 1 AC5 9 ASN A 18 ASP A 164 ASN A 185 ALA A 186 SITE 2 AC5 9 LYS A 189 LYS A 295 ASP A 296 HOH A1192 SITE 3 AC5 9 HOH A1193 SITE 1 AC6 12 ASP A 65 ARG A 66 PRO A 331 ILE A 333 SITE 2 AC6 12 MET A 336 SER A 337 TRP A 340 TYR A 402 SITE 3 AC6 12 TYR A 405 TYR A 452 HOH A1101 HOH A1121 SITE 1 AC7 3 THR A 245 PRO A 315 ALA A 318 SITE 1 AC8 4 ALA A 397 TYR A 398 SER A 400 GLY A 427 SITE 1 AC9 5 GLU A 130 ALA A 190 PHE A 194 PHE A 250 SITE 2 AC9 5 LYS A 251 SITE 1 BC1 3 GLN A 86 TRP A 94 ARG A 98 SITE 1 BC2 4 ALA A 71 LEU A 76 GLU A 78 LYS A 102 SITE 1 BC3 7 LYS A 6 THR A 53 GLY A 56 ASP A 58 SITE 2 BC3 7 ASN A 267 ALA A 269 ASN A 272 SITE 1 BC4 2 THR A 286 GLU A 288 SITE 1 BC5 4 TYR A 167 PHE A 169 LYS A 170 TYR A 171 SITE 1 BC6 7 LYS A 15 ALA A 63 GLU A 111 LEU A 262 SITE 2 BC6 7 LEU A 299 HOH A1151 HOH A1186 CRYST1 98.818 98.818 134.619 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007428 0.00000