data_3CT8 # _entry.id 3CT8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CT8 pdb_00003ct8 10.2210/pdb3ct8/pdb RCSB RCSB047182 ? ? WWPDB D_1000047182 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367517 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3CT8 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-04-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a Putative Glyoxalase (NP_243026.1) from Bacillus halodurans at 2.10 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3CT8 _cell.length_a 51.380 _cell.length_b 51.380 _cell.length_c 116.470 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CT8 _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative glyoxalase' 17383.111 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein BH2160' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)LHHVEINVDHLEESIAFWDWLLGELGYEDYQSWSRGKSYKHGKTYLVFVQTE DRFQTPTFHRKRTGLNHLAFHAASREKVDELTQKLKERGDPILYEDRHPFAGGPNHYAVFCEDPNRIKVEIVAP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMLHHVEINVDHLEESIAFWDWLLGELGYEDYQSWSRGKSYKHGKTYLVFVQTEDRFQTPTF HRKRTGLNHLAFHAASREKVDELTQKLKERGDPILYEDRHPFAGGPNHYAVFCEDPNRIKVEIVAP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 367517 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 LEU n 1 22 HIS n 1 23 HIS n 1 24 VAL n 1 25 GLU n 1 26 ILE n 1 27 ASN n 1 28 VAL n 1 29 ASP n 1 30 HIS n 1 31 LEU n 1 32 GLU n 1 33 GLU n 1 34 SER n 1 35 ILE n 1 36 ALA n 1 37 PHE n 1 38 TRP n 1 39 ASP n 1 40 TRP n 1 41 LEU n 1 42 LEU n 1 43 GLY n 1 44 GLU n 1 45 LEU n 1 46 GLY n 1 47 TYR n 1 48 GLU n 1 49 ASP n 1 50 TYR n 1 51 GLN n 1 52 SER n 1 53 TRP n 1 54 SER n 1 55 ARG n 1 56 GLY n 1 57 LYS n 1 58 SER n 1 59 TYR n 1 60 LYS n 1 61 HIS n 1 62 GLY n 1 63 LYS n 1 64 THR n 1 65 TYR n 1 66 LEU n 1 67 VAL n 1 68 PHE n 1 69 VAL n 1 70 GLN n 1 71 THR n 1 72 GLU n 1 73 ASP n 1 74 ARG n 1 75 PHE n 1 76 GLN n 1 77 THR n 1 78 PRO n 1 79 THR n 1 80 PHE n 1 81 HIS n 1 82 ARG n 1 83 LYS n 1 84 ARG n 1 85 THR n 1 86 GLY n 1 87 LEU n 1 88 ASN n 1 89 HIS n 1 90 LEU n 1 91 ALA n 1 92 PHE n 1 93 HIS n 1 94 ALA n 1 95 ALA n 1 96 SER n 1 97 ARG n 1 98 GLU n 1 99 LYS n 1 100 VAL n 1 101 ASP n 1 102 GLU n 1 103 LEU n 1 104 THR n 1 105 GLN n 1 106 LYS n 1 107 LEU n 1 108 LYS n 1 109 GLU n 1 110 ARG n 1 111 GLY n 1 112 ASP n 1 113 PRO n 1 114 ILE n 1 115 LEU n 1 116 TYR n 1 117 GLU n 1 118 ASP n 1 119 ARG n 1 120 HIS n 1 121 PRO n 1 122 PHE n 1 123 ALA n 1 124 GLY n 1 125 GLY n 1 126 PRO n 1 127 ASN n 1 128 HIS n 1 129 TYR n 1 130 ALA n 1 131 VAL n 1 132 PHE n 1 133 CYS n 1 134 GLU n 1 135 ASP n 1 136 PRO n 1 137 ASN n 1 138 ARG n 1 139 ILE n 1 140 LYS n 1 141 VAL n 1 142 GLU n 1 143 ILE n 1 144 VAL n 1 145 ALA n 1 146 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'NP_243026.1, BH2160' _entity_src_gen.gene_src_species 'Bacillus halodurans' _entity_src_gen.gene_src_strain 'C-125 / DSM 18197 / FERM 7344 / JCM 9153' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans C-125' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272558 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-125 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9KAX6_BACHD _struct_ref.pdbx_db_accession Q9KAX6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLHHVEINVDHLEESIAFWDWLLGELGYEDYQSWSRGKSYKHGKTYLVFVQTEDRFQTPTFHRKRTGLNHLAFHAASREK VDELTQKLKERGDPILYEDRHPFAGGPNHYAVFCEDPNRIKVEIVAP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CT8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KAX6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 127 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CT8 MSE A 1 ? UNP Q9KAX6 ? ? 'expression tag' -18 1 1 3CT8 GLY A 2 ? UNP Q9KAX6 ? ? 'expression tag' -17 2 1 3CT8 SER A 3 ? UNP Q9KAX6 ? ? 'expression tag' -16 3 1 3CT8 ASP A 4 ? UNP Q9KAX6 ? ? 'expression tag' -15 4 1 3CT8 LYS A 5 ? UNP Q9KAX6 ? ? 'expression tag' -14 5 1 3CT8 ILE A 6 ? UNP Q9KAX6 ? ? 'expression tag' -13 6 1 3CT8 HIS A 7 ? UNP Q9KAX6 ? ? 'expression tag' -12 7 1 3CT8 HIS A 8 ? UNP Q9KAX6 ? ? 'expression tag' -11 8 1 3CT8 HIS A 9 ? UNP Q9KAX6 ? ? 'expression tag' -10 9 1 3CT8 HIS A 10 ? UNP Q9KAX6 ? ? 'expression tag' -9 10 1 3CT8 HIS A 11 ? UNP Q9KAX6 ? ? 'expression tag' -8 11 1 3CT8 HIS A 12 ? UNP Q9KAX6 ? ? 'expression tag' -7 12 1 3CT8 GLU A 13 ? UNP Q9KAX6 ? ? 'expression tag' -6 13 1 3CT8 ASN A 14 ? UNP Q9KAX6 ? ? 'expression tag' -5 14 1 3CT8 LEU A 15 ? UNP Q9KAX6 ? ? 'expression tag' -4 15 1 3CT8 TYR A 16 ? UNP Q9KAX6 ? ? 'expression tag' -3 16 1 3CT8 PHE A 17 ? UNP Q9KAX6 ? ? 'expression tag' -2 17 1 3CT8 GLN A 18 ? UNP Q9KAX6 ? ? 'expression tag' -1 18 1 3CT8 GLY A 19 ? UNP Q9KAX6 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3CT8 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 40.0% MPD, 5.0% PEG 8000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-02-04 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.92522 1.0 2 0.97922 1.0 3 0.97464 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.92522, 0.97922, 0.97464' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3CT8 _reflns.d_resolution_high 2.09 _reflns.d_resolution_low 26.528 _reflns.number_obs 9659 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_netI_over_sigmaI 15.300 _reflns.percent_possible_obs 97.600 _reflns.B_iso_Wilson_estimate 44.118 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.09 2.16 4806 ? 1296 0.902 1.6 ? ? ? ? ? 77.80 1 1 2.16 2.25 7068 ? 1841 0.670 2.2 ? ? ? ? ? 99.60 2 1 2.25 2.35 6573 ? 1718 0.522 2.8 ? ? ? ? ? 99.50 3 1 2.35 2.48 7064 ? 1836 0.357 4.0 ? ? ? ? ? 99.60 4 1 2.48 2.63 6598 ? 1713 0.218 6.2 ? ? ? ? ? 99.90 5 1 2.63 2.83 6746 ? 1751 0.138 9.5 ? ? ? ? ? 99.90 6 1 2.83 3.12 6986 ? 1804 0.077 15.5 ? ? ? ? ? 99.90 7 1 3.12 3.57 6817 ? 1761 0.042 25.3 ? ? ? ? ? 99.90 8 1 3.57 4.49 6793 ? 1766 0.028 37.1 ? ? ? ? ? 99.90 9 1 4.49 26.528 6874 ? 1793 0.023 45.0 ? ? ? ? ? 98.80 10 1 # _refine.entry_id 3CT8 _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 26.528 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.590 _refine.ls_number_reflns_obs 9609 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. X-RAY FLUORESCENCE EXCITATION, WAVELENGTH SCANS AND ANOMALOUS DIFFERENCE FOURIERS SUPPORT THE MODELING OF ZN ION. 5. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED NEAR THE ZN ION SITE. ; _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.246 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 461 _refine.B_iso_mean 46.793 _refine.aniso_B[1][1] 0.910 _refine.aniso_B[2][2] 0.910 _refine.aniso_B[3][3] -1.820 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.pdbx_overall_ESU_R 0.233 _refine.pdbx_overall_ESU_R_Free 0.187 _refine.overall_SU_ML 0.165 _refine.overall_SU_B 12.209 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1093 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1148 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 26.528 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1158 0.015 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 806 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1570 1.918 1.947 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1951 1.558 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 134 2.362 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 62 28.207 23.387 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 181 11.879 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 11.773 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 163 0.109 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1278 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 251 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 665 1.201 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 269 0.244 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1071 2.184 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 493 4.231 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 498 6.126 8.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.16 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.010 _refine_ls_shell.number_reflns_R_work 647 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.R_factor_R_free 0.273 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 689 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CT8 _struct.title 'Crystal structure of a putative glyoxalase (NP_243026.1) from Bacillus halodurans at 2.10 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_243026.1, Putative Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, LYASE ; _struct_keywords.pdbx_keywords LYASE _struct_keywords.entry_id 3CT8 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 30 ? LEU A 45 ? HIS A 11 LEU A 26 1 ? 16 HELX_P HELX_P2 2 GLU A 72 ? GLN A 76 ? GLU A 53 GLN A 57 5 ? 5 HELX_P HELX_P3 3 SER A 96 ? GLY A 111 ? SER A 77 GLY A 92 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A LEU 21 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.308 ? ? metalc1 metalc ? ? A HIS 89 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 70 A ZN 128 1_555 ? ? ? ? ? ? ? 2.309 ? ? metalc2 metalc ? ? A GLU 142 OE1 ? ? ? 1_555 B ZN . ZN ? ? A GLU 123 A ZN 128 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 C UNL . O1 ? ? A ZN 128 A UNL 129 1_555 ? ? ? ? ? ? ? 2.358 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 77 A . ? THR 58 A PRO 78 A ? PRO 59 A 1 -0.88 2 HIS 120 A . ? HIS 101 A PRO 121 A ? PRO 102 A 1 0.36 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 23 ? VAL A 28 ? HIS A 4 VAL A 9 A 2 THR A 64 ? GLN A 70 ? THR A 45 GLN A 51 A 3 GLY A 56 ? HIS A 61 ? GLY A 37 HIS A 42 A 4 GLU A 48 ? TRP A 53 ? GLU A 29 TRP A 34 B 1 HIS A 89 ? HIS A 93 ? HIS A 70 HIS A 74 B 2 LYS A 140 ? VAL A 144 ? LYS A 121 VAL A 125 B 3 ALA A 130 ? GLU A 134 ? ALA A 111 GLU A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 28 ? N VAL A 9 O VAL A 69 ? O VAL A 50 A 2 3 O PHE A 68 ? O PHE A 49 N LYS A 57 ? N LYS A 38 A 3 4 O LYS A 60 ? O LYS A 41 N GLU A 48 ? N GLU A 29 B 1 2 N PHE A 92 ? N PHE A 73 O VAL A 144 ? O VAL A 125 B 2 3 O VAL A 141 ? O VAL A 122 N CYS A 133 ? N CYS A 114 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 128 ? 3 'BINDING SITE FOR RESIDUE ZN A 128' AC2 Software A UNL 129 ? 7 'BINDING SITE FOR RESIDUE UNL A 129' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 23 ? HIS A 4 . ? 8_665 ? 2 AC1 3 HIS A 89 ? HIS A 70 . ? 1_555 ? 3 AC1 3 GLU A 142 ? GLU A 123 . ? 1_555 ? 4 AC2 7 HIS A 81 ? HIS A 62 . ? 1_555 ? 5 AC2 7 ARG A 82 ? ARG A 63 . ? 1_555 ? 6 AC2 7 LYS A 83 ? LYS A 64 . ? 1_555 ? 7 AC2 7 ASN A 88 ? ASN A 69 . ? 1_555 ? 8 AC2 7 TYR A 116 ? TYR A 97 . ? 1_555 ? 9 AC2 7 PHE A 132 ? PHE A 113 . ? 1_555 ? 10 AC2 7 LYS A 140 ? LYS A 121 . ? 1_555 ? # _database_PDB_matrix.entry_id 3CT8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3CT8 _atom_sites.fract_transf_matrix[1][1] 0.019463 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019463 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008586 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 LEU 21 2 2 LEU LEU A . n A 1 22 HIS 22 3 3 HIS HIS A . n A 1 23 HIS 23 4 4 HIS HIS A . n A 1 24 VAL 24 5 5 VAL VAL A . n A 1 25 GLU 25 6 6 GLU GLU A . n A 1 26 ILE 26 7 7 ILE ILE A . n A 1 27 ASN 27 8 8 ASN ASN A . n A 1 28 VAL 28 9 9 VAL VAL A . n A 1 29 ASP 29 10 10 ASP ASP A . n A 1 30 HIS 30 11 11 HIS HIS A . n A 1 31 LEU 31 12 12 LEU LEU A . n A 1 32 GLU 32 13 13 GLU GLU A . n A 1 33 GLU 33 14 14 GLU GLU A . n A 1 34 SER 34 15 15 SER SER A . n A 1 35 ILE 35 16 16 ILE ILE A . n A 1 36 ALA 36 17 17 ALA ALA A . n A 1 37 PHE 37 18 18 PHE PHE A . n A 1 38 TRP 38 19 19 TRP TRP A . n A 1 39 ASP 39 20 20 ASP ASP A . n A 1 40 TRP 40 21 21 TRP TRP A . n A 1 41 LEU 41 22 22 LEU LEU A . n A 1 42 LEU 42 23 23 LEU LEU A . n A 1 43 GLY 43 24 24 GLY GLY A . n A 1 44 GLU 44 25 25 GLU GLU A . n A 1 45 LEU 45 26 26 LEU LEU A . n A 1 46 GLY 46 27 27 GLY GLY A . n A 1 47 TYR 47 28 28 TYR TYR A . n A 1 48 GLU 48 29 29 GLU GLU A . n A 1 49 ASP 49 30 30 ASP ASP A . n A 1 50 TYR 50 31 31 TYR TYR A . n A 1 51 GLN 51 32 32 GLN GLN A . n A 1 52 SER 52 33 33 SER SER A . n A 1 53 TRP 53 34 34 TRP TRP A . n A 1 54 SER 54 35 35 SER SER A . n A 1 55 ARG 55 36 36 ARG ARG A . n A 1 56 GLY 56 37 37 GLY GLY A . n A 1 57 LYS 57 38 38 LYS LYS A . n A 1 58 SER 58 39 39 SER SER A . n A 1 59 TYR 59 40 40 TYR TYR A . n A 1 60 LYS 60 41 41 LYS LYS A . n A 1 61 HIS 61 42 42 HIS HIS A . n A 1 62 GLY 62 43 43 GLY GLY A . n A 1 63 LYS 63 44 44 LYS LYS A . n A 1 64 THR 64 45 45 THR THR A . n A 1 65 TYR 65 46 46 TYR TYR A . n A 1 66 LEU 66 47 47 LEU LEU A . n A 1 67 VAL 67 48 48 VAL VAL A . n A 1 68 PHE 68 49 49 PHE PHE A . n A 1 69 VAL 69 50 50 VAL VAL A . n A 1 70 GLN 70 51 51 GLN GLN A . n A 1 71 THR 71 52 52 THR THR A . n A 1 72 GLU 72 53 53 GLU GLU A . n A 1 73 ASP 73 54 54 ASP ASP A . n A 1 74 ARG 74 55 55 ARG ARG A . n A 1 75 PHE 75 56 56 PHE PHE A . n A 1 76 GLN 76 57 57 GLN GLN A . n A 1 77 THR 77 58 58 THR THR A . n A 1 78 PRO 78 59 59 PRO PRO A . n A 1 79 THR 79 60 60 THR THR A . n A 1 80 PHE 80 61 61 PHE PHE A . n A 1 81 HIS 81 62 62 HIS HIS A . n A 1 82 ARG 82 63 63 ARG ARG A . n A 1 83 LYS 83 64 64 LYS LYS A . n A 1 84 ARG 84 65 65 ARG ARG A . n A 1 85 THR 85 66 66 THR THR A . n A 1 86 GLY 86 67 67 GLY GLY A . n A 1 87 LEU 87 68 68 LEU LEU A . n A 1 88 ASN 88 69 69 ASN ASN A . n A 1 89 HIS 89 70 70 HIS HIS A . n A 1 90 LEU 90 71 71 LEU LEU A . n A 1 91 ALA 91 72 72 ALA ALA A . n A 1 92 PHE 92 73 73 PHE PHE A . n A 1 93 HIS 93 74 74 HIS HIS A . n A 1 94 ALA 94 75 75 ALA ALA A . n A 1 95 ALA 95 76 76 ALA ALA A . n A 1 96 SER 96 77 77 SER SER A . n A 1 97 ARG 97 78 78 ARG ARG A . n A 1 98 GLU 98 79 79 GLU GLU A . n A 1 99 LYS 99 80 80 LYS LYS A . n A 1 100 VAL 100 81 81 VAL VAL A . n A 1 101 ASP 101 82 82 ASP ASP A . n A 1 102 GLU 102 83 83 GLU GLU A . n A 1 103 LEU 103 84 84 LEU LEU A . n A 1 104 THR 104 85 85 THR THR A . n A 1 105 GLN 105 86 86 GLN GLN A . n A 1 106 LYS 106 87 87 LYS LYS A . n A 1 107 LEU 107 88 88 LEU LEU A . n A 1 108 LYS 108 89 89 LYS LYS A . n A 1 109 GLU 109 90 90 GLU GLU A . n A 1 110 ARG 110 91 91 ARG ARG A . n A 1 111 GLY 111 92 92 GLY GLY A . n A 1 112 ASP 112 93 93 ASP ASP A . n A 1 113 PRO 113 94 94 PRO PRO A . n A 1 114 ILE 114 95 95 ILE ILE A . n A 1 115 LEU 115 96 96 LEU LEU A . n A 1 116 TYR 116 97 97 TYR TYR A . n A 1 117 GLU 117 98 98 GLU GLU A . n A 1 118 ASP 118 99 99 ASP ASP A . n A 1 119 ARG 119 100 100 ARG ARG A . n A 1 120 HIS 120 101 101 HIS HIS A . n A 1 121 PRO 121 102 102 PRO PRO A . n A 1 122 PHE 122 103 103 PHE PHE A . n A 1 123 ALA 123 104 104 ALA ALA A . n A 1 124 GLY 124 105 105 GLY GLY A . n A 1 125 GLY 125 106 106 GLY GLY A . n A 1 126 PRO 126 107 107 PRO PRO A . n A 1 127 ASN 127 108 108 ASN ASN A . n A 1 128 HIS 128 109 109 HIS HIS A . n A 1 129 TYR 129 110 110 TYR TYR A . n A 1 130 ALA 130 111 111 ALA ALA A . n A 1 131 VAL 131 112 112 VAL VAL A . n A 1 132 PHE 132 113 113 PHE PHE A . n A 1 133 CYS 133 114 114 CYS CYS A . n A 1 134 GLU 134 115 115 GLU GLU A . n A 1 135 ASP 135 116 116 ASP ASP A . n A 1 136 PRO 136 117 117 PRO PRO A . n A 1 137 ASN 137 118 118 ASN ASN A . n A 1 138 ARG 138 119 119 ARG ARG A . n A 1 139 ILE 139 120 120 ILE ILE A . n A 1 140 LYS 140 121 121 LYS LYS A . n A 1 141 VAL 141 122 122 VAL VAL A . n A 1 142 GLU 142 123 123 GLU GLU A . n A 1 143 ILE 143 124 124 ILE ILE A . n A 1 144 VAL 144 125 125 VAL VAL A . n A 1 145 ALA 145 126 126 ALA ALA A . n A 1 146 PRO 146 127 127 PRO PRO A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 128 1 ZN ZN A . C 3 UNL 1 129 2 UNL UNL A . D 4 HOH 1 130 3 HOH HOH A . D 4 HOH 2 131 4 HOH HOH A . D 4 HOH 3 132 5 HOH HOH A . D 4 HOH 4 133 6 HOH HOH A . D 4 HOH 5 134 7 HOH HOH A . D 4 HOH 6 135 8 HOH HOH A . D 4 HOH 7 136 9 HOH HOH A . D 4 HOH 8 137 10 HOH HOH A . D 4 HOH 9 138 11 HOH HOH A . D 4 HOH 10 139 12 HOH HOH A . D 4 HOH 11 140 13 HOH HOH A . D 4 HOH 12 141 14 HOH HOH A . D 4 HOH 13 142 15 HOH HOH A . D 4 HOH 14 143 16 HOH HOH A . D 4 HOH 15 144 17 HOH HOH A . D 4 HOH 16 145 18 HOH HOH A . D 4 HOH 17 146 19 HOH HOH A . D 4 HOH 18 147 20 HOH HOH A . D 4 HOH 19 148 21 HOH HOH A . D 4 HOH 20 149 22 HOH HOH A . D 4 HOH 21 150 23 HOH HOH A . D 4 HOH 22 151 24 HOH HOH A . D 4 HOH 23 152 25 HOH HOH A . D 4 HOH 24 153 26 HOH HOH A . D 4 HOH 25 154 27 HOH HOH A . D 4 HOH 26 155 28 HOH HOH A . D 4 HOH 27 156 29 HOH HOH A . D 4 HOH 28 157 30 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 20 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4290 ? 1 MORE -18.5 ? 1 'SSA (A^2)' 12250 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 51.3800000000 -1.0000000000 0.0000000000 0.0000000000 51.3800000000 0.0000000000 0.0000000000 -1.0000000000 58.2350000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 134 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 89 ? A HIS 70 ? 1_555 ZN ? B ZN . ? A ZN 128 ? 1_555 OE1 ? A GLU 142 ? A GLU 123 ? 1_555 95.4 ? 2 NE2 ? A HIS 89 ? A HIS 70 ? 1_555 ZN ? B ZN . ? A ZN 128 ? 1_555 O1 ? C UNL . ? A UNL 129 ? 1_555 120.3 ? 3 OE1 ? A GLU 142 ? A GLU 123 ? 1_555 ZN ? B ZN . ? A ZN 128 ? 1_555 O1 ? C UNL . ? A UNL 129 ? 1_555 112.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 21.8410 _pdbx_refine_tls.origin_y 19.9150 _pdbx_refine_tls.origin_z 22.5910 _pdbx_refine_tls.T[1][1] -0.0390 _pdbx_refine_tls.T[2][2] 0.0047 _pdbx_refine_tls.T[3][3] -0.0627 _pdbx_refine_tls.T[1][2] 0.0467 _pdbx_refine_tls.T[1][3] -0.0530 _pdbx_refine_tls.T[2][3] -0.0034 _pdbx_refine_tls.L[1][1] 2.4062 _pdbx_refine_tls.L[2][2] 2.9662 _pdbx_refine_tls.L[3][3] 3.7680 _pdbx_refine_tls.L[1][2] -0.3084 _pdbx_refine_tls.L[1][3] -0.4505 _pdbx_refine_tls.L[2][3] 0.3058 _pdbx_refine_tls.S[1][1] 0.0118 _pdbx_refine_tls.S[2][2] -0.0072 _pdbx_refine_tls.S[3][3] -0.0045 _pdbx_refine_tls.S[1][2] 0.0419 _pdbx_refine_tls.S[1][3] -0.1889 _pdbx_refine_tls.S[2][3] 0.1878 _pdbx_refine_tls.S[2][1] -0.4884 _pdbx_refine_tls.S[3][1] -0.1238 _pdbx_refine_tls.S[3][2] -0.7333 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 14 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 146 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -5 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 127 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHARP . ? ? ? ? phasing ? ? ? 9 SHELXD . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3CT8 _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 31 ? ? -109.21 -74.45 2 1 ARG A 55 ? ? -59.38 -4.14 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR -3 ? CG ? A TYR 16 CG 2 1 Y 1 A TYR -3 ? CD1 ? A TYR 16 CD1 3 1 Y 1 A TYR -3 ? CD2 ? A TYR 16 CD2 4 1 Y 1 A TYR -3 ? CE1 ? A TYR 16 CE1 5 1 Y 1 A TYR -3 ? CE2 ? A TYR 16 CE2 6 1 Y 1 A TYR -3 ? CZ ? A TYR 16 CZ 7 1 Y 1 A TYR -3 ? OH ? A TYR 16 OH 8 1 Y 1 A PHE -2 ? CG ? A PHE 17 CG 9 1 Y 1 A PHE -2 ? CD1 ? A PHE 17 CD1 10 1 Y 1 A PHE -2 ? CD2 ? A PHE 17 CD2 11 1 Y 1 A PHE -2 ? CE1 ? A PHE 17 CE1 12 1 Y 1 A PHE -2 ? CE2 ? A PHE 17 CE2 13 1 Y 1 A PHE -2 ? CZ ? A PHE 17 CZ 14 1 Y 1 A GLU 14 ? CD ? A GLU 33 CD 15 1 Y 1 A GLU 14 ? OE1 ? A GLU 33 OE1 16 1 Y 1 A GLU 14 ? OE2 ? A GLU 33 OE2 17 1 Y 1 A LYS 41 ? CE ? A LYS 60 CE 18 1 Y 1 A LYS 41 ? NZ ? A LYS 60 NZ 19 1 Y 1 A LYS 44 ? CE ? A LYS 63 CE 20 1 Y 1 A LYS 44 ? NZ ? A LYS 63 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'UNKNOWN LIGAND' UNL 4 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #