HEADER TRANSCRIPTION REGULATOR 15-APR-08 3CU5 TITLE CRYSTAL STRUCTURE OF A TWO COMPONENT TRANSCRIPTIONAL REGULATOR ARAC TITLE 2 FROM CLOSTRIDIUM PHYTOFERMENTANS ISDG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO COMPONENT TRANSCRIPTIONAL REGULATOR, ARAC FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-131; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHYTOFERMENTANS ISDG; SOURCE 3 ORGANISM_TAXID: 357809; SOURCE 4 STRAIN: ISDG / DSM 18823; SOURCE 5 ATCC: 700394; SOURCE 6 GENE: CPHY_0579; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, TRANSCRIPTIONAL KEYWDS 3 REGULATOR, ARAC, TRANSCRIPTION REGULATOR, PSI-2 EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,S.R.WASSERMAN,A.MEYER,J.M.SAUDER,S.K.BURLEY, AUTHOR 2 S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 10 21-FEB-24 3CU5 1 REMARK REVDAT 9 03-FEB-21 3CU5 1 AUTHOR JRNL SEQADV REVDAT 8 14-NOV-18 3CU5 1 AUTHOR REVDAT 7 25-OCT-17 3CU5 1 REMARK REVDAT 6 13-JUL-11 3CU5 1 VERSN REVDAT 5 09-JUN-09 3CU5 1 REVDAT REVDAT 4 24-FEB-09 3CU5 1 VERSN REVDAT 3 23-DEC-08 3CU5 1 AUTHOR KEYWDS REVDAT 2 08-JUL-08 3CU5 1 REMARK REVDAT 1 06-MAY-08 3CU5 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,S.R.WASSERMAN,A.MEYER,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A TWO COMPONENT TRANSCRIPTIONAL JRNL TITL 2 REGULATOR ARAC FROM CLOSTRIDIUM PHYTOFERMENTANS ISDG. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.404 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.309 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2050 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2774 ; 2.098 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ;10.749 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;43.380 ;25.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;22.906 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;30.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1511 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 1.227 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2060 ; 5.854 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 784 ;14.252 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 714 ; 1.061 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9151 59.0816 -8.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.2683 REMARK 3 T33: 0.2511 T12: -0.0104 REMARK 3 T13: -0.0308 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 1.7511 L22: 5.8884 REMARK 3 L33: 4.5602 L12: -0.0806 REMARK 3 L13: -1.3392 L23: -0.4326 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.2427 S13: 0.2684 REMARK 3 S21: -0.1363 S22: 0.0704 S23: 0.0771 REMARK 3 S31: -0.2744 S32: -0.2829 S33: -0.0993 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9554 46.7703 15.5149 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1806 REMARK 3 T33: 0.1919 T12: 0.0043 REMARK 3 T13: -0.0208 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.1519 L22: 2.7321 REMARK 3 L33: 3.9482 L12: 0.7556 REMARK 3 L13: 0.0941 L23: -0.1675 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0113 S13: -0.0910 REMARK 3 S21: 0.0884 S22: -0.0055 S23: 0.1388 REMARK 3 S31: 0.1901 S32: -0.1149 S33: 0.0224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 4 REMARK 4 3CU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16975 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M TRI-AMMONIUM CITRATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.51900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 93 REMARK 465 ALA A 94 REMARK 465 ALA A 95 REMARK 465 ILE A 96 REMARK 465 LYS A 97 REMARK 465 PHE A 98 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 GLU A 134 REMARK 465 GLY A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 MET B 1 REMARK 465 GLN B 131 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 GLU B 134 REMARK 465 GLY B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 36 OD1 ASP A 37 1.54 REMARK 500 CG2 ILE A 108 CD1 ILE A 113 1.91 REMARK 500 OD1 ASP B 63 OH TYR B 91 1.98 REMARK 500 O ILE A 22 CD1 TRP A 24 2.13 REMARK 500 O ILE A 65 OD2 ASP A 69 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 87 O HOH A 158 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -60.89 -28.32 REMARK 500 ALA A 26 23.77 -69.44 REMARK 500 PHE A 29 130.61 -32.73 REMARK 500 ALA A 35 110.68 158.51 REMARK 500 PRO A 60 -84.62 -51.56 REMARK 500 MET A 62 98.93 175.50 REMARK 500 TYR A 75 70.40 -154.48 REMARK 500 SER A 84 -58.43 -125.31 REMARK 500 TYR A 86 -78.40 63.67 REMARK 500 SER A 87 -71.36 -20.36 REMARK 500 ALA A 100 101.18 -168.99 REMARK 500 LEU A 125 -71.14 -68.23 REMARK 500 GLN A 126 -48.81 -25.37 REMARK 500 GLN A 130 30.15 -94.48 REMARK 500 ASP B 9 135.02 179.85 REMARK 500 MET B 59 118.65 -166.43 REMARK 500 PRO B 60 156.01 -49.73 REMARK 500 ARG B 61 -1.16 50.69 REMARK 500 MET B 62 92.17 -176.30 REMARK 500 ASP B 63 158.71 -36.91 REMARK 500 LYS B 73 -62.41 -28.58 REMARK 500 TYR B 75 65.08 -152.81 REMARK 500 TYR B 86 -77.03 -64.36 REMARK 500 SER B 87 67.32 -113.10 REMARK 500 ILE B 96 -78.36 -80.98 REMARK 500 LYS B 97 -72.13 99.76 REMARK 500 ARG B 99 155.91 170.50 REMARK 500 ILE B 101 90.63 -25.23 REMARK 500 GLN B 128 -4.75 -59.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 34 ALA A 35 -93.98 REMARK 500 ARG A 99 ALA A 100 -67.49 REMARK 500 ALA A 129 GLN A 130 148.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11009Q RELATED DB: TARGETDB DBREF 3CU5 A 4 133 UNP A9KIW7 A9KIW7_CLOPH 2 131 DBREF 3CU5 B 4 133 UNP A9KIW7 A9KIW7_CLOPH 2 131 SEQADV 3CU5 MET A 1 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 SER A 2 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 LEU A 3 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 GLU A 134 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 GLY A 135 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS A 136 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS A 137 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS A 138 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS A 139 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS A 140 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS A 141 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 MET B 1 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 SER B 2 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 LEU B 3 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 GLU B 134 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 GLY B 135 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS B 136 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS B 137 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS B 138 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS B 139 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS B 140 UNP A9KIW7 EXPRESSION TAG SEQADV 3CU5 HIS B 141 UNP A9KIW7 EXPRESSION TAG SEQRES 1 A 141 MET SER LEU ARG ILE LEU ILE VAL ASP ASP GLU LYS LEU SEQRES 2 A 141 THR ARG ASP GLY LEU ILE ALA ASN ILE ASN TRP LYS ALA SEQRES 3 A 141 LEU SER PHE ASP GLN ILE ASP GLN ALA ASP ASP GLY ILE SEQRES 4 A 141 ASN ALA ILE GLN ILE ALA LEU LYS HIS PRO PRO ASN VAL SEQRES 5 A 141 LEU LEU THR ASP VAL ARG MET PRO ARG MET ASP GLY ILE SEQRES 6 A 141 GLU LEU VAL ASP ASN ILE LEU LYS LEU TYR PRO ASP CYS SEQRES 7 A 141 SER VAL ILE PHE MET SER GLY TYR SER ASP LYS GLU TYR SEQRES 8 A 141 LEU LYS ALA ALA ILE LYS PHE ARG ALA ILE ARG TYR VAL SEQRES 9 A 141 GLU LYS PRO ILE ASP PRO SER GLU ILE MET ASP ALA LEU SEQRES 10 A 141 LYS GLN SER ILE GLN THR VAL LEU GLN HIS GLN ALA GLN SEQRES 11 A 141 GLN ASP SER GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 141 MET SER LEU ARG ILE LEU ILE VAL ASP ASP GLU LYS LEU SEQRES 2 B 141 THR ARG ASP GLY LEU ILE ALA ASN ILE ASN TRP LYS ALA SEQRES 3 B 141 LEU SER PHE ASP GLN ILE ASP GLN ALA ASP ASP GLY ILE SEQRES 4 B 141 ASN ALA ILE GLN ILE ALA LEU LYS HIS PRO PRO ASN VAL SEQRES 5 B 141 LEU LEU THR ASP VAL ARG MET PRO ARG MET ASP GLY ILE SEQRES 6 B 141 GLU LEU VAL ASP ASN ILE LEU LYS LEU TYR PRO ASP CYS SEQRES 7 B 141 SER VAL ILE PHE MET SER GLY TYR SER ASP LYS GLU TYR SEQRES 8 B 141 LEU LYS ALA ALA ILE LYS PHE ARG ALA ILE ARG TYR VAL SEQRES 9 B 141 GLU LYS PRO ILE ASP PRO SER GLU ILE MET ASP ALA LEU SEQRES 10 B 141 LYS GLN SER ILE GLN THR VAL LEU GLN HIS GLN ALA GLN SEQRES 11 B 141 GLN ASP SER GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *95(H2 O) HELIX 1 1 GLU A 11 ILE A 22 1 12 HELIX 2 2 ASN A 23 LEU A 27 5 5 HELIX 3 3 ASP A 37 LEU A 46 1 10 HELIX 4 4 ASP A 63 TYR A 75 1 13 HELIX 5 5 ASP A 109 ALA A 129 1 21 HELIX 6 6 GLU B 11 ASN B 21 1 11 HELIX 7 7 ASP B 37 HIS B 48 1 12 HELIX 8 8 ASP B 63 TYR B 75 1 13 HELIX 9 9 ASP B 88 ILE B 96 1 9 HELIX 10 10 SER B 111 GLN B 128 1 18 SHEET 1 A 5 GLN A 31 ALA A 35 0 SHEET 2 A 5 ARG A 4 VAL A 8 1 N ILE A 7 O ASP A 33 SHEET 3 A 5 VAL A 52 ASP A 56 1 O VAL A 52 N LEU A 6 SHEET 4 A 5 SER A 79 MET A 83 1 O ILE A 81 N LEU A 53 SHEET 5 A 5 ARG A 102 VAL A 104 1 O VAL A 104 N PHE A 82 SHEET 1 B 5 PHE B 29 ALA B 35 0 SHEET 2 B 5 LEU B 3 VAL B 8 1 N LEU B 3 O ASP B 30 SHEET 3 B 5 VAL B 52 ASP B 56 1 O LEU B 54 N VAL B 8 SHEET 4 B 5 SER B 79 SER B 84 1 O MET B 83 N THR B 55 SHEET 5 B 5 ARG B 102 GLU B 105 1 O ARG B 102 N PHE B 82 CISPEP 1 LYS A 106 PRO A 107 0 -4.23 CISPEP 2 LYS B 106 PRO B 107 0 -6.31 CRYST1 34.326 87.038 52.697 90.00 106.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029132 0.000000 0.008477 0.00000 SCALE2 0.000000 0.011489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019763 0.00000